Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30173 * 126.80125 * 2 1 4 4 O 1.20917 * 111.60535 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.56926 * 359.75770 * 4 3 2 6 6 C 1.50697 * 126.78122 * 180.28372 * 5 4 3 7 7 C 1.35451 * 106.44368 * 0.38572 * 5 4 3 8 8 C 1.50697 * 128.00746 * 179.91056 * 7 5 4 9 9 C 1.53002 * 109.47299 * 269.67675 * 8 7 5 10 10 N 1.46901 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.46895 * 111.00119 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 8.16806 * 99.32665 * 192.25561 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.08998 * 109.46973 * 269.97092 * 1 2 3 26 26 H 1.08990 * 109.47129 * 29.97348 * 1 2 3 27 27 H 1.09001 * 109.46798 * 149.97602 * 1 2 3 28 28 H 1.08992 * 109.47688 * 270.12078 * 6 5 4 29 29 H 1.09009 * 109.46779 * 30.12295 * 6 5 4 30 30 H 1.09005 * 109.47163 * 150.11255 * 6 5 4 31 31 H 1.09002 * 109.47289 * 149.67313 * 8 7 5 32 32 H 1.08996 * 109.47465 * 29.67417 * 8 7 5 33 33 H 1.09002 * 109.47245 * 59.99611 * 9 8 7 34 34 H 1.08996 * 109.47056 * 299.99885 * 9 8 7 35 35 H 1.00905 * 110.99468 * 303.95636 * 10 9 8 36 36 H 1.08998 * 109.47324 * 59.99878 * 11 10 9 37 37 H 1.09002 * 109.47421 * 300.00055 * 11 10 9 38 38 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 39 39 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3695 0.0113 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5863 0.0000 9 6 1.8243 -3.0788 -1.4423 10 7 1.4400 -4.4966 -1.4419 11 6 1.3004 -5.0047 -2.8131 12 6 0.9010 -6.4810 -2.7718 13 1 -0.0015 -6.5966 -2.1714 14 6 1.9919 -7.2680 -2.1741 15 7 2.8308 -7.8764 -1.7109 16 6 0.6342 -6.9772 -4.1942 17 6 0.1229 -8.3940 -4.1444 18 1 0.0001 -8.8907 -3.1933 19 6 -0.1940 -9.0540 -5.3128 20 7 -0.0448 -8.4490 -6.4710 21 14 -0.8350 -10.8074 -5.2506 22 1 -2.0938 -10.8467 -4.4637 23 1 -1.0985 -11.2873 -6.6311 24 1 0.1781 -11.6824 -4.6078 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 5.2202 -1.5549 -1.0145 29 1 5.6637 -0.7850 0.5279 30 1 4.7628 -2.3202 0.5261 31 1 1.0055 -2.7038 0.5147 32 1 2.7232 -3.1701 0.5132 33 1 2.7780 -2.9614 -1.9570 34 1 1.0602 -2.4951 -1.9556 35 1 2.1001 -5.0500 -0.9162 36 1 2.2500 -4.9002 -3.3378 37 1 0.5321 -4.4346 -3.3354 38 1 1.5593 -6.9448 -4.7698 39 1 -0.1111 -6.3385 -4.6681 40 1 -0.2675 -8.9134 -7.2930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554551429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = 40.325940 kcal Electronic energy + Delta-G solvation = -20382.684218 eV Core-core repulsion = 17199.107292 eV Total energy + Delta-G solvation = -3183.576927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.89101 -39.01048 -37.43154 -36.07614 -35.35928 -34.58616 -33.41224 -30.91895 -29.56153 -28.60953 -27.63089 -24.86515 -23.56123 -23.43418 -22.09038 -21.00295 -18.66084 -18.52946 -18.23941 -17.83255 -16.90925 -16.62008 -15.87424 -15.66784 -15.03503 -14.83616 -14.53941 -14.29266 -14.28587 -14.17047 -13.89429 -13.77641 -13.65568 -13.54831 -13.34705 -13.09563 -13.00629 -12.92536 -12.62506 -12.44648 -12.33735 -12.21969 -11.96089 -11.66747 -11.38553 -11.16447 -10.76381 -10.53708 -10.04443 -9.39347 -8.18407 -6.26591 0.50808 1.22910 1.42555 1.43675 1.50829 1.97463 1.99666 2.22121 2.42596 3.12304 3.16967 3.27702 3.34701 3.56128 3.88622 4.12387 4.18748 4.29580 4.38123 4.44366 4.48072 4.58618 4.67117 4.69578 4.72966 4.77000 4.87771 4.93370 4.96459 5.01787 5.09460 5.15626 5.21595 5.38726 5.48998 5.64252 5.80745 5.99836 6.22190 6.37569 6.77789 6.89027 7.32789 7.42049 8.92290 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.002840 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.179270 B = 9856.392755 C =10252.264372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 N -0.403 5.403 4 O 0.078 5.922 5 C -0.030 4.030 6 C -0.076 4.076 7 C -0.206 4.206 8 C -0.031 4.031 9 C 0.068 3.932 10 N -0.688 5.688 11 C 0.079 3.921 12 C 0.019 3.981 13 H 0.125 0.875 14 C 0.252 3.748 15 N -0.503 5.503 16 C 0.038 3.962 17 C -0.540 4.540 18 H 0.055 0.945 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.948 3.052 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.281 1.281 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.338 0.662 36 H 0.033 0.967 37 H 0.103 0.897 38 H 0.000 1.000 39 H 0.036 0.964 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 16.661 13.065 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 N -0.112 5.112 4 O 0.016 5.984 5 C -0.093 4.093 6 C -0.133 4.133 7 C -0.210 4.210 8 C -0.069 4.069 9 C -0.061 4.061 10 N -0.319 5.319 11 C -0.051 4.051 12 C -0.003 4.003 13 H 0.142 0.858 14 C -0.064 4.064 15 N -0.181 5.181 16 C -0.001 4.001 17 C -0.578 4.578 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.774 3.226 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.206 1.206 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.018 0.982 39 H 0.054 0.946 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.399 17.182 13.649 22.380 hybrid contribution 0.275 -1.557 -0.887 1.813 sum 4.675 15.626 12.762 20.709 Atomic orbital electron populations 1.20305 0.84312 1.04576 1.04325 1.24006 1.00200 0.88476 1.01396 1.73826 0.89864 1.25202 1.22356 1.84748 1.21478 1.23658 1.68496 1.24909 0.99616 0.83221 1.01544 1.20540 0.88808 0.98809 1.05098 1.21081 0.91539 0.97839 1.10586 1.19789 1.03484 0.86853 0.96738 1.21887 0.99414 0.88353 0.96474 1.60508 1.54265 1.03423 1.13715 1.21902 1.01218 0.92077 0.89954 1.19221 0.91827 0.91349 0.97904 0.85759 1.29580 0.93442 0.92409 0.90979 1.81000 1.13419 1.10805 1.12848 1.18986 0.96492 0.95283 0.89370 1.21551 1.43643 0.99950 0.92649 0.92665 1.25717 0.95980 1.01739 0.95367 1.70027 1.49464 1.38901 0.98006 0.85760 0.79212 0.80443 0.77231 1.18734 1.20858 1.20629 0.89019 0.90555 0.88504 0.88507 0.88481 0.87806 0.88985 0.89610 0.95154 0.90575 0.84411 0.94914 0.87877 0.98178 0.94621 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.39 71.24 0.74 -0.42 16 2 C 0.02 0.37 7.33 43.58 0.32 0.69 16 3 N -0.40 -9.96 12.07 -49.57 -0.60 -10.55 16 4 O 0.08 1.75 11.20 71.64 0.80 2.55 16 5 C -0.03 -0.52 7.49 25.04 0.19 -0.33 16 6 C -0.08 -0.75 10.30 71.24 0.73 -0.02 16 7 C -0.21 -3.74 5.58 -19.74 -0.11 -3.85 16 8 C -0.03 -0.47 5.80 29.85 0.17 -0.30 16 9 C 0.07 1.21 5.67 86.30 0.49 1.70 16 10 N -0.69 -14.85 6.50 -513.90 -3.34 -18.19 16 11 C 0.08 2.05 5.12 86.30 0.44 2.49 16 12 C 0.02 0.64 2.42 -12.60 -0.03 0.60 16 13 H 0.12 3.94 8.14 -2.38 -0.02 3.92 16 14 C 0.25 9.49 12.97 89.45 1.16 10.65 16 15 N -0.50 -20.61 18.53 19.99 0.37 -20.24 16 16 C 0.04 1.68 4.42 29.85 0.13 1.81 16 17 C -0.54 -28.06 8.60 25.60 0.22 -27.84 16 18 H 0.06 2.83 7.59 -2.91 -0.02 2.80 16 19 C 0.01 0.59 5.46 84.66 0.46 1.05 16 20 N -0.92 -52.58 13.29 21.45 0.28 -52.30 16 21 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.10 0.80 7.44 -2.38 -0.02 0.78 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.13 7.44 -2.39 -0.02 1.12 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.34 7.44 7.81 -89.69 -0.70 6.74 16 36 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -64.91 348.41 4.81 -60.11 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.34 Total: 7.50 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.92 Total: -13.75 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.28 Total: -101.28 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.80 Total: 2.55 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.91 4.81 -60.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554551429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.433 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds