Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39757 * 125.83710 * 2 1 4 4 C 1.36104 * 107.82884 * 180.14225 * 3 2 1 5 5 N 1.39468 * 126.22230 * 179.84532 * 4 3 2 6 6 C 1.34780 * 119.99521 * 359.69120 * 5 4 3 7 7 O 1.21289 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47357 * 179.97438 * 8 6 5 10 10 H 1.08998 * 115.55561 * 330.68897 * 9 8 6 11 11 C 1.53079 * 117.51408 * 116.38795 * 9 8 6 12 12 C 1.52993 * 117.50041 * 184.99743 * 9 8 6 13 13 H 1.08998 * 117.50110 * 144.99737 * 12 9 8 14 14 C 1.53006 * 117.50097 * 0.02562 * 12 9 8 15 15 N 1.35264 * 107.56647 * 359.58196 * 4 3 2 16 16 C 1.46500 * 126.04987 * 180.22434 * 15 4 3 17 17 C 1.50703 * 109.46756 * 90.00268 * 16 15 4 18 18 H 1.08000 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99968 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47421 * 89.99586 * 21 19 17 23 23 H 1.48502 * 109.47007 * 209.99588 * 21 19 17 24 24 H 1.48504 * 109.47119 * 329.99451 * 21 19 17 25 25 N 1.30842 * 125.83597 * 179.66828 * 2 1 3 26 26 H 1.08998 * 109.47717 * 270.30137 * 1 2 3 27 27 H 1.09004 * 109.46808 * 30.30165 * 1 2 3 28 28 H 1.09001 * 109.46974 * 150.30002 * 1 2 3 29 29 H 1.08002 * 126.08547 * 359.97438 * 3 2 1 30 30 H 0.96995 * 120.00662 * 179.68975 * 5 4 3 31 31 H 1.09005 * 109.47493 * 59.99612 * 8 6 5 32 32 H 1.09001 * 109.46952 * 299.99818 * 8 6 5 33 33 H 1.09002 * 117.50988 * 359.97438 * 11 9 8 34 34 H 1.08998 * 117.51393 * 214.95588 * 11 9 8 35 35 H 1.08998 * 109.47045 * 300.08696 * 14 12 9 36 36 H 1.09000 * 109.47000 * 60.08646 * 14 12 9 37 37 H 1.08997 * 109.46958 * 180.08764 * 14 12 9 38 38 H 1.08996 * 109.47440 * 210.00283 * 16 15 4 39 39 H 1.08998 * 109.47415 * 330.00589 * 16 15 4 40 40 H 0.97004 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5274 -0.0073 6 6 4.6156 2.8684 -0.0147 7 8 3.5095 3.3661 -0.0183 8 6 5.8383 3.7494 -0.0198 9 6 5.4088 5.2179 -0.0285 10 1 4.4539 5.4256 -0.5112 11 6 5.7893 6.0731 1.1827 12 6 6.5081 6.2746 -0.1528 13 1 6.2766 7.1776 -0.7177 14 6 7.9528 5.7821 -0.2595 15 7 3.6092 -0.6404 0.0042 16 6 4.7870 -1.5116 0.0086 17 6 5.1913 -1.8025 1.4310 18 1 4.6270 -1.3809 2.2497 19 6 6.2815 -2.6068 1.6870 20 7 6.9683 -3.1205 0.6900 21 14 6.7822 -2.9680 3.4501 22 1 6.0828 -4.1896 3.9229 23 1 8.2503 -3.1822 3.5137 24 1 6.4116 -1.8192 4.3151 25 7 2.2730 -1.0607 0.0061 26 1 -0.3634 0.0054 1.0276 27 1 -0.3633 0.8873 -0.5185 28 1 -0.3633 -0.8927 -0.5092 29 1 1.9901 2.1597 -0.0004 30 1 5.6358 1.1295 -0.0049 31 1 6.4334 3.5399 -0.9087 32 1 6.4335 3.5498 0.8713 33 1 6.3452 5.5894 1.9859 34 1 5.0849 6.8435 1.4964 35 1 8.2063 5.2044 0.6293 36 1 8.0580 5.1535 -1.1438 37 1 8.6233 6.6377 -0.3401 38 1 4.5497 -2.4459 -0.5000 39 1 5.6082 -1.0150 -0.5081 40 1 7.7350 -3.6867 0.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562114257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 51.181562 kcal Electronic energy + Delta-G solvation = -21187.156993 eV Core-core repulsion = 18004.050802 eV Total energy + Delta-G solvation = -3183.106191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84218 -39.42315 -37.75221 -34.68125 -33.74417 -32.06678 -30.46136 -29.07476 -28.52166 -27.59077 -26.02503 -23.00465 -22.22334 -21.33191 -19.84910 -19.47597 -19.04536 -17.09491 -16.79343 -16.34882 -15.79216 -15.34478 -14.80877 -14.24671 -14.18914 -13.96314 -13.78237 -13.20093 -12.87163 -12.79431 -12.73424 -12.48856 -12.25227 -11.97352 -11.76692 -11.66229 -11.56442 -11.37250 -11.07670 -10.89960 -10.36894 -10.32205 -10.06396 -10.00067 -9.81839 -9.80111 -9.44556 -8.73007 -7.89952 -7.41181 -6.34314 -4.42724 2.30847 2.84979 3.14287 3.15934 3.22949 3.27424 3.60186 3.64134 3.83869 4.23646 4.49224 4.60262 4.70545 4.87301 4.99107 5.11986 5.33572 5.37652 5.38463 5.50245 5.61808 5.66302 5.67147 5.75866 5.85171 6.04948 6.11026 6.17071 6.17691 6.24182 6.30718 6.46755 6.69449 6.84302 7.04881 7.53930 7.59165 7.66190 7.79364 7.94261 8.35534 8.62762 8.72058 9.24908 10.72802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.005488 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.517661 B = 5100.606650 C = 6936.117968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.302 3.698 5 N -0.642 5.642 6 C 0.521 3.479 7 O -0.515 6.515 8 C -0.105 4.105 9 C -0.135 4.135 10 H 0.119 0.881 11 C -0.174 4.174 12 C -0.154 4.154 13 H 0.103 0.897 14 C -0.126 4.126 15 N -0.345 5.345 16 C 0.257 3.743 17 C -0.540 4.540 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.906 3.094 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.272 1.272 25 N -0.287 5.287 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.161 0.839 30 H 0.416 0.584 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 15.322 -2.290 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.079 3.921 5 N -0.289 5.289 6 C 0.308 3.692 7 O -0.389 6.389 8 C -0.145 4.145 9 C -0.153 4.153 10 H 0.137 0.863 11 C -0.211 4.211 12 C -0.172 4.172 13 H 0.122 0.878 14 C -0.183 4.183 15 N -0.131 5.131 16 C 0.139 3.861 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.112 5.112 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.252 0.748 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.191 14.232 -2.339 14.424 hybrid contribution 1.031 0.203 1.007 1.455 sum 0.839 14.434 -1.332 14.520 Atomic orbital electron populations 1.20015 0.87631 1.02291 1.02123 1.22028 0.96492 0.91083 1.01871 1.21264 0.89099 1.00407 1.22071 1.17970 0.88162 0.83342 1.02593 1.42860 1.08184 1.05745 1.72105 1.20584 0.91646 0.81170 0.75832 1.90613 1.27006 1.73662 1.47612 1.21160 0.95580 0.92839 1.04914 1.22125 0.99958 0.89921 1.03310 0.86261 1.23194 1.03396 1.03108 0.91435 1.22414 0.93608 1.00234 1.00988 0.87841 1.21384 0.93758 1.01056 1.02088 1.49342 1.06501 1.02227 1.55017 1.19611 0.77861 0.89775 0.98878 1.21347 1.13216 1.31916 0.91358 0.91731 1.24934 0.95683 0.94870 0.98182 1.69920 1.19207 1.32535 1.31135 0.86356 0.77616 0.79098 0.83646 1.20183 1.20840 1.19707 1.77343 0.86172 1.21838 1.25868 0.91343 0.91176 0.91578 0.82176 0.74752 0.88058 0.88281 0.88722 0.88811 0.92318 0.92005 0.92268 0.92580 0.93819 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.03 7.21 -82.45 -0.59 0.43 16 3 C -0.30 -6.20 9.58 -39.78 -0.38 -6.59 16 4 C 0.30 6.47 7.66 -153.16 -1.17 5.29 16 5 N -0.64 -11.24 5.42 -11.46 -0.06 -11.30 16 6 C 0.52 8.12 7.79 -10.98 -0.09 8.03 16 7 O -0.51 -9.38 12.69 5.55 0.07 -9.31 16 8 C -0.10 -1.16 5.06 -27.88 -0.14 -1.30 16 9 C -0.13 -1.44 5.42 -90.58 -0.49 -1.93 16 10 H 0.12 1.46 7.30 -51.93 -0.38 1.08 16 11 C -0.17 -1.67 9.83 -26.69 -0.26 -1.93 16 12 C -0.15 -1.34 6.40 -90.62 -0.58 -1.92 16 13 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.13 -0.96 9.19 37.16 0.34 -0.62 16 15 N -0.35 -8.20 3.60 -61.57 -0.22 -8.43 16 16 C 0.26 6.44 6.01 -5.19 -0.03 6.41 16 17 C -0.54 -14.54 9.39 -34.44 -0.32 -14.87 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 21 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 N -0.29 -6.80 12.56 33.65 0.42 -6.37 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.16 3.26 5.83 -52.49 -0.31 2.96 16 30 H 0.42 6.66 7.96 -40.82 -0.33 6.34 16 31 H 0.10 0.93 7.77 -51.93 -0.40 0.52 16 32 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 33 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 36 H 0.06 0.45 7.84 -51.93 -0.41 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.04 1.05 7.50 -51.93 -0.39 0.67 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -31.22 338.91 -8.36 -39.58 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.95 Total: 6.51 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.44 Total: -7.87 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.88 Total: -49.64 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.22 -8.36 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.760 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds