Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39757 * 125.83710 * 2 1 4 4 C 1.36104 * 107.82884 * 180.14225 * 3 2 1 5 5 N 1.39468 * 126.22230 * 179.84532 * 4 3 2 6 6 C 1.34780 * 119.99521 * 359.69120 * 5 4 3 7 7 O 1.21289 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99952 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47357 * 179.97438 * 8 6 5 10 10 H 1.08998 * 115.55561 * 330.68897 * 9 8 6 11 11 C 1.53079 * 117.51408 * 116.38795 * 9 8 6 12 12 C 1.52993 * 117.50041 * 184.99743 * 9 8 6 13 13 H 1.08998 * 117.50110 * 144.99737 * 12 9 8 14 14 C 1.53006 * 117.50097 * 0.02562 * 12 9 8 15 15 N 1.35264 * 107.56647 * 359.58196 * 4 3 2 16 16 C 1.46500 * 126.04987 * 180.22434 * 15 4 3 17 17 C 1.50703 * 109.46756 * 90.00268 * 16 15 4 18 18 H 1.08000 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00053 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99968 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47421 * 89.99586 * 21 19 17 23 23 H 1.48502 * 109.47007 * 209.99588 * 21 19 17 24 24 H 1.48504 * 109.47119 * 329.99451 * 21 19 17 25 25 N 1.30842 * 125.83597 * 179.66828 * 2 1 3 26 26 H 1.08998 * 109.47717 * 270.30137 * 1 2 3 27 27 H 1.09004 * 109.46808 * 30.30165 * 1 2 3 28 28 H 1.09001 * 109.46974 * 150.30002 * 1 2 3 29 29 H 1.08002 * 126.08547 * 359.97438 * 3 2 1 30 30 H 0.96995 * 120.00662 * 179.68975 * 5 4 3 31 31 H 1.09005 * 109.47493 * 59.99612 * 8 6 5 32 32 H 1.09001 * 109.46952 * 299.99818 * 8 6 5 33 33 H 1.09002 * 117.50988 * 359.97438 * 11 9 8 34 34 H 1.08998 * 117.51393 * 214.95588 * 11 9 8 35 35 H 1.08998 * 109.47045 * 300.08696 * 14 12 9 36 36 H 1.09000 * 109.47000 * 60.08646 * 14 12 9 37 37 H 1.08997 * 109.46958 * 180.08764 * 14 12 9 38 38 H 1.08996 * 109.47440 * 210.00283 * 16 15 4 39 39 H 1.08998 * 109.47415 * 330.00589 * 16 15 4 40 40 H 0.97004 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5274 -0.0073 6 6 4.6156 2.8684 -0.0147 7 8 3.5095 3.3661 -0.0183 8 6 5.8383 3.7494 -0.0198 9 6 5.4088 5.2179 -0.0285 10 1 4.4539 5.4256 -0.5112 11 6 5.7893 6.0731 1.1827 12 6 6.5081 6.2746 -0.1528 13 1 6.2766 7.1776 -0.7177 14 6 7.9528 5.7821 -0.2595 15 7 3.6092 -0.6404 0.0042 16 6 4.7870 -1.5116 0.0086 17 6 5.1913 -1.8025 1.4310 18 1 4.6270 -1.3809 2.2497 19 6 6.2815 -2.6068 1.6870 20 7 6.9683 -3.1205 0.6900 21 14 6.7822 -2.9680 3.4501 22 1 6.0828 -4.1896 3.9229 23 1 8.2503 -3.1822 3.5137 24 1 6.4116 -1.8192 4.3151 25 7 2.2730 -1.0607 0.0061 26 1 -0.3634 0.0054 1.0276 27 1 -0.3633 0.8873 -0.5185 28 1 -0.3633 -0.8927 -0.5092 29 1 1.9901 2.1597 -0.0004 30 1 5.6358 1.1295 -0.0049 31 1 6.4334 3.5399 -0.9087 32 1 6.4335 3.5498 0.8713 33 1 6.3452 5.5894 1.9859 34 1 5.0849 6.8435 1.4964 35 1 8.2063 5.2044 0.6293 36 1 8.0580 5.1535 -1.1438 37 1 8.6233 6.6377 -0.3401 38 1 4.5497 -2.4459 -0.5000 39 1 5.6082 -1.0150 -0.5081 40 1 7.7350 -3.6867 0.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562114257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 33.356271 kcal Electronic energy + Delta-G solvation = -21187.929956 eV Core-core repulsion = 18004.050802 eV Total energy + Delta-G solvation = -3183.879154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41932 -40.73012 -38.64544 -36.24809 -35.57656 -33.83786 -31.60348 -30.62352 -29.55852 -28.74820 -27.81355 -24.81884 -23.51539 -22.24318 -21.29539 -20.88635 -20.06758 -18.89319 -18.43586 -17.81926 -16.95417 -16.70200 -16.48900 -15.83152 -15.71768 -15.01835 -14.73061 -14.54395 -14.40525 -14.04717 -13.98531 -13.68747 -13.48929 -13.38970 -13.12409 -12.93148 -12.86056 -12.72539 -12.40949 -12.30394 -12.10203 -11.91145 -11.68644 -11.46339 -10.91332 -10.78737 -10.77145 -10.64410 -9.63782 -9.06222 -8.37235 -6.54775 0.81153 1.35081 1.36105 1.39467 1.49263 1.65497 2.06797 2.20706 2.35318 2.87756 2.93237 3.53497 3.71478 3.83206 3.96952 4.02961 4.23619 4.47922 4.49302 4.60475 4.63392 4.68954 4.74766 4.83334 4.88421 4.90945 4.96157 4.98082 5.03148 5.05386 5.21126 5.24373 5.26894 5.35905 5.50232 5.50732 5.76076 5.96046 6.16896 6.30766 6.56663 6.98504 7.05117 7.17514 8.69309 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.005488 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.517661 B = 5100.606650 C = 6936.117968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.310 4.310 4 C 0.299 3.701 5 N -0.641 5.641 6 C 0.520 3.480 7 O -0.541 6.541 8 C -0.093 4.093 9 C -0.153 4.153 10 H 0.100 0.900 11 C -0.179 4.179 12 C -0.136 4.136 13 H 0.112 0.888 14 C -0.128 4.128 15 N -0.368 5.368 16 C 0.272 3.728 17 C -0.556 4.556 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.267 1.267 24 H -0.271 1.271 25 N -0.333 5.333 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.422 0.578 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 16.627 -1.631 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.342 4.342 4 C 0.076 3.924 5 N -0.290 5.290 6 C 0.309 3.691 7 O -0.417 6.417 8 C -0.133 4.133 9 C -0.172 4.172 10 H 0.118 0.882 11 C -0.215 4.215 12 C -0.154 4.154 13 H 0.130 0.870 14 C -0.185 4.185 15 N -0.153 5.153 16 C 0.153 3.847 17 C -0.594 4.594 18 H 0.064 0.936 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.793 3.207 22 H -0.203 1.203 23 H -0.192 1.192 24 H -0.196 1.196 25 N -0.158 5.158 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.184 0.816 30 H 0.259 0.741 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.688 15.559 -1.691 15.665 hybrid contribution 0.699 -0.121 0.761 1.040 sum 1.387 15.438 -0.930 15.528 Atomic orbital electron populations 1.20222 0.83932 1.04038 1.03690 1.22888 0.98740 0.90080 0.99016 1.21473 0.89157 1.00757 1.22796 1.18394 0.89793 0.82872 1.01310 1.43104 1.07438 1.06155 1.72258 1.21523 0.92830 0.80516 0.74207 1.90588 1.28617 1.73850 1.48621 1.21223 0.93458 0.91802 1.06782 1.22044 1.00237 0.90141 1.04729 0.88211 1.23285 1.03671 1.02862 0.91727 1.22496 0.93594 0.99373 0.99947 0.87007 1.21440 0.92985 1.01681 1.02403 1.49169 1.06290 1.02917 1.56946 1.19230 0.78641 0.88987 0.97826 1.21397 1.13680 1.32769 0.91579 0.93572 1.25669 0.95327 0.94238 1.02060 1.69990 1.19511 1.32655 1.32967 0.85393 0.77925 0.78590 0.78796 1.20264 1.19203 1.19605 1.77291 0.86497 1.23648 1.28373 0.89712 0.88630 0.90619 0.81590 0.74051 0.85723 0.86555 0.88241 0.88675 0.92161 0.91504 0.91149 0.95563 0.93268 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.38 7.21 43.07 0.31 2.69 16 3 C -0.31 -13.01 9.58 22.14 0.21 -12.79 16 4 C 0.30 12.99 7.66 131.32 1.01 13.99 16 5 N -0.64 -22.43 5.42 -308.56 -1.67 -24.10 16 6 C 0.52 15.90 7.79 87.66 0.68 16.58 16 7 O -0.54 -19.65 12.69 -3.06 -0.04 -19.69 16 8 C -0.09 -1.89 5.06 29.85 0.15 -1.74 16 9 C -0.15 -3.06 5.42 -10.77 -0.06 -3.12 16 10 H 0.10 2.42 7.30 -2.39 -0.02 2.40 16 11 C -0.18 -3.11 9.83 30.62 0.30 -2.81 16 12 C -0.14 -2.06 6.40 -10.79 -0.07 -2.13 16 13 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.13 -1.59 9.19 71.98 0.66 -0.93 16 15 N -0.37 -17.96 3.60 -348.72 -1.26 -19.21 16 16 C 0.27 14.11 6.01 85.63 0.51 14.62 16 17 C -0.56 -30.52 9.39 25.60 0.24 -30.28 16 18 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 19 C 0.03 1.53 5.46 84.65 0.46 1.99 16 20 N -0.91 -49.80 13.29 21.45 0.28 -49.51 16 21 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 N -0.33 -16.13 12.56 -47.45 -0.60 -16.72 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.17 6.74 5.83 -2.91 -0.02 6.72 16 30 H 0.42 13.45 7.96 -92.71 -0.74 12.71 16 31 H 0.12 1.97 7.77 -2.38 -0.02 1.95 16 32 H 0.12 2.01 7.88 -2.39 -0.02 1.99 16 33 H 0.10 1.63 7.95 -2.39 -0.02 1.61 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 0.74 7.90 -2.39 -0.02 0.72 16 36 H 0.07 0.78 7.84 -2.39 -0.02 0.76 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 2.44 7.50 -2.39 -0.02 2.43 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -67.91 338.91 4.21 -63.69 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.31 Total: 26.46 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.16 Total: -4.91 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.24 Total: -109.54 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -67.91 4.21 -63.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562114257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.051 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds