Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30173 * 126.80125 * 2 1 4 4 O 1.20917 * 111.60535 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.56926 * 359.75770 * 4 3 2 6 6 C 1.50697 * 126.78122 * 180.28372 * 5 4 3 7 7 C 1.35451 * 106.44368 * 0.38572 * 5 4 3 8 8 C 1.50697 * 128.00746 * 179.91056 * 7 5 4 9 9 C 1.53002 * 109.47299 * 269.67675 * 8 7 5 10 10 N 1.46901 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00119 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 8.16806 * 99.32665 * 192.25561 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.08998 * 109.46973 * 269.97092 * 1 2 3 26 26 H 1.08990 * 109.47129 * 29.97348 * 1 2 3 27 27 H 1.09001 * 109.46798 * 149.97602 * 1 2 3 28 28 H 1.08992 * 109.47688 * 270.12078 * 6 5 4 29 29 H 1.09009 * 109.46779 * 30.12295 * 6 5 4 30 30 H 1.09005 * 109.47163 * 150.11255 * 6 5 4 31 31 H 1.09002 * 109.47289 * 149.67313 * 8 7 5 32 32 H 1.08996 * 109.47465 * 29.67417 * 8 7 5 33 33 H 1.09002 * 109.47245 * 59.99611 * 9 8 7 34 34 H 1.08996 * 109.47056 * 299.99885 * 9 8 7 35 35 H 1.00905 * 110.99468 * 303.95636 * 10 9 8 36 36 H 1.08998 * 109.47324 * 59.99878 * 11 10 9 37 37 H 1.09002 * 109.47421 * 300.00055 * 11 10 9 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3695 0.0113 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5863 0.0000 9 6 1.8243 -3.0788 -1.4423 10 7 1.4400 -4.4966 -1.4419 11 6 1.3004 -5.0047 -2.8131 12 6 0.9010 -6.4810 -2.7718 13 1 -0.0015 -6.5966 -2.1714 14 6 1.9919 -7.2680 -2.1741 15 7 2.8308 -7.8764 -1.7109 16 6 0.6342 -6.9772 -4.1942 17 6 0.1229 -8.3940 -4.1444 18 1 0.0001 -8.8907 -3.1933 19 6 -0.1940 -9.0540 -5.3128 20 7 -0.0448 -8.4490 -6.4710 21 14 -0.8350 -10.8074 -5.2506 22 1 -2.0938 -10.8467 -4.4637 23 1 -1.0985 -11.2873 -6.6311 24 1 0.1781 -11.6824 -4.6078 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 5.2202 -1.5549 -1.0145 29 1 5.6637 -0.7850 0.5279 30 1 4.7628 -2.3202 0.5261 31 1 1.0055 -2.7038 0.5147 32 1 2.7232 -3.1701 0.5132 33 1 2.7780 -2.9614 -1.9570 34 1 1.0602 -2.4951 -1.9556 35 1 2.1001 -5.0500 -0.9162 36 1 2.2500 -4.9002 -3.3378 37 1 0.5321 -4.4346 -3.3354 38 1 1.5593 -6.9448 -4.7698 39 1 -0.1111 -6.3385 -4.6681 40 1 -0.2675 -8.9134 -7.2930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554551429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 58.615018 kcal Electronic energy + Delta-G solvation = -20381.891144 eV Core-core repulsion = 17199.107292 eV Total energy + Delta-G solvation = -3182.783853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.10751 -37.76883 -36.35388 -34.93223 -33.96541 -33.50765 -31.90066 -29.90294 -28.85272 -27.68986 -26.23964 -23.62786 -22.43649 -21.85252 -21.26674 -20.28972 -17.85360 -17.13856 -16.73870 -16.59922 -15.80323 -15.11363 -14.85472 -14.55833 -14.01413 -13.75078 -13.67861 -13.41097 -13.27732 -13.11454 -12.83513 -12.74206 -12.61822 -12.45305 -12.16818 -12.06485 -11.69077 -11.49763 -11.27067 -11.05227 -10.95630 -10.75153 -10.58767 -10.28943 -10.01192 -9.59699 -9.34544 -9.22945 -8.47722 -8.41792 -6.11627 -4.15015 1.24791 1.99065 2.89594 3.29754 3.34138 3.37500 3.52738 3.58426 3.94144 4.18617 4.22751 4.39997 4.58208 4.75601 4.86127 4.95444 5.05215 5.09836 5.11869 5.26343 5.27213 5.29572 5.38283 5.45802 5.50589 5.54237 5.67263 5.70505 5.80687 5.91961 6.03641 6.11298 6.31578 6.50677 7.00490 7.34781 7.41070 7.49937 7.83059 8.09093 8.20545 8.35637 8.89321 9.50540 10.99214 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.002840 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.179270 B = 9856.392755 C =10252.264372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.075 4.075 7 C -0.194 4.194 8 C -0.040 4.040 9 C 0.064 3.936 10 N -0.692 5.692 11 C 0.068 3.932 12 C 0.006 3.994 13 H 0.112 0.888 14 C 0.242 3.758 15 N -0.477 5.477 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.338 0.662 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 16.852 12.080 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.096 4.096 6 C -0.132 4.132 7 C -0.199 4.199 8 C -0.079 4.079 9 C -0.065 4.065 10 N -0.323 5.323 11 C -0.062 4.062 12 C -0.016 4.016 13 H 0.129 0.871 14 C -0.075 4.075 15 N -0.154 5.154 16 C -0.006 4.006 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.720 3.280 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.624 17.367 12.647 21.976 hybrid contribution 0.174 -1.631 -0.591 1.744 sum 4.798 15.736 12.055 20.396 Atomic orbital electron populations 1.20200 0.85828 1.04082 1.03415 1.23499 0.99014 0.88416 1.02409 1.73833 0.89307 1.24045 1.20476 1.84788 1.21671 1.22561 1.68045 1.24275 0.98311 0.83812 1.03187 1.20351 0.90043 0.98588 1.04216 1.20937 0.91494 0.97604 1.09835 1.19872 1.02882 0.87487 0.97616 1.21887 0.99433 0.89725 0.95464 1.60552 1.53991 1.02483 1.15242 1.22075 1.00996 0.94548 0.88564 1.19338 0.91720 0.89463 1.01054 0.87065 1.29280 0.93688 0.92978 0.91556 1.80995 1.12440 1.09978 1.11954 1.19158 0.98100 0.96729 0.86620 1.21109 1.44389 0.98259 0.92845 0.92538 1.24955 0.95414 0.98144 0.95442 1.69929 1.48145 1.37447 0.97505 0.86648 0.79534 0.84756 0.77105 1.19987 1.21184 1.20269 0.90197 0.90604 0.89488 0.89338 0.89892 0.89014 0.89358 0.90724 0.95225 0.90578 0.84443 0.94671 0.89007 0.95770 0.94200 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 36.01 0.37 -0.25 16 2 C 0.03 0.28 7.33 -82.10 -0.60 -0.33 16 3 N -0.37 -4.60 12.07 33.42 0.40 -4.20 16 4 O 0.09 1.07 11.20 17.18 0.19 1.26 16 5 C -0.03 -0.31 7.49 -35.30 -0.26 -0.57 16 6 C -0.07 -0.45 10.30 36.00 0.37 -0.08 16 7 C -0.19 -1.91 5.58 -104.42 -0.58 -2.50 16 8 C -0.04 -0.36 5.80 -27.88 -0.16 -0.52 16 9 C 0.06 0.65 5.67 -3.82 -0.02 0.63 16 10 N -0.69 -8.30 6.50 -113.78 -0.74 -9.04 16 11 C 0.07 0.95 5.12 -3.83 -0.02 0.93 16 12 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 13 H 0.11 1.89 8.14 -51.92 -0.42 1.46 16 14 C 0.24 4.70 12.97 -20.79 -0.27 4.43 16 15 N -0.48 -10.02 18.53 42.12 0.78 -9.24 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 17 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 18 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.09 0.47 7.44 -51.93 -0.39 0.09 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.60 7.44 -51.93 -0.39 0.21 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.34 4.13 7.81 -39.29 -0.31 3.82 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -30.70 348.41 -6.42 -37.12 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.11 Total: -2.37 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.92 Total: -10.30 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 1.18 Total: -47.05 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.19 Total: 1.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.70 -6.42 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554551429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.736 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds