Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39751 * 125.83633 * 2 1 4 4 C 1.36116 * 107.82342 * 180.13479 * 3 2 1 5 5 N 1.39479 * 126.21304 * 179.89754 * 4 3 2 6 6 C 1.34774 * 119.99995 * 359.69826 * 5 4 3 7 7 O 1.21289 * 120.00288 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47300 * 179.97438 * 8 6 5 10 10 H 1.08995 * 115.56348 * 29.31383 * 9 8 6 11 11 C 1.52999 * 117.50039 * 243.62611 * 9 8 6 12 12 C 1.53001 * 117.49948 * 175.00103 * 9 8 6 13 13 H 1.09002 * 117.49822 * 0.02562 * 12 9 8 14 14 C 1.53003 * 117.51964 * 214.97183 * 12 9 8 15 15 N 1.35260 * 107.56849 * 359.64433 * 4 3 2 16 16 C 1.46494 * 126.04886 * 180.22315 * 15 4 3 17 17 C 1.50699 * 109.47239 * 89.99316 * 16 15 4 18 18 H 1.08006 * 119.99617 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00237 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00007 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47283 * 60.00529 * 21 19 17 23 23 H 1.48498 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47274 * 299.99973 * 21 19 17 25 25 N 1.30848 * 125.83226 * 179.73332 * 2 1 3 26 26 H 1.08998 * 109.47297 * 270.29080 * 1 2 3 27 27 H 1.09003 * 109.46994 * 30.28617 * 1 2 3 28 28 H 1.09001 * 109.46869 * 150.28705 * 1 2 3 29 29 H 1.07999 * 126.08921 * 0.02819 * 3 2 1 30 30 H 0.96995 * 119.99491 * 179.69326 * 5 4 3 31 31 H 1.09001 * 109.46947 * 59.99641 * 8 6 5 32 32 H 1.08998 * 109.47057 * 300.00349 * 8 6 5 33 33 H 1.09004 * 117.50150 * 145.02446 * 11 9 8 34 34 H 1.09004 * 117.49681 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46919 * 300.12409 * 14 12 9 36 36 H 1.09001 * 109.47034 * 60.11816 * 14 12 9 37 37 H 1.08995 * 109.47274 * 180.11584 * 14 12 9 38 38 H 1.09000 * 109.47432 * 209.99988 * 16 15 4 39 39 H 1.09002 * 109.46978 * 330.00132 * 16 15 4 40 40 H 0.96998 * 120.00104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7120 -0.0030 5 7 4.7514 1.5274 -0.0061 6 6 4.6158 2.8683 -0.0123 7 8 3.5097 3.3660 -0.0158 8 6 5.8384 3.7493 -0.0151 9 6 5.4090 5.2177 -0.0228 10 1 4.4535 5.4308 0.4562 11 6 5.7910 6.0590 -1.2423 12 6 6.5082 6.2758 0.0917 13 1 7.5373 5.9257 0.1721 14 6 6.1824 7.5523 0.8697 15 7 3.6093 -0.6405 0.0031 16 6 4.7870 -1.5117 0.0072 17 6 5.1908 -1.8039 1.4293 18 1 4.6263 -1.3830 2.2483 19 6 6.2803 -2.6093 1.6850 20 7 6.9674 -3.1222 0.6878 21 14 6.7804 -2.9719 3.4479 22 1 5.6611 -3.6489 4.1507 23 1 7.9743 -3.8550 3.4520 24 1 7.1039 -1.6998 4.1424 25 7 2.2731 -1.0608 0.0049 26 1 -0.3634 0.0052 1.0276 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3633 -0.8926 -0.5094 29 1 1.9902 2.1597 0.0004 30 1 5.6359 1.1294 -0.0036 31 1 6.4346 3.5407 -0.9034 32 1 6.4327 3.5488 0.8764 33 1 5.0867 6.8257 -1.5655 34 1 6.3486 5.5664 -2.0389 35 1 5.3401 8.0596 0.3991 36 1 5.9240 7.2957 1.8971 37 1 7.0508 8.2110 0.8672 38 1 4.5499 -2.4456 -0.5024 39 1 5.6084 -1.0146 -0.5089 40 1 7.7340 -3.6885 0.8677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562114256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 50.473704 kcal Electronic energy + Delta-G solvation = -21056.126065 eV Core-core repulsion = 17872.989179 eV Total energy + Delta-G solvation = -3183.136886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83858 -39.38722 -37.69727 -34.68017 -33.74349 -32.07056 -30.88183 -29.12167 -28.39053 -27.24234 -26.02277 -23.00158 -22.22576 -21.01368 -20.25308 -19.64817 -19.18941 -17.00796 -16.67900 -16.28976 -15.69451 -15.25426 -14.76778 -14.42618 -14.33281 -14.00960 -13.56029 -13.26944 -12.85344 -12.77003 -12.66218 -12.49245 -12.36684 -11.99540 -11.76140 -11.56790 -11.55693 -11.45562 -11.09448 -10.87857 -10.37229 -10.31958 -10.14478 -10.00721 -9.83112 -9.77186 -9.44355 -8.72504 -7.90065 -7.41272 -6.33981 -4.42575 2.30705 2.84783 3.13591 3.17589 3.22237 3.27183 3.57871 3.65801 3.83089 4.23881 4.47549 4.60557 4.69354 4.94079 4.99345 5.11576 5.30717 5.34722 5.38383 5.54104 5.60359 5.64081 5.66378 5.71396 5.84694 6.04919 6.07604 6.17579 6.19484 6.25895 6.30644 6.46689 6.69368 6.84235 7.04898 7.53859 7.59147 7.66124 7.79551 7.94228 8.35373 8.62614 8.71959 9.25032 10.73118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.004987 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.557292 B = 5613.493190 C = 7268.352868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.302 3.698 5 N -0.642 5.642 6 C 0.521 3.479 7 O -0.515 6.515 8 C -0.106 4.106 9 C -0.134 4.134 10 H 0.120 0.880 11 C -0.174 4.174 12 C -0.155 4.155 13 H 0.104 0.896 14 C -0.122 4.122 15 N -0.345 5.345 16 C 0.257 3.743 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.275 1.275 25 N -0.287 5.287 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.161 0.839 30 H 0.416 0.584 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 15.936 -2.348 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.079 3.921 5 N -0.289 5.289 6 C 0.308 3.692 7 O -0.389 6.389 8 C -0.146 4.146 9 C -0.153 4.153 10 H 0.138 0.862 11 C -0.211 4.211 12 C -0.173 4.173 13 H 0.122 0.878 14 C -0.180 4.180 15 N -0.131 5.131 16 C 0.139 3.861 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.200 1.200 25 N -0.112 5.112 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.253 0.747 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.809 14.844 -2.403 15.059 hybrid contribution 1.092 0.145 0.923 1.437 sum 0.283 14.989 -1.480 15.065 Atomic orbital electron populations 1.20017 0.87629 1.02293 1.02123 1.22030 0.96493 0.91082 1.01867 1.21265 0.89097 1.00406 1.22075 1.17973 0.88156 0.83338 1.02596 1.42863 1.08195 1.05744 1.72102 1.20563 0.91633 0.81166 0.75841 1.90614 1.26993 1.73658 1.47608 1.21192 0.95648 0.92827 1.04961 1.22148 1.00167 0.89829 1.03147 0.86204 1.23219 1.03240 1.03236 0.91389 1.22434 0.97304 0.97674 0.99910 0.87792 1.21356 1.01372 0.95382 0.99851 1.49341 1.06505 1.02228 1.55004 1.19604 0.77849 0.89765 0.98860 1.21312 1.13320 1.31973 0.91349 0.91774 1.24930 0.95679 0.94835 0.98195 1.69906 1.19158 1.32529 1.31208 0.86405 0.78094 0.78493 0.83663 1.19855 1.20888 1.19992 1.77347 0.86171 1.21835 1.25875 0.91341 0.91175 0.91578 0.82174 0.74742 0.88387 0.87896 0.88755 0.88852 0.92528 0.92112 0.92280 0.92586 0.93841 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.20 9.58 -39.78 -0.38 -6.58 16 4 C 0.30 6.46 7.66 -153.15 -1.17 5.29 16 5 N -0.64 -11.24 5.42 -11.46 -0.06 -11.30 16 6 C 0.52 8.12 7.79 -10.99 -0.09 8.03 16 7 O -0.51 -9.37 12.69 5.55 0.07 -9.30 16 8 C -0.11 -1.16 5.98 -27.89 -0.17 -1.33 16 9 C -0.13 -1.44 5.14 -90.62 -0.47 -1.91 16 10 H 0.12 1.50 7.30 -51.93 -0.38 1.12 16 11 C -0.17 -1.62 9.82 -26.73 -0.26 -1.88 16 12 C -0.16 -1.36 6.13 -90.61 -0.56 -1.92 16 13 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.12 -0.96 10.19 37.16 0.38 -0.58 16 15 N -0.35 -8.21 3.60 -61.57 -0.22 -8.43 16 16 C 0.26 6.46 6.01 -5.20 -0.03 6.43 16 17 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 18 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 21 Si 0.91 20.67 29.54 -169.99 -5.02 15.64 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 N -0.29 -6.80 12.57 33.65 0.42 -6.38 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.16 3.26 5.83 -52.49 -0.31 2.95 16 30 H 0.42 6.66 7.96 -40.82 -0.33 6.34 16 31 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -31.23 340.92 -8.30 -39.53 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.98 Total: 6.48 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.38 Total: -7.80 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.88 Total: -49.68 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.23 -8.30 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.001 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds