Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39752 * 125.83972 * 2 1 4 4 C 1.36106 * 107.82955 * 180.02562 * 3 2 1 5 5 N 1.39472 * 126.21592 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00257 * 359.97438 * 5 4 3 7 7 O 1.21291 * 119.99837 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00258 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47314 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.54591 * 330.58726 * 9 8 6 11 11 C 1.53000 * 117.49574 * 116.25408 * 9 8 6 12 12 C 1.52997 * 117.49958 * 184.91625 * 9 8 6 13 13 H 1.09000 * 117.49686 * 359.97438 * 12 9 8 14 14 C 1.52997 * 117.49922 * 145.02147 * 12 9 8 15 15 N 1.35256 * 107.56785 * 359.97438 * 4 3 2 16 16 C 1.46500 * 126.05108 * 179.97438 * 15 4 3 17 17 C 1.50694 * 109.47517 * 89.99419 * 16 15 4 18 18 H 1.08002 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 N 1.30854 * 125.83622 * 180.31786 * 2 1 3 26 26 H 1.08999 * 109.47109 * 90.00395 * 1 2 3 27 27 H 1.09003 * 109.47460 * 210.00646 * 1 2 3 28 28 H 1.09004 * 109.47339 * 330.00540 * 1 2 3 29 29 H 1.08001 * 126.08419 * 0.06588 * 3 2 1 30 30 H 0.97007 * 119.99988 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47426 * 300.00713 * 8 6 5 32 32 H 1.09004 * 109.46577 * 59.99775 * 8 6 5 33 33 H 1.09000 * 117.49800 * 214.97742 * 11 9 8 34 34 H 1.08995 * 117.50038 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47147 * 60.00180 * 14 12 9 36 36 H 1.08996 * 109.47350 * 179.97438 * 14 12 9 37 37 H 1.08995 * 109.47081 * 300.00363 * 14 12 9 38 38 H 1.09005 * 109.46643 * 329.99951 * 16 15 4 39 39 H 1.08998 * 109.47481 * 209.99785 * 16 15 4 40 40 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7512 1.5274 -0.0013 6 6 4.6157 2.8684 -0.0020 7 8 3.5096 3.3661 -0.0015 8 6 5.8383 3.7493 -0.0021 9 6 5.4089 5.2178 -0.0036 10 1 4.4549 5.4281 -0.4872 11 6 5.7863 6.0654 1.2131 12 6 6.5084 6.2753 -0.1202 13 1 7.5378 5.9248 -0.1956 14 6 6.1846 7.5473 -0.9063 15 7 3.6092 -0.6404 -0.0004 16 6 4.7869 -1.5117 -0.0013 17 6 5.1922 -1.8102 1.4191 18 1 4.6287 -1.3929 2.2405 19 6 6.2826 -2.6159 1.6701 20 7 6.9686 -3.1243 0.6698 21 14 6.7855 -2.9853 3.4308 22 1 7.9792 -3.8685 3.4297 23 1 7.1090 -1.7158 4.1299 24 1 5.6675 -3.6657 4.1324 25 7 2.2731 -1.0608 -0.0059 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 1.9901 2.1596 0.0010 30 1 5.6358 1.1294 -0.0013 31 1 6.4334 3.5452 0.8880 32 1 6.4336 3.5443 -0.8919 33 1 5.0808 6.8336 1.5296 34 1 6.3401 5.5767 2.0146 35 1 5.3421 8.0581 -0.4399 36 1 7.0533 8.2056 -0.9061 37 1 5.9274 7.2848 -1.9324 38 1 5.6078 -1.0123 -0.5161 39 1 4.5493 -2.4434 -0.5147 40 1 7.7359 -3.6909 0.8464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562114218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = 50.475008 kcal Electronic energy + Delta-G solvation = -21060.028982 eV Core-core repulsion = 17876.892152 eV Total energy + Delta-G solvation = -3183.136830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83922 -39.38548 -37.69023 -34.67998 -33.74362 -32.07106 -30.88262 -29.12258 -28.39186 -27.24197 -26.02294 -23.00087 -22.22336 -21.01039 -20.25120 -19.64760 -19.18927 -16.99948 -16.69756 -16.28690 -15.64794 -15.29957 -14.77272 -14.49419 -14.14730 -14.10367 -13.56620 -13.27711 -12.86443 -12.78115 -12.63650 -12.49028 -12.38074 -11.98331 -11.76619 -11.56462 -11.55330 -11.45274 -11.09587 -10.87964 -10.37152 -10.32129 -10.13751 -10.00788 -9.83090 -9.77276 -9.44337 -8.72574 -7.90072 -7.41320 -6.34084 -4.42624 2.30736 2.84413 3.14114 3.17416 3.22148 3.27010 3.58959 3.64331 3.83318 4.23748 4.47988 4.60823 4.69636 4.94310 4.99248 5.11177 5.32077 5.35569 5.38516 5.51751 5.59720 5.65228 5.67435 5.72229 5.83972 6.03916 6.08143 6.17937 6.19621 6.25960 6.30580 6.46749 6.69404 6.84215 7.04838 7.53826 7.59130 7.66081 7.79540 7.94225 8.35367 8.62604 8.71917 9.24937 10.73009 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004986 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.193615 B = 5614.873621 C = 7273.203942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.302 3.698 5 N -0.642 5.642 6 C 0.521 3.479 7 O -0.515 6.515 8 C -0.106 4.106 9 C -0.135 4.135 10 H 0.120 0.880 11 C -0.174 4.174 12 C -0.155 4.155 13 H 0.104 0.896 14 C -0.122 4.122 15 N -0.345 5.345 16 C 0.257 3.743 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.275 1.275 24 H -0.273 1.273 25 N -0.287 5.287 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.161 0.839 30 H 0.416 0.584 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 15.946 -2.433 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.329 4.329 4 C 0.079 3.921 5 N -0.289 5.289 6 C 0.308 3.692 7 O -0.389 6.389 8 C -0.146 4.146 9 C -0.153 4.153 10 H 0.138 0.862 11 C -0.211 4.211 12 C -0.173 4.173 13 H 0.122 0.878 14 C -0.179 4.179 15 N -0.131 5.131 16 C 0.139 3.861 17 C -0.579 4.579 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.200 1.200 24 H -0.199 1.199 25 N -0.112 5.112 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.178 0.822 30 H 0.253 0.747 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.808 14.854 -2.494 15.084 hybrid contribution 1.091 0.142 1.023 1.503 sum 0.283 14.996 -1.470 15.071 Atomic orbital electron populations 1.20015 0.87632 1.02415 1.02005 1.22027 0.96491 0.91077 1.01870 1.21265 0.89100 1.00407 1.22079 1.17966 0.88157 0.83336 1.02596 1.42866 1.08195 1.05742 1.72104 1.20566 0.91634 0.81165 0.75841 1.90615 1.26992 1.73662 1.47604 1.21194 0.95645 0.92837 1.04957 1.22146 1.00127 0.89780 1.03245 0.86227 1.23231 1.03216 1.03181 0.91440 1.22444 0.97250 0.97712 0.99939 0.87798 1.21352 1.01394 0.95438 0.99748 1.49339 1.06505 1.02225 1.55005 1.19603 0.77847 0.89756 0.98867 1.21309 1.13283 1.31990 0.91363 0.91775 1.24933 0.95687 0.94853 0.98179 1.69910 1.19158 1.32618 1.31107 0.86404 0.78102 0.78498 0.83648 1.20885 1.19997 1.19855 1.77348 0.86174 1.21833 1.25890 0.91405 0.91527 0.91160 0.82175 0.74740 0.88239 0.88050 0.88750 0.88785 0.92527 0.92283 0.92146 0.93849 0.92580 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 3 C -0.30 -6.20 9.58 -39.78 -0.38 -6.59 16 4 C 0.30 6.47 7.66 -153.17 -1.17 5.29 16 5 N -0.64 -11.24 5.42 -11.46 -0.06 -11.30 16 6 C 0.52 8.12 7.79 -10.99 -0.09 8.03 16 7 O -0.51 -9.37 12.69 5.55 0.07 -9.30 16 8 C -0.11 -1.16 5.98 -27.88 -0.17 -1.33 16 9 C -0.13 -1.44 5.13 -90.62 -0.46 -1.91 16 10 H 0.12 1.48 7.31 -51.93 -0.38 1.10 16 11 C -0.17 -1.67 9.83 -26.69 -0.26 -1.93 16 12 C -0.16 -1.36 6.13 -90.58 -0.56 -1.91 16 13 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.12 -0.94 10.19 37.16 0.38 -0.56 16 15 N -0.35 -8.21 3.60 -61.58 -0.22 -8.43 16 16 C 0.26 6.46 6.01 -5.20 -0.03 6.43 16 17 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 18 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 21 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 N -0.29 -6.81 12.57 33.65 0.42 -6.38 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.16 3.26 5.83 -52.49 -0.31 2.96 16 30 H 0.42 6.67 7.97 -40.82 -0.33 6.34 16 31 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -31.24 340.93 -8.30 -39.54 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.98 Total: 6.50 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.38 Total: -7.83 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.88 Total: -49.68 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.24 -8.30 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.010 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds