Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30180 * 126.80212 * 2 1 4 4 O 1.20915 * 111.60353 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.57123 * 359.76053 * 4 3 2 6 6 C 1.50701 * 126.78220 * 180.28606 * 5 4 3 7 7 C 1.35452 * 106.44012 * 0.38228 * 5 4 3 8 8 C 1.50705 * 128.00133 * 179.90762 * 7 5 4 9 9 C 1.52995 * 109.47244 * 269.67732 * 8 7 5 10 10 N 1.46906 * 109.46978 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47069 * 304.99474 * 12 11 10 14 14 C 1.47199 * 109.47256 * 64.99890 * 12 11 10 15 15 N 7.53566 * 66.72559 * 194.28291 * 2 1 3 16 16 C 1.53006 * 109.46846 * 185.00040 * 12 11 10 17 17 C 1.50699 * 109.46678 * 174.99845 * 16 12 11 18 18 H 1.07994 * 120.00629 * 0.02562 * 17 16 12 19 19 C 1.37887 * 119.99470 * 179.97438 * 17 16 12 20 20 N 1.31510 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99747 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47464 * 89.99846 * 21 19 17 23 23 H 1.48504 * 109.47105 * 209.99902 * 21 19 17 24 24 H 1.48499 * 109.47186 * 329.99318 * 21 19 17 25 25 H 1.09003 * 109.46660 * 269.97422 * 1 2 3 26 26 H 1.09002 * 109.46861 * 29.96864 * 1 2 3 27 27 H 1.08995 * 109.47246 * 149.97577 * 1 2 3 28 28 H 1.09000 * 109.47263 * 270.11658 * 6 5 4 29 29 H 1.09008 * 109.46569 * 30.11105 * 6 5 4 30 30 H 1.08998 * 109.46951 * 150.11241 * 6 5 4 31 31 H 1.09005 * 109.46616 * 149.68288 * 8 7 5 32 32 H 1.09002 * 109.47100 * 29.68426 * 8 7 5 33 33 H 1.08995 * 109.46859 * 60.00696 * 9 8 7 34 34 H 1.09002 * 109.47639 * 300.00364 * 9 8 7 35 35 H 1.00898 * 110.99995 * 303.95410 * 10 9 8 36 36 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 37 37 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 38 38 H 1.09004 * 109.46746 * 294.99703 * 16 12 11 39 39 H 1.08998 * 109.47205 * 54.99872 * 16 12 11 40 40 H 0.96996 * 120.00103 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3696 0.0113 7 6 2.3539 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4424 10 7 1.4388 -4.4963 -1.4419 11 6 1.3002 -5.0046 -2.8132 12 6 0.8983 -6.4803 -2.7718 13 1 1.6194 -7.0366 -2.1729 14 6 -0.4400 -6.6077 -2.1722 15 7 -1.4706 -6.7085 -1.7078 16 6 0.8753 -7.0426 -4.1946 17 6 0.6000 -8.5234 -4.1450 18 1 0.4555 -9.0143 -3.1940 19 6 0.5317 -9.2514 -5.3140 20 7 0.7062 -8.6534 -6.4722 21 14 0.1898 -11.0868 -5.2526 22 1 -1.2755 -11.3198 -5.3138 23 1 0.8453 -11.7514 -6.4076 24 1 0.7280 -11.6485 -3.9877 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 5.2202 -1.5550 -1.0147 29 1 5.6637 -0.7850 0.5277 30 1 4.7627 -2.3202 0.5260 31 1 1.0054 -2.7037 0.5145 32 1 2.7232 -3.1701 0.5132 33 1 2.7779 -2.9613 -1.9570 34 1 1.0601 -2.4949 -1.9557 35 1 2.0982 -5.0501 -0.9162 36 1 2.2505 -4.9010 -3.3369 37 1 0.5329 -4.4339 -3.3364 38 1 0.0927 -6.5466 -4.7687 39 1 1.8406 -6.8682 -4.6699 40 1 0.6578 -9.1655 -7.2946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554551428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 39.542318 kcal Electronic energy + Delta-G solvation = -20375.655717 eV Core-core repulsion = 17192.044810 eV Total energy + Delta-G solvation = -3183.610907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.89618 -38.89456 -37.41610 -36.06581 -35.32691 -34.57900 -33.37936 -30.89362 -29.60211 -28.58359 -27.62228 -24.85193 -23.48708 -23.43550 -22.10323 -20.99914 -18.70262 -18.58661 -18.31085 -17.85747 -16.64572 -16.37915 -15.85299 -15.66110 -15.23790 -14.83926 -14.58448 -14.32231 -14.23111 -14.02242 -13.82784 -13.71245 -13.69503 -13.42353 -13.34643 -13.10759 -12.99053 -12.89945 -12.70600 -12.46195 -12.31530 -12.18739 -11.87174 -11.66826 -11.37765 -11.13238 -10.77430 -10.54324 -10.02461 -9.29693 -8.18135 -6.26135 0.52655 1.21837 1.41299 1.43977 1.52638 2.11869 2.18253 2.25184 2.42935 3.14202 3.17873 3.32590 3.41673 3.56560 3.89944 4.18154 4.20112 4.30892 4.41075 4.44226 4.48076 4.60822 4.62725 4.73600 4.75581 4.80487 4.85720 4.89357 4.94423 5.03869 5.11267 5.17612 5.21740 5.40245 5.49404 5.64608 5.81204 6.03198 6.23198 6.60511 6.85897 6.97296 7.33574 7.42593 8.92767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031327 B = 0.002838 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.575802 B = 9863.275422 C =10247.487641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 N -0.403 5.403 4 O 0.080 5.920 5 C -0.026 4.026 6 C -0.075 4.075 7 C -0.207 4.207 8 C -0.030 4.030 9 C 0.071 3.929 10 N -0.699 5.699 11 C 0.079 3.921 12 C 0.020 3.980 13 H 0.124 0.876 14 C 0.266 3.734 15 N -0.516 5.516 16 C 0.036 3.964 17 C -0.538 4.538 18 H 0.056 0.944 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.947 3.053 22 H -0.286 1.286 23 H -0.280 1.280 24 H -0.262 1.262 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.354 0.646 36 H 0.068 0.932 37 H 0.064 0.936 38 H -0.002 1.002 39 H 0.036 0.964 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 14.877 13.172 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 N -0.112 5.112 4 O 0.018 5.982 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.212 4.212 8 C -0.068 4.068 9 C -0.058 4.058 10 N -0.332 5.332 11 C -0.051 4.051 12 C -0.002 4.002 13 H 0.142 0.858 14 C -0.050 4.050 15 N -0.194 5.194 16 C -0.002 4.002 17 C -0.576 4.576 18 H 0.074 0.926 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.773 3.227 22 H -0.212 1.212 23 H -0.205 1.205 24 H -0.186 1.186 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.174 0.826 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.016 0.984 39 H 0.055 0.945 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.126 16.150 13.767 22.724 hybrid contribution 0.579 -1.586 -0.918 1.922 sum 8.706 14.563 12.849 21.283 Atomic orbital electron populations 1.20256 0.84913 1.04194 1.04132 1.23950 0.99960 0.88867 1.01841 1.73828 0.89943 1.25134 1.22321 1.84744 1.21295 1.23880 1.68329 1.24993 0.99666 0.83050 1.01186 1.20585 0.88330 0.98883 1.05357 1.21093 0.91583 0.97813 1.10707 1.19785 1.03226 0.86961 0.96794 1.21813 0.99336 0.88324 0.96312 1.60384 1.55326 1.03547 1.13899 1.21839 1.01329 0.91766 0.90163 1.19192 0.85401 0.97845 0.97723 0.85813 1.29338 0.94848 0.90093 0.90738 1.80941 1.13775 1.11771 1.12871 1.19000 0.97561 0.94193 0.89488 1.21579 1.48436 0.94935 0.92629 0.92600 1.25717 0.95187 1.02550 0.95395 1.70028 1.50877 1.37556 0.97987 0.85711 0.77905 0.80862 0.78217 1.21199 1.20488 1.18617 0.89155 0.90592 0.89254 0.88142 0.88606 0.87267 0.90255 0.88384 0.93835 0.92425 0.82628 0.91356 0.91725 0.98366 0.94537 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.39 71.24 0.74 -0.60 16 2 C 0.01 0.27 7.33 43.58 0.32 0.59 16 3 N -0.40 -10.13 12.07 -49.56 -0.60 -10.73 16 4 O 0.08 1.76 11.20 71.61 0.80 2.56 16 5 C -0.03 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.07 -0.56 10.30 71.24 0.73 0.18 16 7 C -0.21 -3.75 5.58 -19.73 -0.11 -3.86 16 8 C -0.03 -0.44 5.80 29.85 0.17 -0.27 16 9 C 0.07 1.25 5.67 86.30 0.49 1.74 16 10 N -0.70 -14.46 6.20 -513.88 -3.19 -17.64 16 11 C 0.08 2.03 5.05 86.30 0.44 2.46 16 12 C 0.02 0.67 2.35 -12.60 -0.03 0.64 16 13 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 14 C 0.27 10.53 13.66 89.45 1.22 11.75 16 15 N -0.52 -22.70 18.53 19.99 0.37 -22.33 16 16 C 0.04 1.62 4.42 29.85 0.13 1.75 16 17 C -0.54 -27.79 8.60 25.60 0.22 -27.57 16 18 H 0.06 2.84 7.59 -2.91 -0.02 2.82 16 19 C 0.01 0.56 5.46 84.66 0.46 1.02 16 20 N -0.92 -52.50 13.29 21.45 0.28 -52.22 16 21 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.11 0.48 7.43 -2.39 -0.02 0.46 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.10 1.05 7.44 -2.39 -0.02 1.03 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.35 5.83 8.73 -89.70 -0.78 5.05 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -68.02 349.59 4.93 -63.09 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.26 Total: 4.90 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.98 Total: -12.41 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -3.13 Total: -102.92 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.80 Total: 2.56 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.02 4.93 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554551428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.636 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds