Wall clock time and date at job start Mon Mar 30 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31922 * 120.17342 * 2 1 4 4 N 1.28280 * 122.32731 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.51190 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.97291 * 0.02562 * 5 4 3 7 7 C 1.39724 * 120.16957 * 179.71820 * 2 1 3 8 8 C 1.48135 * 121.14749 * 359.97438 * 7 2 1 9 9 O 1.21517 * 119.99569 * 5.88403 * 8 7 2 10 10 N 1.34770 * 120.00147 * 185.87813 * 8 7 2 11 11 C 1.46509 * 120.00071 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47257 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47053 * 300.00012 * 12 11 10 14 14 C 1.53005 * 109.47039 * 60.00056 * 12 11 10 15 15 C 1.52994 * 109.46989 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.46970 * 180.02562 * 15 12 11 17 17 H 1.07996 * 120.00355 * 0.02562 * 16 15 12 18 18 C 1.37886 * 119.99926 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99956 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46780 * 90.00013 * 20 18 16 22 22 H 1.48496 * 109.46989 * 209.99752 * 20 18 16 23 23 H 1.48500 * 109.47350 * 330.00449 * 20 18 16 24 24 H 1.09000 * 109.47028 * 96.30249 * 1 2 3 25 25 H 1.09004 * 109.46672 * 336.30927 * 1 2 3 26 26 H 1.08994 * 109.47464 * 216.30641 * 1 2 3 27 27 H 1.08003 * 120.01439 * 179.97438 * 5 4 3 28 28 H 1.07998 * 121.09356 * 179.97438 * 6 5 4 29 29 H 0.96993 * 120.00313 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.46716 * 300.00203 * 11 10 8 31 31 H 1.08997 * 109.47181 * 59.99728 * 11 10 8 32 32 H 1.09005 * 109.47349 * 60.00140 * 13 12 11 33 33 H 1.09010 * 109.46910 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47109 * 299.99841 * 13 12 11 35 35 H 1.09002 * 109.47032 * 59.99475 * 14 12 11 36 36 H 1.08997 * 109.47103 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.46608 * 299.99656 * 14 12 11 38 38 H 1.09003 * 109.47195 * 299.99705 * 15 12 11 39 39 H 1.08997 * 109.47199 * 60.00144 * 15 12 11 40 40 H 0.96993 * 119.99984 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0005 5 6 4.2023 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2092 -1.2080 0.0059 8 6 1.4982 -2.5075 0.0129 9 8 0.2882 -2.5386 -0.0944 10 7 2.1934 -3.6553 0.1381 11 6 1.4902 -4.9406 0.1444 12 6 2.5043 -6.0760 0.2970 13 6 3.4902 -6.0398 -0.8723 14 6 3.2668 -5.9053 1.6125 15 6 1.7699 -7.4181 0.3043 16 6 2.7687 -8.5364 0.4553 17 1 3.8219 -8.3123 0.5382 18 6 2.3378 -9.8458 0.4886 19 7 3.2095 -10.8218 0.6208 20 14 0.5160 -10.2334 0.3472 21 1 0.1575 -10.4124 -1.0828 22 1 0.2163 -11.4823 1.0927 23 1 -0.2742 -9.1137 0.9191 24 1 -0.3633 -0.1128 -1.0215 25 1 -0.3633 0.9411 0.4129 26 1 -0.3634 -0.8281 0.6084 27 1 5.2788 0.1913 -0.0014 28 1 4.2059 -2.0479 -0.0010 29 1 3.1592 -3.6305 0.2240 30 1 0.7874 -4.9661 0.9772 31 1 0.9473 -5.0624 -0.7929 32 1 4.0135 -5.0836 -0.8770 33 1 4.2130 -6.8485 -0.7633 34 1 2.9471 -6.1614 -1.8094 35 1 2.5643 -5.9310 2.4456 36 1 3.9896 -6.7140 1.7211 37 1 3.7900 -4.9491 1.6077 38 1 1.0678 -7.4437 1.1376 39 1 1.2264 -7.5400 -0.6326 40 1 2.9064 -11.7428 0.6439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557978924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:51 Heat of formation + Delta-G solvation = 8.209288 kcal Electronic energy + Delta-G solvation = -21324.062853 eV Core-core repulsion = 18139.093243 eV Total energy + Delta-G solvation = -3184.969609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58335 -39.69032 -37.45479 -34.40066 -33.96703 -33.22784 -32.13403 -28.72364 -27.90082 -26.81931 -26.70000 -25.36485 -23.33571 -22.58766 -20.91984 -18.97547 -18.06479 -17.54025 -16.87074 -16.03058 -15.98669 -15.83309 -15.08312 -15.00000 -14.22781 -13.92954 -13.85754 -13.68797 -13.46097 -13.04474 -12.87587 -12.53855 -12.36908 -12.33700 -11.37302 -11.31696 -11.26417 -11.10236 -10.72601 -10.64670 -10.59555 -10.56939 -10.09885 -10.05845 -9.87907 -9.80198 -9.53673 -9.09443 -9.07352 -8.60574 -6.11250 -4.09269 0.00322 0.52150 2.56191 2.89679 3.26051 3.30489 3.34696 3.37471 3.68462 4.00698 4.03811 4.31426 4.39070 4.45076 4.91619 5.09434 5.18642 5.20269 5.27629 5.37553 5.47464 5.50599 5.62603 5.78772 5.93864 5.94049 5.99399 6.08962 6.15205 6.27647 6.46362 6.49893 6.75132 6.89616 6.92891 7.08708 7.25513 7.31112 7.70248 7.96022 8.32937 8.44588 8.92067 9.51075 11.01366 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034466 B = 0.003662 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.201013 B = 7644.414994 C = 8251.627905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.124 3.876 3 N -0.247 5.247 4 N -0.225 5.225 5 C 0.028 3.972 6 C -0.082 4.082 7 C -0.130 4.130 8 C 0.555 3.445 9 O -0.522 6.522 10 N -0.709 5.709 11 C 0.124 3.876 12 C -0.064 4.064 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.001 4.001 16 C -0.514 4.514 17 H 0.078 0.922 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.179 0.821 28 H 0.155 0.845 29 H 0.399 0.601 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 18.467 -0.995 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 N -0.091 5.091 4 N -0.067 5.067 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.145 4.145 8 C 0.340 3.660 9 O -0.399 6.399 10 N -0.360 5.360 11 C 0.002 3.998 12 C -0.064 4.064 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.039 4.039 16 C -0.551 4.551 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.196 0.804 28 H 0.173 0.827 29 H 0.236 0.764 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.256 19.871 -1.053 19.901 hybrid contribution -0.156 -2.038 -0.078 2.046 sum -0.412 17.833 -1.131 17.873 Atomic orbital electron populations 1.21003 0.86191 1.04523 1.04755 1.23178 0.99774 0.88523 0.90560 1.73092 1.01480 1.24096 1.10391 1.72871 0.99707 1.27859 1.06247 1.24302 1.02836 0.89190 0.97275 1.22723 0.94146 1.00559 0.93732 1.21199 0.94531 0.95983 1.02783 1.17874 0.87079 0.83201 0.77894 1.90753 1.13123 1.86804 1.49218 1.46101 1.11124 1.06201 1.72594 1.21775 0.95303 0.80475 1.02249 1.20719 0.94975 0.94949 0.95789 1.21795 0.99392 1.00121 0.97401 1.21793 1.00488 1.00012 0.96408 1.19585 0.96249 0.91464 0.96613 1.21053 0.94683 0.89285 1.50121 0.90393 1.25001 0.97273 0.96460 0.94644 1.69895 1.33939 0.99610 1.50684 0.86859 0.86433 0.77998 0.78474 1.20339 1.21451 1.18995 0.89331 0.90599 0.87558 0.80359 0.82724 0.76420 0.91240 0.91248 0.95221 0.90645 0.93230 0.93230 0.90648 0.95201 0.96281 0.96727 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.99 36.01 0.32 -0.81 16 2 C 0.12 1.48 6.91 -82.00 -0.57 0.91 16 3 N -0.25 -3.17 11.42 33.81 0.39 -2.79 16 4 N -0.23 -2.65 11.48 30.53 0.35 -2.30 16 5 C 0.03 0.23 11.30 -17.42 -0.20 0.04 16 6 C -0.08 -0.68 9.68 -38.78 -0.38 -1.05 16 7 C -0.13 -1.44 5.92 -104.57 -0.62 -2.06 16 8 C 0.55 7.11 7.74 -12.20 -0.09 7.02 16 9 O -0.52 -8.04 13.52 5.35 0.07 -7.97 16 10 N -0.71 -8.54 4.92 -61.15 -0.30 -8.84 16 11 C 0.12 1.84 4.56 -4.04 -0.02 1.82 16 12 C -0.06 -1.06 0.54 -154.51 -0.08 -1.14 16 13 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 14 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 15 C 0.00 -0.03 3.11 -27.89 -0.09 -0.11 16 16 C -0.51 -13.16 8.21 -34.44 -0.28 -13.44 16 17 H 0.08 2.11 5.92 -52.49 -0.31 1.80 16 18 C 0.07 1.85 5.47 -17.81 -0.10 1.75 16 19 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 20 Si 0.87 20.81 27.47 -169.99 -4.67 16.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.25 5.91 -51.93 -0.31 0.94 16 27 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 28 H 0.16 0.81 6.66 -52.49 -0.35 0.46 16 29 H 0.40 3.90 4.39 -40.82 -0.18 3.72 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 33 H 0.07 1.35 6.62 -51.92 -0.34 1.01 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 37 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -30.95 321.86 -5.47 -36.42 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.44 Total: 0.73 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.50 Total: -10.55 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 1.21 Total: -39.62 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.95 -5.47 -36.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557978924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.630 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds