Wall clock time and date at job start Mon Mar 30 2020 02:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39751 * 125.83633 * 2 1 4 4 C 1.36116 * 107.82342 * 180.13479 * 3 2 1 5 5 N 1.39479 * 126.21304 * 179.89754 * 4 3 2 6 6 C 1.34774 * 119.99995 * 359.69826 * 5 4 3 7 7 O 1.21289 * 120.00288 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47300 * 179.97438 * 8 6 5 10 10 H 1.08995 * 115.56348 * 29.31383 * 9 8 6 11 11 C 1.52999 * 117.50039 * 243.62611 * 9 8 6 12 12 C 1.53001 * 117.49948 * 175.00103 * 9 8 6 13 13 H 1.09002 * 117.49822 * 0.02562 * 12 9 8 14 14 C 1.53003 * 117.51964 * 214.97183 * 12 9 8 15 15 N 1.35260 * 107.56849 * 359.64433 * 4 3 2 16 16 C 1.46494 * 126.04886 * 180.22315 * 15 4 3 17 17 C 1.50699 * 109.47239 * 89.99316 * 16 15 4 18 18 H 1.08006 * 119.99617 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00237 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99924 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00007 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47283 * 60.00529 * 21 19 17 23 23 H 1.48498 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47274 * 299.99973 * 21 19 17 25 25 N 1.30848 * 125.83226 * 179.73332 * 2 1 3 26 26 H 1.08998 * 109.47297 * 270.29080 * 1 2 3 27 27 H 1.09003 * 109.46994 * 30.28617 * 1 2 3 28 28 H 1.09001 * 109.46869 * 150.28705 * 1 2 3 29 29 H 1.07999 * 126.08921 * 0.02819 * 3 2 1 30 30 H 0.96995 * 119.99491 * 179.69326 * 5 4 3 31 31 H 1.09001 * 109.46947 * 59.99641 * 8 6 5 32 32 H 1.08998 * 109.47057 * 300.00349 * 8 6 5 33 33 H 1.09004 * 117.50150 * 145.02446 * 11 9 8 34 34 H 1.09004 * 117.49681 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46919 * 300.12409 * 14 12 9 36 36 H 1.09001 * 109.47034 * 60.11816 * 14 12 9 37 37 H 1.08995 * 109.47274 * 180.11584 * 14 12 9 38 38 H 1.09000 * 109.47432 * 209.99988 * 16 15 4 39 39 H 1.09002 * 109.46978 * 330.00132 * 16 15 4 40 40 H 0.96998 * 120.00104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7120 -0.0030 5 7 4.7514 1.5274 -0.0061 6 6 4.6158 2.8683 -0.0123 7 8 3.5097 3.3660 -0.0158 8 6 5.8384 3.7493 -0.0151 9 6 5.4090 5.2177 -0.0228 10 1 4.4535 5.4308 0.4562 11 6 5.7910 6.0590 -1.2423 12 6 6.5082 6.2758 0.0917 13 1 7.5373 5.9257 0.1721 14 6 6.1824 7.5523 0.8697 15 7 3.6093 -0.6405 0.0031 16 6 4.7870 -1.5117 0.0072 17 6 5.1908 -1.8039 1.4293 18 1 4.6263 -1.3830 2.2483 19 6 6.2803 -2.6093 1.6850 20 7 6.9674 -3.1222 0.6878 21 14 6.7804 -2.9719 3.4479 22 1 5.6611 -3.6489 4.1507 23 1 7.9743 -3.8550 3.4520 24 1 7.1039 -1.6998 4.1424 25 7 2.2731 -1.0608 0.0049 26 1 -0.3634 0.0052 1.0276 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3633 -0.8926 -0.5094 29 1 1.9902 2.1597 0.0004 30 1 5.6359 1.1294 -0.0036 31 1 6.4346 3.5407 -0.9034 32 1 6.4327 3.5488 0.8764 33 1 5.0867 6.8257 -1.5655 34 1 6.3486 5.5664 -2.0389 35 1 5.3401 8.0596 0.3991 36 1 5.9240 7.2957 1.8971 37 1 7.0508 8.2110 0.8672 38 1 4.5499 -2.4456 -0.5024 39 1 5.6084 -1.0146 -0.5089 40 1 7.7340 -3.6885 0.8677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562114256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:07 Heat of formation + Delta-G solvation = 32.645555 kcal Electronic energy + Delta-G solvation = -21056.899152 eV Core-core repulsion = 17872.989179 eV Total energy + Delta-G solvation = -3183.909973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41668 -40.70238 -38.56568 -36.24567 -35.57458 -33.83936 -31.90720 -30.68951 -29.71399 -28.23782 -27.80817 -24.81340 -23.50690 -21.96149 -21.30487 -20.99753 -20.61647 -18.89581 -18.38499 -17.67288 -16.88990 -16.74073 -16.20779 -15.90754 -15.64002 -15.31071 -14.71588 -14.48029 -14.39162 -14.04923 -13.91668 -13.73063 -13.43346 -13.37896 -13.15080 -13.00631 -12.89703 -12.70801 -12.32027 -12.29196 -12.17344 -11.92410 -11.69562 -11.47179 -10.93210 -10.85591 -10.76780 -10.58799 -9.63882 -9.06215 -8.37042 -6.54818 0.81345 1.35223 1.37485 1.39677 1.48470 1.65676 2.06850 2.20739 2.35445 2.87600 2.93412 3.52843 3.70373 3.83198 3.96989 4.11109 4.23895 4.46005 4.51410 4.57488 4.62747 4.71525 4.75441 4.83132 4.88307 4.90778 4.95859 4.96643 4.99300 5.01920 5.21068 5.23915 5.24571 5.35518 5.50013 5.51140 5.76116 5.95959 6.17035 6.30967 6.56461 6.98675 7.05335 7.17506 8.69288 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.004987 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.557292 B = 5613.493190 C = 7268.352868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.310 4.310 4 C 0.300 3.700 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.542 6.542 8 C -0.095 4.095 9 C -0.154 4.154 10 H 0.097 0.903 11 C -0.173 4.173 12 C -0.140 4.140 13 H 0.119 0.881 14 C -0.125 4.125 15 N -0.368 5.368 16 C 0.273 3.727 17 C -0.558 4.558 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.969 3.031 22 H -0.279 1.279 23 H -0.271 1.271 24 H -0.264 1.264 25 N -0.334 5.334 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.422 0.578 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 17.307 -1.784 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.342 4.342 4 C 0.077 3.923 5 N -0.290 5.290 6 C 0.309 3.691 7 O -0.417 6.417 8 C -0.134 4.134 9 C -0.173 4.173 10 H 0.115 0.885 11 C -0.210 4.210 12 C -0.158 4.158 13 H 0.137 0.863 14 C -0.182 4.182 15 N -0.153 5.153 16 C 0.154 3.846 17 C -0.596 4.596 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.196 1.196 24 H -0.189 1.189 25 N -0.159 5.159 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.184 0.816 30 H 0.260 0.740 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.122 16.241 -1.850 16.346 hybrid contribution 0.740 -0.197 0.709 1.043 sum 0.861 16.044 -1.141 16.107 Atomic orbital electron populations 1.20224 0.83936 1.04033 1.03693 1.22890 0.98739 0.90082 0.99007 1.21473 0.89162 1.00746 1.22817 1.18396 0.89794 0.82856 1.01279 1.43113 1.07436 1.06161 1.72266 1.21529 0.92855 0.80506 0.74196 1.90590 1.28641 1.73850 1.48628 1.21263 0.93498 0.91660 1.06968 1.22055 1.00250 0.90152 1.04820 0.88522 1.23314 1.03298 1.02799 0.91622 1.22541 0.97243 0.96875 0.99165 0.86327 1.21402 1.01995 0.95294 0.99547 1.49166 1.06283 1.02927 1.56942 1.19219 0.78630 0.88968 0.97806 1.21379 1.13789 1.32833 0.91602 0.93531 1.25670 0.95316 0.94197 1.02089 1.69980 1.19441 1.32650 1.33042 0.85446 0.77748 0.78721 0.78823 1.20448 1.19588 1.18911 1.77295 0.86509 1.23657 1.28404 0.89702 0.88631 0.90628 0.81595 0.74040 0.85891 0.86050 0.88773 0.87798 0.92724 0.92345 0.90827 0.95599 0.93294 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.38 7.21 43.07 0.31 2.69 16 3 C -0.31 -13.01 9.58 22.14 0.21 -12.80 16 4 C 0.30 13.00 7.66 131.32 1.01 14.01 16 5 N -0.64 -22.39 5.42 -308.56 -1.67 -24.06 16 6 C 0.52 15.84 7.79 87.66 0.68 16.52 16 7 O -0.54 -19.66 12.69 -3.06 -0.04 -19.70 16 8 C -0.09 -1.88 5.98 29.85 0.18 -1.70 16 9 C -0.15 -3.08 5.14 -10.79 -0.06 -3.14 16 10 H 0.10 2.41 7.30 -2.39 -0.02 2.39 16 11 C -0.17 -2.88 9.82 30.60 0.30 -2.58 16 12 C -0.14 -2.12 6.13 -10.79 -0.07 -2.19 16 13 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 14 C -0.13 -1.72 10.19 71.98 0.73 -0.99 16 15 N -0.37 -17.97 3.60 -348.72 -1.26 -19.22 16 16 C 0.27 14.16 6.01 85.63 0.51 14.67 16 17 C -0.56 -30.65 9.39 25.60 0.24 -30.41 16 18 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 19 C 0.03 1.55 5.46 84.65 0.46 2.01 16 20 N -0.91 -49.88 13.29 21.45 0.28 -49.59 16 21 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 N -0.33 -16.18 12.57 -47.45 -0.60 -16.78 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.17 6.74 5.83 -2.91 -0.02 6.72 16 30 H 0.42 13.42 7.96 -92.71 -0.74 12.68 16 31 H 0.12 1.88 7.87 -2.39 -0.02 1.86 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.10 1.50 8.03 -2.38 -0.02 1.48 16 35 H 0.05 0.77 7.90 -2.39 -0.02 0.75 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 2.43 7.50 -2.39 -0.02 2.42 16 40 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -68.16 340.92 4.32 -63.84 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.31 Total: 26.43 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.26 Total: -4.90 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.24 Total: -109.65 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.70 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -68.16 4.32 -63.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.488 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds