Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30263 * 125.61654 * 2 1 4 4 C 1.34475 * 108.69775 * 180.19417 * 3 2 1 5 5 C 1.50700 * 126.16388 * 179.83030 * 4 3 2 6 6 C 1.53004 * 109.46798 * 269.68464 * 5 4 3 7 7 N 1.46900 * 109.47074 * 180.02562 * 6 5 4 8 8 C 1.46904 * 110.99779 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46858 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47753 * 305.00128 * 9 8 7 11 11 C 1.47204 * 109.47042 * 64.99895 * 9 8 7 12 12 N 9.07506 * 159.24999 * 327.47790 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99851 * 9 8 7 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.34335 * 107.67115 * 359.55886 * 4 3 2 23 23 C 1.50697 * 126.44468 * 180.24328 * 22 4 3 24 24 O 1.33966 * 125.62242 * 179.71134 * 2 1 3 25 25 H 1.09002 * 109.47148 * 180.31290 * 1 2 3 26 26 H 1.09000 * 109.46772 * 300.31097 * 1 2 3 27 27 H 1.08997 * 109.47222 * 60.31332 * 1 2 3 28 28 H 1.08998 * 109.47072 * 149.69005 * 5 4 3 29 29 H 1.08998 * 109.47245 * 29.68159 * 5 4 3 30 30 H 1.09003 * 109.47140 * 60.00064 * 6 5 4 31 31 H 1.09004 * 109.47248 * 300.00216 * 6 5 4 32 32 H 1.00899 * 110.99585 * 303.95295 * 7 6 5 33 33 H 1.08997 * 109.46933 * 59.99775 * 8 7 6 34 34 H 1.08996 * 109.47325 * 299.99917 * 8 7 6 35 35 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 36 36 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08992 * 109.47333 * 90.00265 * 23 22 4 39 39 H 1.08996 * 109.47064 * 210.00640 * 23 22 4 40 40 H 1.08999 * 109.47203 * 330.00432 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0590 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 4.7570 1.5728 -0.0095 6 6 5.1642 1.8715 -1.4537 7 7 6.3390 2.7534 -1.4588 8 6 6.7591 3.0628 -2.8321 9 6 7.9819 3.9817 -2.7966 10 1 7.7545 4.8664 -2.2019 11 6 9.1174 3.2642 -2.1943 12 7 9.9934 2.7110 -1.7286 13 6 8.3437 4.4044 -4.2217 14 6 9.4698 5.4050 -4.1783 15 1 9.8860 5.7088 -3.2291 16 6 9.9729 5.9281 -5.3507 17 7 9.4663 5.5579 -6.5065 18 14 11.3737 7.1626 -5.2972 19 1 11.7617 7.4102 -3.8854 20 1 12.5387 6.6219 -6.0427 21 1 10.9349 8.4367 -5.9212 22 6 3.5698 -0.6756 0.0028 23 6 4.7937 -1.5548 0.0066 24 8 2.2873 -1.0890 0.0055 25 1 -0.3633 -1.0277 0.0056 26 1 -0.3633 0.5187 0.8872 27 1 -0.3633 0.5089 -0.8927 28 1 5.5822 1.0822 0.5066 29 1 4.5130 2.5053 0.4995 30 1 4.3389 2.3621 -1.9699 31 1 5.4081 0.9390 -1.9628 32 1 6.1593 3.5981 -0.9370 33 1 5.9449 3.5622 -3.3572 34 1 7.0135 2.1388 -3.3512 35 1 7.4740 4.8566 -4.6985 36 1 8.6568 3.5297 -4.7918 37 1 9.8200 5.9262 -7.3313 38 1 5.0896 -1.7613 1.0351 39 1 4.5693 -2.4922 -0.5021 40 1 5.6077 -1.0467 -0.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576458405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = 22.545549 kcal Electronic energy + Delta-G solvation = -20167.332915 eV Core-core repulsion = 16982.984973 eV Total energy + Delta-G solvation = -3184.347942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.55431 -37.56096 -36.04294 -34.88841 -33.94869 -33.36048 -31.80348 -30.41633 -29.65995 -26.56411 -25.10872 -23.25290 -22.28845 -21.86468 -21.61648 -20.54445 -17.19465 -17.03986 -16.68787 -16.38437 -15.45526 -15.00060 -14.63944 -14.50854 -14.24533 -14.01528 -13.77353 -13.40024 -13.06325 -13.00656 -12.97118 -12.61158 -12.52250 -12.36247 -12.11455 -11.93599 -11.71193 -11.33977 -11.12305 -11.00901 -10.99679 -10.68628 -10.63245 -10.49567 -10.23161 -9.54623 -9.21210 -8.69379 -8.46210 -8.31967 -6.09470 -4.12453 1.21218 2.41672 2.44180 3.28814 3.37046 3.41808 3.70797 3.76360 3.84619 4.21711 4.42196 4.50719 4.77643 4.79936 4.91428 4.94774 5.01528 5.10491 5.17132 5.19987 5.28803 5.31626 5.38692 5.53339 5.58490 5.70960 5.73917 5.82903 5.94674 6.01162 6.04454 6.18155 6.39309 6.50370 7.07163 7.42837 7.47956 7.53865 7.55653 7.86147 8.23482 8.59587 8.92679 9.53073 11.01516 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.002677 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.905980 B =10457.250239 C =10868.756213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.181 3.819 3 N -0.476 5.476 4 C -0.006 4.006 5 C -0.037 4.037 6 C 0.067 3.933 7 N -0.694 5.694 8 C 0.067 3.933 9 C 0.009 3.991 10 H 0.100 0.900 11 C 0.256 3.744 12 N -0.480 5.480 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.047 4.047 23 C -0.070 4.070 24 O -0.204 6.204 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -11.918 12.175 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.026 4.026 3 N -0.206 5.206 4 C -0.126 4.126 5 C -0.075 4.075 6 C -0.063 4.063 7 N -0.325 5.325 8 C -0.063 4.063 9 C -0.013 4.013 10 H 0.117 0.883 11 C -0.061 4.061 12 N -0.157 5.157 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.100 4.100 23 C -0.126 4.126 24 O -0.092 6.092 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.811 -12.677 12.765 24.622 hybrid contribution -0.037 0.876 -0.605 1.065 sum -16.848 -11.801 12.160 23.896 Atomic orbital electron populations 1.20218 0.81389 1.04530 1.05017 1.26200 0.96371 0.78706 1.01326 1.70327 1.01747 1.30273 1.18278 1.21435 0.93062 0.92006 1.06073 1.19907 0.91444 0.98209 0.97921 1.21833 0.91390 0.97761 0.95274 1.60522 1.35531 1.21122 1.15291 1.22063 0.96002 0.99591 0.88644 1.19217 0.86244 0.95088 1.00722 0.88253 1.28855 0.93494 0.92284 0.91454 1.80974 1.11853 1.11196 1.11651 1.19176 0.97762 0.97138 0.86710 1.21189 1.17743 1.24577 0.92823 0.92416 1.24965 0.96897 0.96724 0.95472 1.69952 1.41973 1.43716 0.97422 0.86532 0.82211 0.81052 0.78263 1.19661 1.20974 1.20860 1.23232 0.83757 0.95163 1.07843 1.20319 0.90145 0.98317 1.03842 1.84369 1.16697 1.37784 1.70338 0.89554 0.88625 0.88544 0.89334 0.90066 0.94745 0.91124 0.83990 0.93202 0.90524 0.94441 0.95550 0.92858 0.89814 0.90395 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.18 1.90 8.34 -12.94 -0.11 1.79 16 3 N -0.48 -6.05 11.29 -7.35 -0.08 -6.13 16 4 C -0.01 -0.07 6.36 -82.81 -0.53 -0.59 16 5 C -0.04 -0.39 5.64 -27.88 -0.16 -0.55 16 6 C 0.07 0.78 5.67 -3.82 -0.02 0.76 16 7 N -0.69 -8.97 6.20 -113.78 -0.71 -9.67 16 8 C 0.07 0.99 5.05 -3.82 -0.02 0.97 16 9 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 10 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 11 C 0.26 5.33 13.67 -20.76 -0.28 5.05 16 12 N -0.48 -10.86 18.54 42.15 0.78 -10.08 16 13 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 14 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.05 -0.51 7.39 -35.69 -0.26 -0.77 16 23 C -0.07 -0.53 10.04 36.00 0.36 -0.17 16 24 O -0.20 -2.29 10.78 5.37 0.06 -2.23 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.89 7.79 -51.93 -0.40 0.48 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.34 4.00 8.73 -39.29 -0.34 3.66 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.72 7.80 -51.93 -0.40 0.31 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -32.88 350.51 -6.51 -39.39 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.18 Total: -2.41 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.38 Total: -5.61 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.73 Total: -50.78 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: 0.06 Total: -2.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.88 -6.51 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576458405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.932 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds