Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39752 * 125.83972 * 2 1 4 4 C 1.36106 * 107.82955 * 180.02562 * 3 2 1 5 5 N 1.39472 * 126.21592 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00257 * 359.97438 * 5 4 3 7 7 O 1.21291 * 119.99837 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00258 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47314 * 179.97438 * 8 6 5 10 10 H 1.09004 * 115.54591 * 330.58726 * 9 8 6 11 11 C 1.53000 * 117.49574 * 116.25408 * 9 8 6 12 12 C 1.52997 * 117.49958 * 184.91625 * 9 8 6 13 13 H 1.09000 * 117.49686 * 359.97438 * 12 9 8 14 14 C 1.52997 * 117.49922 * 145.02147 * 12 9 8 15 15 N 1.35256 * 107.56785 * 359.97438 * 4 3 2 16 16 C 1.46500 * 126.05108 * 179.97438 * 15 4 3 17 17 C 1.50694 * 109.47517 * 89.99419 * 16 15 4 18 18 H 1.08002 * 120.00179 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 N 1.30854 * 125.83622 * 180.31786 * 2 1 3 26 26 H 1.08999 * 109.47109 * 90.00395 * 1 2 3 27 27 H 1.09003 * 109.47460 * 210.00646 * 1 2 3 28 28 H 1.09004 * 109.47339 * 330.00540 * 1 2 3 29 29 H 1.08001 * 126.08419 * 0.06588 * 3 2 1 30 30 H 0.97007 * 119.99988 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47426 * 300.00713 * 8 6 5 32 32 H 1.09004 * 109.46577 * 59.99775 * 8 6 5 33 33 H 1.09000 * 117.49800 * 214.97742 * 11 9 8 34 34 H 1.08995 * 117.50038 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47147 * 60.00180 * 14 12 9 36 36 H 1.08996 * 109.47350 * 179.97438 * 14 12 9 37 37 H 1.08995 * 109.47081 * 300.00363 * 14 12 9 38 38 H 1.09005 * 109.46643 * 329.99951 * 16 15 4 39 39 H 1.08998 * 109.47481 * 209.99785 * 16 15 4 40 40 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7512 1.5274 -0.0013 6 6 4.6157 2.8684 -0.0020 7 8 3.5096 3.3661 -0.0015 8 6 5.8383 3.7493 -0.0021 9 6 5.4089 5.2178 -0.0036 10 1 4.4549 5.4281 -0.4872 11 6 5.7863 6.0654 1.2131 12 6 6.5084 6.2753 -0.1202 13 1 7.5378 5.9248 -0.1956 14 6 6.1846 7.5473 -0.9063 15 7 3.6092 -0.6404 -0.0004 16 6 4.7869 -1.5117 -0.0013 17 6 5.1922 -1.8102 1.4191 18 1 4.6287 -1.3929 2.2405 19 6 6.2826 -2.6159 1.6701 20 7 6.9686 -3.1243 0.6698 21 14 6.7855 -2.9853 3.4308 22 1 7.9792 -3.8685 3.4297 23 1 7.1090 -1.7158 4.1299 24 1 5.6675 -3.6657 4.1324 25 7 2.2731 -1.0608 -0.0059 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 1.9901 2.1596 0.0010 30 1 5.6358 1.1294 -0.0013 31 1 6.4334 3.5452 0.8880 32 1 6.4336 3.5443 -0.8919 33 1 5.0808 6.8336 1.5296 34 1 6.3401 5.5767 2.0146 35 1 5.3421 8.0581 -0.4399 36 1 7.0533 8.2056 -0.9061 37 1 5.9274 7.2848 -1.9324 38 1 5.6078 -1.0123 -0.5161 39 1 4.5493 -2.4434 -0.5147 40 1 7.7359 -3.6909 0.8464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562114218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = 32.644657 kcal Electronic energy + Delta-G solvation = -21060.802164 eV Core-core repulsion = 17876.892152 eV Total energy + Delta-G solvation = -3183.910012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41759 -40.70215 -38.56296 -36.24580 -35.57476 -33.83975 -31.90684 -30.69020 -29.71337 -28.23780 -27.80825 -24.81368 -23.50933 -21.96494 -21.30477 -20.99600 -20.61680 -18.89299 -18.39224 -17.67144 -16.89295 -16.68595 -16.33664 -15.75521 -15.70772 -15.30599 -14.71956 -14.50631 -14.38452 -14.05327 -13.91186 -13.71238 -13.43306 -13.38680 -13.12835 -13.03240 -12.89200 -12.70895 -12.32530 -12.29211 -12.17417 -11.92407 -11.69590 -11.47194 -10.93310 -10.85353 -10.76840 -10.59203 -9.63783 -9.06248 -8.37137 -6.54879 0.81388 1.35024 1.37302 1.39667 1.48417 1.65789 2.06750 2.20638 2.35489 2.87045 2.93303 3.52810 3.70304 3.83196 3.96235 4.11315 4.23849 4.46283 4.52043 4.57315 4.62640 4.70870 4.74724 4.83197 4.88666 4.90670 4.95904 4.96664 4.99884 5.01812 5.21109 5.23957 5.24551 5.35214 5.49963 5.51413 5.76111 5.95966 6.17006 6.30917 6.56412 6.98649 7.05297 7.17402 8.69185 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004986 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.193615 B = 5614.873621 C = 7273.203942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.310 4.310 4 C 0.300 3.700 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.542 6.542 8 C -0.095 4.095 9 C -0.152 4.152 10 H 0.098 0.902 11 C -0.178 4.178 12 C -0.138 4.138 13 H 0.119 0.881 14 C -0.125 4.125 15 N -0.368 5.368 16 C 0.273 3.727 17 C -0.558 4.558 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.969 3.031 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.279 1.279 25 N -0.334 5.334 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.422 0.578 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 17.321 -1.766 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.342 4.342 4 C 0.077 3.923 5 N -0.290 5.290 6 C 0.309 3.691 7 O -0.417 6.417 8 C -0.134 4.134 9 C -0.171 4.171 10 H 0.117 0.883 11 C -0.215 4.215 12 C -0.156 4.156 13 H 0.137 0.863 14 C -0.182 4.182 15 N -0.153 5.153 16 C 0.154 3.846 17 C -0.596 4.596 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.189 1.189 24 H -0.205 1.205 25 N -0.159 5.159 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.184 0.816 30 H 0.260 0.740 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.114 16.255 -1.838 16.359 hybrid contribution 0.741 -0.203 0.769 1.087 sum 0.855 16.052 -1.069 16.111 Atomic orbital electron populations 1.20222 0.83938 1.03860 1.03869 1.22888 0.98739 0.90081 0.99003 1.21471 0.89161 1.00746 1.22825 1.18390 0.89795 0.82854 1.01280 1.43115 1.07437 1.06161 1.72267 1.21530 0.92853 0.80505 0.74196 1.90590 1.28637 1.73853 1.48627 1.21267 0.93504 0.91668 1.06975 1.22062 1.00332 0.90089 1.04631 0.88335 1.23321 1.03465 1.02921 0.91775 1.22550 0.97197 0.96943 0.98887 0.86289 1.21399 1.01984 0.95257 0.99553 1.49164 1.06283 1.02924 1.56947 1.19219 0.78627 0.88964 0.97808 1.21375 1.13755 1.32858 0.91606 0.93536 1.25674 0.95329 0.94220 1.02071 1.69984 1.19442 1.32738 1.32943 0.85444 0.77748 0.78720 0.78814 1.19586 1.18900 1.20457 1.77296 0.86509 1.23650 1.28427 0.89205 0.90886 0.88863 0.81593 0.74037 0.86351 0.85575 0.88822 0.88108 0.92803 0.90840 0.92116 0.93304 0.95595 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.23 0.74 -1.00 16 2 C 0.06 2.38 7.21 43.07 0.31 2.69 16 3 C -0.31 -13.01 9.58 22.14 0.21 -12.80 16 4 C 0.30 13.00 7.66 131.32 1.01 14.01 16 5 N -0.64 -22.39 5.42 -308.57 -1.67 -24.06 16 6 C 0.52 15.83 7.79 87.66 0.68 16.51 16 7 O -0.54 -19.65 12.69 -3.06 -0.04 -19.69 16 8 C -0.09 -1.89 5.98 29.85 0.18 -1.71 16 9 C -0.15 -3.05 5.13 -10.79 -0.06 -3.10 16 10 H 0.10 2.41 7.31 -2.38 -0.02 2.40 16 11 C -0.18 -3.09 9.83 30.62 0.30 -2.79 16 12 C -0.14 -2.07 6.13 -10.77 -0.07 -2.14 16 13 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.12 -1.67 10.19 71.98 0.73 -0.94 16 15 N -0.37 -17.97 3.60 -348.73 -1.26 -19.22 16 16 C 0.27 14.16 6.01 85.63 0.51 14.68 16 17 C -0.56 -30.64 9.39 25.60 0.24 -30.40 16 18 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 19 C 0.03 1.53 5.46 84.66 0.46 2.00 16 20 N -0.91 -49.88 13.29 21.45 0.28 -49.59 16 21 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 N -0.33 -16.19 12.57 -47.45 -0.60 -16.78 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.17 6.74 5.83 -2.91 -0.02 6.72 16 30 H 0.42 13.42 7.97 -92.70 -0.74 12.68 16 31 H 0.12 1.97 7.88 -2.39 -0.02 1.95 16 32 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 34 H 0.10 1.61 8.03 -2.39 -0.02 1.59 16 35 H 0.05 0.74 7.90 -2.39 -0.02 0.73 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 2.43 7.50 -2.38 -0.02 2.41 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -68.15 340.93 4.32 -63.83 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.31 Total: 26.53 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.26 Total: -4.99 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.24 Total: -109.65 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.15 4.32 -63.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.474 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds