Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36025 * 117.00053 * 2 1 4 4 C 1.36064 * 121.00775 * 270.02430 * 3 2 1 5 5 C 1.50704 * 119.87028 * 359.95765 * 4 3 2 6 6 N 1.33834 * 120.26179 * 179.97438 * 4 3 2 7 7 C 1.30078 * 122.71209 * 359.97438 * 6 4 3 8 8 C 1.50701 * 118.93888 * 179.97438 * 7 6 4 9 9 C 1.53005 * 117.49750 * 163.74655 * 8 7 6 10 10 C 1.52997 * 117.49750 * 95.08899 * 8 7 6 11 11 N 1.35836 * 122.12540 * 0.02562 * 7 6 4 12 12 H 0.96998 * 120.34887 * 180.27462 * 11 7 6 13 13 C 1.38037 * 119.30603 * 0.02562 * 11 7 6 14 14 N 1.31485 * 121.18996 * 179.97438 * 13 11 7 15 15 C 1.46501 * 120.00578 * 353.99028 * 14 13 11 16 16 C 1.52996 * 109.47157 * 114.47328 * 15 14 13 17 17 C 1.50709 * 109.46835 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99590 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00831 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99519 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47517 * 90.00082 * 21 19 17 23 23 H 1.48501 * 109.46814 * 210.00168 * 21 19 17 24 24 H 1.48499 * 109.47025 * 329.99836 * 21 19 17 25 25 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46681 * 300.00176 * 1 2 3 27 27 H 1.08998 * 109.46764 * 59.99644 * 1 2 3 28 28 H 1.08989 * 109.47305 * 90.00423 * 5 4 3 29 29 H 1.09007 * 109.46986 * 210.00537 * 5 4 3 30 30 H 1.08995 * 109.47069 * 329.99546 * 5 4 3 31 31 H 1.09001 * 115.55022 * 309.41680 * 8 7 6 32 32 H 1.08997 * 117.49904 * 359.97438 * 9 8 7 33 33 H 1.09002 * 117.49317 * 145.02633 * 9 8 7 34 34 H 1.09007 * 117.49715 * 214.97912 * 10 8 7 35 35 H 1.08995 * 117.50147 * 359.97417 * 10 8 7 36 36 H 1.08997 * 109.46931 * 234.47152 * 15 14 13 37 37 H 1.09005 * 109.46927 * 354.47398 * 15 14 13 38 38 H 1.08997 * 109.47056 * 299.99748 * 16 15 14 39 39 H 1.08995 * 109.47184 * 60.00273 * 16 15 14 40 40 H 0.96995 * 120.00662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 2.3644 1.8368 -1.1662 5 6 2.0318 1.1831 -2.4827 6 7 2.9715 3.0294 -1.1488 7 6 3.2837 3.6432 -0.0452 8 6 3.9670 4.9840 -0.1248 9 6 3.9795 5.8467 1.1388 10 6 3.0856 6.2320 -0.0426 11 7 3.0146 3.1142 1.1766 12 1 3.2553 3.5962 1.9832 13 6 2.3905 1.8857 1.2584 14 7 2.1130 1.3390 2.4216 15 6 2.5825 1.9692 3.6579 16 6 1.3808 2.4531 4.4720 17 6 1.8640 3.1020 5.7435 18 1 2.9222 3.1627 5.9505 19 6 0.9549 3.6180 6.6425 20 7 -0.3337 3.5446 6.3904 21 14 1.5538 4.4229 8.2183 22 1 1.7687 5.8733 7.9827 23 1 0.5369 4.2400 9.2849 24 1 2.8318 3.7952 8.6400 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.0358 1.4915 -2.8001 29 1 2.7622 1.4854 -3.2333 30 1 2.0572 0.0996 -2.3670 31 1 4.8423 5.0279 -0.7728 32 1 3.4931 5.4445 2.0275 33 1 4.8629 6.4583 1.3218 34 1 3.3814 7.0970 -0.6363 35 1 2.0116 6.0832 0.0686 36 1 3.1493 1.2446 4.2425 37 1 3.2212 2.8180 3.4132 38 1 0.8140 3.1777 3.8874 39 1 0.7423 1.6044 4.7166 40 1 -0.9732 3.9073 7.0230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570225910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = 20.642308 kcal Electronic energy + Delta-G solvation = -21513.450158 eV Core-core repulsion = 18329.019686 eV Total energy + Delta-G solvation = -3184.430473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23754 -39.48458 -38.01594 -37.48226 -35.56816 -34.21571 -32.47082 -31.13493 -29.31474 -27.77384 -26.54479 -25.62961 -23.79672 -23.27028 -21.94229 -21.74457 -20.06345 -19.20981 -18.60676 -17.97564 -16.95737 -16.71993 -16.57660 -16.19103 -15.85730 -15.47733 -15.25802 -15.03520 -14.46322 -14.16716 -13.93231 -13.67501 -13.27871 -13.06693 -13.06080 -12.81372 -12.74174 -12.51264 -12.39381 -12.25924 -11.77869 -11.63911 -11.55509 -11.51732 -11.47748 -10.85258 -10.68096 -10.61055 -10.36716 -8.55012 -8.26714 -6.43160 -0.39777 0.76209 1.36431 1.39249 1.50811 1.55591 2.21257 2.35042 2.52713 2.76902 2.99283 3.04708 3.15486 3.60962 3.77805 3.90205 3.99523 4.10221 4.26914 4.34191 4.45806 4.52917 4.54067 4.59949 4.70414 4.75958 4.79022 4.79638 4.89674 4.91726 5.01568 5.13741 5.24389 5.28939 5.34249 5.46177 5.67148 5.81223 6.08432 6.36937 6.71688 6.87741 7.00174 7.27979 8.84362 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.005107 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.659359 B = 5481.601812 C = 6818.450693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C -0.027 4.027 4 C 0.141 3.859 5 C -0.093 4.093 6 N -0.543 5.543 7 C 0.430 3.570 8 C -0.121 4.121 9 C -0.177 4.177 10 C -0.138 4.138 11 N -0.651 5.651 12 H 0.418 0.582 13 C 0.358 3.642 14 N -0.599 5.599 15 C 0.071 3.929 16 C 0.046 3.954 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.975 3.025 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.116 0.884 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.033 0.967 38 H -0.021 1.021 39 H -0.016 1.016 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 3.988 -19.007 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.228 6.228 3 C -0.079 4.079 4 C 0.023 3.977 5 C -0.150 4.150 6 N -0.268 5.268 7 C 0.164 3.836 8 C -0.141 4.141 9 C -0.214 4.214 10 C -0.176 4.176 11 N -0.284 5.284 12 H 0.261 0.739 13 C 0.088 3.912 14 N -0.326 5.326 15 C -0.058 4.058 16 C 0.009 3.991 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.573 5.573 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.134 0.866 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.051 0.949 38 H -0.002 1.002 39 H 0.003 0.997 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.725 3.173 -19.285 21.015 hybrid contribution -0.251 0.700 2.482 2.591 sum 7.475 3.873 -16.803 18.794 Atomic orbital electron populations 1.23135 0.78656 1.04353 1.00052 1.86037 1.20619 1.22850 1.93262 1.19512 1.09128 0.91259 0.88042 1.21576 0.91750 0.88537 0.95845 1.20716 1.03547 1.00440 0.90248 1.67679 1.22949 1.10888 1.25274 1.22778 0.87318 0.93749 0.79742 1.21191 1.03389 0.84033 1.05458 1.23277 1.04402 1.02429 0.91296 1.23152 0.97091 0.96504 1.00853 1.44522 1.54056 1.19119 1.10679 0.73908 1.22376 0.90396 0.83271 0.95160 1.73253 1.28183 1.33938 0.97190 1.21856 0.97398 0.96230 0.90329 1.18843 0.92666 0.93738 0.93898 1.21557 0.93739 1.38391 1.04840 0.91441 1.26074 0.94763 0.96417 1.02389 1.70133 1.02405 1.46715 1.38083 0.85311 0.78329 0.78930 0.77653 1.19060 1.20768 1.18490 0.86614 0.96341 0.91811 0.88793 0.88663 0.89484 0.81239 0.90574 0.84092 0.83987 0.90000 0.91465 0.94893 1.00249 0.99719 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.13 113.37 1.26 2.17 16 2 O -0.31 -10.71 9.41 -93.84 -0.88 -11.59 16 3 C -0.03 -0.93 5.93 24.01 0.14 -0.79 16 4 C 0.14 3.98 6.78 41.75 0.28 4.27 16 5 C -0.09 -1.79 9.96 71.24 0.71 -1.08 16 6 N -0.54 -14.74 10.12 -175.19 -1.77 -16.51 16 7 C 0.43 11.39 7.37 138.00 1.02 12.40 16 8 C -0.12 -2.10 6.22 -11.54 -0.07 -2.18 16 9 C -0.18 -2.91 9.87 30.62 0.30 -2.61 16 10 C -0.14 -2.11 10.24 30.62 0.31 -1.80 16 11 N -0.65 -21.27 5.21 -179.24 -0.93 -22.20 16 12 H 0.42 13.45 4.35 -92.71 -0.40 13.04 16 13 C 0.36 14.23 7.68 135.69 1.04 15.27 16 14 N -0.60 -28.06 10.51 -339.14 -3.56 -31.63 16 15 C 0.07 3.44 6.23 86.38 0.54 3.98 16 16 C 0.05 2.68 5.30 29.85 0.16 2.84 16 17 C -0.55 -32.04 9.11 25.60 0.23 -31.80 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 19 C 0.00 0.10 5.46 84.65 0.46 0.57 16 20 N -0.93 -58.48 13.29 21.44 0.28 -58.20 16 21 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.09 1.63 7.52 -2.39 -0.02 1.61 16 31 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.67 6.58 -2.39 -0.02 1.65 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.03 1.42 5.62 -2.38 -0.01 1.40 16 38 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -76.93 338.50 2.19 -74.74 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.64 Total: 17.87 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 6.39 Total: 1.24 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.99 Total: -128.54 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.88 Total: -11.59 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -76.93 2.19 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570225910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.381 kcal (2) G-P(sol) polarization free energy of solvation -76.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds