Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31922 * 120.17342 * 2 1 4 4 N 1.28280 * 122.32731 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.51190 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.97291 * 0.02562 * 5 4 3 7 7 C 1.39724 * 120.16957 * 179.71820 * 2 1 3 8 8 C 1.48135 * 121.14749 * 359.97438 * 7 2 1 9 9 O 1.21517 * 119.99569 * 5.88403 * 8 7 2 10 10 N 1.34770 * 120.00147 * 185.87813 * 8 7 2 11 11 C 1.46509 * 120.00071 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47257 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47053 * 300.00012 * 12 11 10 14 14 C 1.53005 * 109.47039 * 60.00056 * 12 11 10 15 15 C 1.52994 * 109.46989 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.46970 * 180.02562 * 15 12 11 17 17 H 1.07996 * 120.00355 * 0.02562 * 16 15 12 18 18 C 1.37886 * 119.99926 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99956 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46780 * 90.00013 * 20 18 16 22 22 H 1.48496 * 109.46989 * 209.99752 * 20 18 16 23 23 H 1.48500 * 109.47350 * 330.00449 * 20 18 16 24 24 H 1.09000 * 109.47028 * 96.30249 * 1 2 3 25 25 H 1.09004 * 109.46672 * 336.30927 * 1 2 3 26 26 H 1.08994 * 109.47464 * 216.30641 * 1 2 3 27 27 H 1.08003 * 120.01439 * 179.97438 * 5 4 3 28 28 H 1.07998 * 121.09356 * 179.97438 * 6 5 4 29 29 H 0.96993 * 120.00313 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.46716 * 300.00203 * 11 10 8 31 31 H 1.08997 * 109.47181 * 59.99728 * 11 10 8 32 32 H 1.09005 * 109.47349 * 60.00140 * 13 12 11 33 33 H 1.09010 * 109.46910 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47109 * 299.99841 * 13 12 11 35 35 H 1.09002 * 109.47032 * 59.99475 * 14 12 11 36 36 H 1.08997 * 109.47103 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.46608 * 299.99656 * 14 12 11 38 38 H 1.09003 * 109.47195 * 299.99705 * 15 12 11 39 39 H 1.08997 * 109.47199 * 60.00144 * 15 12 11 40 40 H 0.96993 * 119.99984 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0005 5 6 4.2023 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2092 -1.2080 0.0059 8 6 1.4982 -2.5075 0.0129 9 8 0.2882 -2.5386 -0.0944 10 7 2.1934 -3.6553 0.1381 11 6 1.4902 -4.9406 0.1444 12 6 2.5043 -6.0760 0.2970 13 6 3.4902 -6.0398 -0.8723 14 6 3.2668 -5.9053 1.6125 15 6 1.7699 -7.4181 0.3043 16 6 2.7687 -8.5364 0.4553 17 1 3.8219 -8.3123 0.5382 18 6 2.3378 -9.8458 0.4886 19 7 3.2095 -10.8218 0.6208 20 14 0.5160 -10.2334 0.3472 21 1 0.1575 -10.4124 -1.0828 22 1 0.2163 -11.4823 1.0927 23 1 -0.2742 -9.1137 0.9191 24 1 -0.3633 -0.1128 -1.0215 25 1 -0.3633 0.9411 0.4129 26 1 -0.3634 -0.8281 0.6084 27 1 5.2788 0.1913 -0.0014 28 1 4.2059 -2.0479 -0.0010 29 1 3.1592 -3.6305 0.2240 30 1 0.7874 -4.9661 0.9772 31 1 0.9473 -5.0624 -0.7929 32 1 4.0135 -5.0836 -0.8770 33 1 4.2130 -6.8485 -0.7633 34 1 2.9471 -6.1614 -1.8094 35 1 2.5643 -5.9310 2.4456 36 1 3.9896 -6.7140 1.7211 37 1 3.7900 -4.9491 1.6077 38 1 1.0678 -7.4437 1.1376 39 1 1.2264 -7.5400 -0.6326 40 1 2.9064 -11.7428 0.6439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557978924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -12.718649 kcal Electronic energy + Delta-G solvation = -21324.970356 eV Core-core repulsion = 18139.093243 eV Total energy + Delta-G solvation = -3185.877113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.39762 -40.71659 -38.75887 -35.55148 -34.80275 -34.48506 -33.67826 -29.91692 -29.31410 -27.97646 -27.89589 -26.35576 -24.44471 -23.93912 -21.98711 -20.15885 -18.99345 -18.89465 -18.50623 -16.97445 -16.84261 -16.70580 -16.30224 -16.00389 -15.80782 -15.29768 -15.14451 -14.79694 -14.36515 -14.19410 -14.15753 -13.97409 -13.74630 -13.24527 -12.92707 -12.83566 -12.60684 -12.29384 -12.16315 -12.08899 -11.76820 -11.52334 -11.47526 -11.37371 -11.21547 -10.91731 -10.86463 -10.69623 -10.56111 -10.13533 -8.21649 -6.21650 -0.78148 -0.19723 1.36707 1.40161 1.49045 1.64283 1.90047 2.39735 2.50358 2.93608 3.14337 3.26890 3.30791 3.60393 3.71080 3.92471 4.06014 4.15482 4.24567 4.42970 4.49663 4.62555 4.68218 4.70862 4.77751 4.91979 4.95031 4.99734 5.08580 5.11093 5.21745 5.31557 5.35589 5.42894 5.43624 5.57258 5.71042 5.77849 6.35981 6.39551 6.85935 7.01144 7.41381 7.56020 8.93858 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034466 B = 0.003662 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.201013 B = 7644.414994 C = 8251.627905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 N -0.275 5.275 4 N -0.254 5.254 5 C 0.037 3.963 6 C -0.062 4.062 7 C -0.145 4.145 8 C 0.559 3.441 9 O -0.552 6.552 10 N -0.697 5.697 11 C 0.138 3.862 12 C -0.059 4.059 13 C -0.127 4.127 14 C -0.126 4.126 15 C -0.004 4.004 16 C -0.501 4.501 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.952 5.952 20 Si 0.932 3.068 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.250 1.250 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.221 0.779 28 H 0.193 0.807 29 H 0.413 0.587 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 20.176 -1.204 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.034 4.034 3 N -0.118 5.118 4 N -0.094 5.094 5 C -0.127 4.127 6 C -0.091 4.091 7 C -0.159 4.159 8 C 0.345 3.655 9 O -0.431 6.431 10 N -0.350 5.350 11 C 0.014 3.986 12 C -0.059 4.059 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.042 4.042 16 C -0.539 4.539 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.594 5.594 20 Si 0.758 3.242 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.174 1.174 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.238 0.762 28 H 0.210 0.790 29 H 0.252 0.748 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.296 21.625 -1.262 21.664 hybrid contribution -0.191 -2.526 -0.010 2.533 sum 0.105 19.099 -1.272 19.141 Atomic orbital electron populations 1.20929 0.86147 1.04425 1.04522 1.23289 1.00125 0.88923 0.91017 1.73051 1.02308 1.24637 1.11757 1.72779 0.99580 1.29792 1.07288 1.24971 1.04464 0.88254 0.95050 1.23158 0.92978 1.02051 0.90930 1.21056 0.95823 0.94503 1.04540 1.18057 0.86730 0.83708 0.76993 1.90751 1.14611 1.87249 1.50458 1.45835 1.11641 1.05007 1.72514 1.21403 0.94529 0.80917 1.01747 1.20568 0.95277 0.93156 0.96916 1.21739 0.98638 1.01372 0.96633 1.21736 0.99858 1.01156 0.95614 1.19571 0.95541 0.92887 0.96226 1.21385 0.94627 0.90367 1.47538 0.92841 1.25829 1.01374 0.96706 0.95178 1.70038 1.35993 0.99967 1.53354 0.85923 0.81706 0.77974 0.78617 1.19792 1.21761 1.17351 0.89393 0.89778 0.88734 0.76220 0.78959 0.74820 0.91928 0.91820 0.90936 0.93584 0.93563 0.93659 0.93565 0.91029 0.96631 0.96741 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 8.99 71.24 0.64 -1.51 16 2 C 0.11 2.52 6.91 42.91 0.30 2.82 16 3 N -0.28 -6.74 11.42 -46.95 -0.54 -7.28 16 4 N -0.25 -5.42 11.48 -57.34 -0.66 -6.07 16 5 C 0.04 0.47 11.30 84.74 0.96 1.43 16 6 C -0.06 -0.74 9.68 22.79 0.22 -0.52 16 7 C -0.14 -2.82 5.92 -19.83 -0.12 -2.94 16 8 C 0.56 12.93 7.74 86.87 0.67 13.61 16 9 O -0.55 -16.30 13.52 -3.77 -0.05 -16.35 16 10 N -0.70 -14.31 4.92 -465.69 -2.29 -16.60 16 11 C 0.14 3.72 4.56 86.38 0.39 4.12 16 12 C -0.06 -1.83 0.54 -52.18 -0.03 -1.86 16 13 C -0.13 -3.66 8.05 71.98 0.58 -3.08 16 14 C -0.13 -3.69 8.05 71.98 0.58 -3.11 16 15 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 16 C -0.50 -25.93 8.21 25.60 0.21 -25.72 16 17 H 0.05 2.98 5.92 -2.91 -0.02 2.96 16 18 C 0.01 0.30 5.47 84.66 0.46 0.76 16 19 N -0.95 -57.30 13.96 21.45 0.30 -57.00 16 20 Si 0.93 42.96 27.47 68.60 1.88 44.84 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.09 2.21 5.91 -2.39 -0.01 2.20 16 27 H 0.22 0.79 8.06 -2.91 -0.02 0.77 16 28 H 0.19 0.77 6.66 -2.91 -0.02 0.75 16 29 H 0.41 5.96 4.39 -92.71 -0.41 5.55 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.45 6.86 -2.38 -0.02 1.43 16 33 H 0.05 1.61 6.62 -2.38 -0.02 1.59 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.63 6.62 -2.39 -0.02 1.61 16 37 H 0.07 1.47 6.86 -2.38 -0.02 1.45 16 38 H 0.02 0.66 7.20 -2.39 -0.02 0.64 16 39 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -69.86 321.86 4.21 -65.66 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.60 Total: 8.91 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.96 Total: -16.10 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -3.19 Total: -86.95 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.05 Total: -16.35 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -69.86 4.21 -65.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557978924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.938 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds