Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36025 * 117.00053 * 2 1 4 4 C 1.36064 * 121.00775 * 270.02430 * 3 2 1 5 5 C 1.50704 * 119.87028 * 359.95765 * 4 3 2 6 6 N 1.33834 * 120.26179 * 179.97438 * 4 3 2 7 7 C 1.30078 * 122.71209 * 359.97438 * 6 4 3 8 8 C 1.50701 * 118.93888 * 179.97438 * 7 6 4 9 9 C 1.53005 * 117.49750 * 163.74655 * 8 7 6 10 10 C 1.52997 * 117.49750 * 95.08899 * 8 7 6 11 11 N 1.35836 * 122.12540 * 0.02562 * 7 6 4 12 12 H 0.96998 * 120.34887 * 180.27462 * 11 7 6 13 13 C 1.38037 * 119.30603 * 0.02562 * 11 7 6 14 14 N 1.31485 * 121.18996 * 179.97438 * 13 11 7 15 15 C 1.46501 * 120.00578 * 353.99028 * 14 13 11 16 16 C 1.52996 * 109.47157 * 114.47328 * 15 14 13 17 17 C 1.50709 * 109.46835 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99590 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00831 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99519 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47517 * 90.00082 * 21 19 17 23 23 H 1.48501 * 109.46814 * 210.00168 * 21 19 17 24 24 H 1.48499 * 109.47025 * 329.99836 * 21 19 17 25 25 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46681 * 300.00176 * 1 2 3 27 27 H 1.08998 * 109.46764 * 59.99644 * 1 2 3 28 28 H 1.08989 * 109.47305 * 90.00423 * 5 4 3 29 29 H 1.09007 * 109.46986 * 210.00537 * 5 4 3 30 30 H 1.08995 * 109.47069 * 329.99546 * 5 4 3 31 31 H 1.09001 * 115.55022 * 309.41680 * 8 7 6 32 32 H 1.08997 * 117.49904 * 359.97438 * 9 8 7 33 33 H 1.09002 * 117.49317 * 145.02633 * 9 8 7 34 34 H 1.09007 * 117.49715 * 214.97912 * 10 8 7 35 35 H 1.08995 * 117.50147 * 359.97417 * 10 8 7 36 36 H 1.08997 * 109.46931 * 234.47152 * 15 14 13 37 37 H 1.09005 * 109.46927 * 354.47398 * 15 14 13 38 38 H 1.08997 * 109.47056 * 299.99748 * 16 15 14 39 39 H 1.08995 * 109.47184 * 60.00273 * 16 15 14 40 40 H 0.96995 * 120.00662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 2.3644 1.8368 -1.1662 5 6 2.0318 1.1831 -2.4827 6 7 2.9715 3.0294 -1.1488 7 6 3.2837 3.6432 -0.0452 8 6 3.9670 4.9840 -0.1248 9 6 3.9795 5.8467 1.1388 10 6 3.0856 6.2320 -0.0426 11 7 3.0146 3.1142 1.1766 12 1 3.2553 3.5962 1.9832 13 6 2.3905 1.8857 1.2584 14 7 2.1130 1.3390 2.4216 15 6 2.5825 1.9692 3.6579 16 6 1.3808 2.4531 4.4720 17 6 1.8640 3.1020 5.7435 18 1 2.9222 3.1627 5.9505 19 6 0.9549 3.6180 6.6425 20 7 -0.3337 3.5446 6.3904 21 14 1.5538 4.4229 8.2183 22 1 1.7687 5.8733 7.9827 23 1 0.5369 4.2400 9.2849 24 1 2.8318 3.7952 8.6400 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.0358 1.4915 -2.8001 29 1 2.7622 1.4854 -3.2333 30 1 2.0572 0.0996 -2.3670 31 1 4.8423 5.0279 -0.7728 32 1 3.4931 5.4445 2.0275 33 1 4.8629 6.4583 1.3218 34 1 3.3814 7.0970 -0.6363 35 1 2.0116 6.0832 0.0686 36 1 3.1493 1.2446 4.2425 37 1 3.2212 2.8180 3.4132 38 1 0.8140 3.1777 3.8874 39 1 0.7423 1.6044 4.7166 40 1 -0.9732 3.9073 7.0230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570225910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = 42.698215 kcal Electronic energy + Delta-G solvation = -21512.493743 eV Core-core repulsion = 18329.019686 eV Total energy + Delta-G solvation = -3183.474057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98177 -38.36022 -36.89002 -36.14884 -33.68923 -32.60131 -30.95556 -29.62526 -27.95304 -26.50924 -24.93707 -24.31203 -22.75777 -21.82339 -20.88439 -20.14195 -18.77741 -17.84020 -16.97090 -16.37812 -15.77901 -15.61800 -14.92050 -14.62956 -14.52523 -14.22095 -13.98605 -13.52460 -13.16609 -12.81297 -12.48671 -12.19251 -12.17080 -11.81096 -11.77651 -11.62147 -11.24200 -11.03071 -10.80020 -10.74193 -10.59720 -10.49487 -10.20033 -9.92876 -9.44075 -9.36098 -9.26921 -8.78728 -8.42123 -7.10763 -6.07026 -4.11840 0.81478 2.15009 2.83537 3.25821 3.32750 3.35116 3.36401 3.51785 3.88926 4.07188 4.35112 4.45357 4.52759 4.64885 4.77307 4.94376 5.28175 5.40027 5.41058 5.50560 5.52817 5.56501 5.58081 5.60914 5.71767 5.76410 5.83679 5.90196 5.91630 6.04440 6.19449 6.45224 6.63068 6.86026 7.11170 7.56446 7.60129 7.71353 7.91758 8.11670 8.28992 8.51701 8.95139 9.52768 11.03868 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.005107 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.659359 B = 5481.601812 C = 6818.450693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.304 6.304 3 C 0.018 3.982 4 C 0.118 3.882 5 C -0.094 4.094 6 N -0.541 5.541 7 C 0.430 3.570 8 C -0.116 4.116 9 C -0.176 4.176 10 C -0.147 4.147 11 N -0.652 5.652 12 H 0.418 0.582 13 C 0.351 3.649 14 N -0.544 5.544 15 C 0.053 3.947 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.027 0.973 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 2.229 -17.419 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C -0.035 4.035 4 C 0.001 3.999 5 C -0.151 4.151 6 N -0.267 5.267 7 C 0.163 3.837 8 C -0.137 4.137 9 C -0.214 4.214 10 C -0.185 4.185 11 N -0.286 5.286 12 H 0.261 0.739 13 C 0.079 3.921 14 N -0.267 5.267 15 C -0.076 4.076 16 C -0.005 4.005 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.898 1.387 -17.664 18.674 hybrid contribution 0.333 1.181 2.200 2.519 sum 6.231 2.568 -15.463 16.868 Atomic orbital electron populations 1.23001 0.79575 1.02881 1.00600 1.86049 1.19497 1.22783 1.93362 1.19355 1.05972 0.89906 0.88237 1.20931 0.94774 0.89157 0.95012 1.20564 1.02052 1.00329 0.92193 1.67486 1.22774 1.10982 1.25419 1.21850 0.88476 0.92558 0.80830 1.20948 1.02492 0.86039 1.04185 1.23199 1.03363 1.02480 0.92354 1.23031 0.98216 0.96344 1.00944 1.44386 1.54784 1.19925 1.09507 0.73929 1.21842 0.92304 0.82935 0.94975 1.73261 1.24300 1.32227 0.96916 1.22278 0.99484 0.95956 0.89852 1.19073 0.91724 0.96229 0.93447 1.21167 0.92995 1.38115 1.04245 0.92609 1.25011 0.94819 0.96051 0.98314 1.69974 1.00807 1.45764 1.36474 0.86565 0.78624 0.79608 0.83045 1.20624 1.21080 1.19774 0.89026 0.92912 0.94274 0.90761 0.90465 0.90120 0.84103 0.88101 0.86893 0.87200 0.88152 0.90608 0.96665 0.97170 0.95493 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.13 101.05 1.13 1.60 16 2 O -0.30 -5.11 9.41 -19.82 -0.19 -5.30 16 3 C 0.02 0.31 5.93 -36.89 -0.22 0.09 16 4 C 0.12 1.75 6.78 -82.50 -0.56 1.19 16 5 C -0.09 -1.04 9.96 36.01 0.36 -0.69 16 6 N -0.54 -7.88 10.12 -6.72 -0.07 -7.95 16 7 C 0.43 5.98 7.37 -155.04 -1.14 4.83 16 8 C -0.12 -1.17 6.22 -91.77 -0.57 -1.74 16 9 C -0.18 -1.64 9.87 -26.69 -0.26 -1.91 16 10 C -0.15 -1.32 10.24 -26.70 -0.27 -1.59 16 11 N -0.65 -10.53 5.21 -8.00 -0.04 -10.57 16 12 H 0.42 6.56 4.35 -40.82 -0.18 6.39 16 13 C 0.35 6.74 7.68 -153.59 -1.18 5.56 16 14 N -0.54 -11.99 10.51 -58.55 -0.62 -12.61 16 15 C 0.05 1.22 6.23 -4.04 -0.03 1.19 16 16 C 0.03 0.90 5.30 -27.88 -0.15 0.75 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.73 8.14 -51.94 -0.42 0.30 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.86 7.52 -51.93 -0.39 0.47 16 31 H 0.14 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.12 6.58 -51.93 -0.34 0.78 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.02 0.31 5.62 -51.93 -0.29 0.02 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -33.69 338.50 -9.22 -42.91 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.82 Total: 2.61 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.31 Total: -4.36 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.01 Total: -57.41 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.19 Total: -5.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.69 -9.22 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570225910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.605 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds