Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30263 * 125.61654 * 2 1 4 4 C 1.34475 * 108.69775 * 180.19417 * 3 2 1 5 5 C 1.50700 * 126.16388 * 179.83030 * 4 3 2 6 6 C 1.53004 * 109.46798 * 269.68464 * 5 4 3 7 7 N 1.46900 * 109.47074 * 180.02562 * 6 5 4 8 8 C 1.46904 * 110.99779 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46858 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47753 * 305.00128 * 9 8 7 11 11 C 1.47204 * 109.47042 * 64.99895 * 9 8 7 12 12 N 9.07506 * 159.24999 * 327.47790 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99851 * 9 8 7 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.34335 * 107.67115 * 359.55886 * 4 3 2 23 23 C 1.50697 * 126.44468 * 180.24328 * 22 4 3 24 24 O 1.33966 * 125.62242 * 179.71134 * 2 1 3 25 25 H 1.09002 * 109.47148 * 180.31290 * 1 2 3 26 26 H 1.09000 * 109.46772 * 300.31097 * 1 2 3 27 27 H 1.08997 * 109.47222 * 60.31332 * 1 2 3 28 28 H 1.08998 * 109.47072 * 149.69005 * 5 4 3 29 29 H 1.08998 * 109.47245 * 29.68159 * 5 4 3 30 30 H 1.09003 * 109.47140 * 60.00064 * 6 5 4 31 31 H 1.09004 * 109.47248 * 300.00216 * 6 5 4 32 32 H 1.00899 * 110.99585 * 303.95295 * 7 6 5 33 33 H 1.08997 * 109.46933 * 59.99775 * 8 7 6 34 34 H 1.08996 * 109.47325 * 299.99917 * 8 7 6 35 35 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 36 36 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08992 * 109.47333 * 90.00265 * 23 22 4 39 39 H 1.08996 * 109.47064 * 210.00640 * 23 22 4 40 40 H 1.08999 * 109.47203 * 330.00432 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0590 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 4.7570 1.5728 -0.0095 6 6 5.1642 1.8715 -1.4537 7 7 6.3390 2.7534 -1.4588 8 6 6.7591 3.0628 -2.8321 9 6 7.9819 3.9817 -2.7966 10 1 7.7545 4.8664 -2.2019 11 6 9.1174 3.2642 -2.1943 12 7 9.9934 2.7110 -1.7286 13 6 8.3437 4.4044 -4.2217 14 6 9.4698 5.4050 -4.1783 15 1 9.8860 5.7088 -3.2291 16 6 9.9729 5.9281 -5.3507 17 7 9.4663 5.5579 -6.5065 18 14 11.3737 7.1626 -5.2972 19 1 11.7617 7.4102 -3.8854 20 1 12.5387 6.6219 -6.0427 21 1 10.9349 8.4367 -5.9212 22 6 3.5698 -0.6756 0.0028 23 6 4.7937 -1.5548 0.0066 24 8 2.2873 -1.0890 0.0055 25 1 -0.3633 -1.0277 0.0056 26 1 -0.3633 0.5187 0.8872 27 1 -0.3633 0.5089 -0.8927 28 1 5.5822 1.0822 0.5066 29 1 4.5130 2.5053 0.4995 30 1 4.3389 2.3621 -1.9699 31 1 5.4081 0.9390 -1.9628 32 1 6.1593 3.5981 -0.9370 33 1 5.9449 3.5622 -3.3572 34 1 7.0135 2.1388 -3.3512 35 1 7.4740 4.8566 -4.6985 36 1 8.6568 3.5297 -4.7918 37 1 9.8200 5.9262 -7.3313 38 1 5.0896 -1.7613 1.0351 39 1 4.5693 -2.4922 -0.5021 40 1 5.6077 -1.0467 -0.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576458405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -0.459345 kcal Electronic energy + Delta-G solvation = -20168.330482 eV Core-core repulsion = 16982.984973 eV Total energy + Delta-G solvation = -3185.345509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.34488 -38.89876 -37.26537 -36.01693 -35.39523 -34.57403 -33.33519 -30.95166 -30.81574 -28.15868 -26.02693 -24.53268 -23.48158 -23.34268 -22.56873 -21.36143 -18.65890 -18.35049 -17.88197 -17.49454 -16.67435 -16.43412 -15.83934 -15.69596 -15.31462 -14.97806 -14.63362 -14.34987 -14.25251 -14.17113 -13.74766 -13.72873 -13.53088 -13.41591 -13.27913 -13.11545 -13.07048 -12.98375 -12.84712 -12.49013 -12.35174 -12.06780 -11.90993 -11.84650 -11.47410 -11.37519 -11.11405 -10.55585 -9.47630 -9.37209 -8.19440 -6.27500 0.43863 1.39507 1.42603 1.53086 1.59872 1.73964 2.09236 2.15718 2.41872 2.97257 3.16104 3.26989 3.38111 3.79173 3.94587 4.08571 4.23540 4.25120 4.30515 4.41567 4.53612 4.62476 4.64704 4.65852 4.70389 4.77919 4.83216 4.92293 4.98136 5.02829 5.04722 5.15331 5.24989 5.41780 5.47612 5.62441 5.79633 5.97104 6.21268 6.49666 6.75879 6.84243 6.95115 7.41201 8.91794 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.002677 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.905980 B =10457.250239 C =10868.756213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.178 3.822 3 N -0.511 5.511 4 C -0.029 4.029 5 C -0.027 4.027 6 C 0.076 3.924 7 N -0.695 5.695 8 C 0.078 3.922 9 C 0.021 3.979 10 H 0.121 0.879 11 C 0.266 3.734 12 N -0.512 5.512 13 C 0.036 3.964 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.053 4.053 23 C -0.068 4.068 24 O -0.213 6.213 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.351 0.649 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.144 -11.996 13.069 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.029 4.029 3 N -0.241 5.241 4 C -0.148 4.148 5 C -0.066 4.066 6 C -0.054 4.054 7 N -0.327 5.327 8 C -0.052 4.052 9 C -0.001 4.001 10 H 0.139 0.861 11 C -0.050 4.050 12 N -0.190 5.190 13 C -0.002 4.002 14 C -0.575 4.575 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.775 3.225 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.106 4.106 23 C -0.125 4.125 24 O -0.101 6.101 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.609 -12.747 13.675 25.682 hybrid contribution 0.154 0.873 -0.871 1.243 sum -17.455 -11.875 12.804 24.690 Atomic orbital electron populations 1.20487 0.78304 1.06239 1.06048 1.27175 0.97927 0.78109 0.99641 1.70314 1.02429 1.31500 1.19892 1.21626 0.93201 0.92718 1.07247 1.19808 0.91433 0.98134 0.97178 1.21750 0.90456 0.97224 0.95925 1.60452 1.36372 1.21815 1.14078 1.21857 0.94732 0.98639 0.89948 1.19157 0.86684 0.96487 0.97782 0.86133 1.29307 0.93342 0.91597 0.90777 1.80975 1.12768 1.12485 1.12761 1.19000 0.96582 0.95321 0.89340 1.21595 1.18432 1.24869 0.92609 0.92649 1.25736 0.99229 0.98595 0.95379 1.70045 1.43403 1.45056 0.97971 0.85626 0.79327 0.79247 0.78263 1.19295 1.21155 1.19843 1.23750 0.84399 0.95396 1.07045 1.20441 0.88859 0.98262 1.04922 1.84388 1.17016 1.38216 1.70518 0.87530 0.87323 0.87544 0.88622 0.90203 0.95338 0.91239 0.82963 0.91868 0.91092 0.94751 0.98072 0.92737 0.88403 0.89303 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.18 3.57 8.34 88.34 0.74 4.31 16 3 N -0.51 -12.70 11.29 -291.97 -3.30 -16.00 16 4 C -0.03 -0.66 6.36 41.26 0.26 -0.40 16 5 C -0.03 -0.56 5.64 29.85 0.17 -0.39 16 6 C 0.08 1.67 5.67 86.30 0.49 2.16 16 7 N -0.70 -16.82 6.20 -513.88 -3.19 -20.01 16 8 C 0.08 2.21 5.05 86.30 0.44 2.65 16 9 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 10 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 11 C 0.27 10.84 13.67 89.44 1.22 12.06 16 12 N -0.51 -22.88 18.54 20.01 0.37 -22.51 16 13 C 0.04 1.68 4.42 29.85 0.13 1.81 16 14 C -0.54 -28.43 8.60 25.60 0.22 -28.21 16 15 H 0.06 2.90 7.59 -2.91 -0.02 2.88 16 16 C 0.01 0.51 5.46 84.66 0.46 0.98 16 17 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 18 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C -0.05 -1.11 7.39 24.79 0.18 -0.92 16 23 C -0.07 -0.95 10.04 71.24 0.72 -0.23 16 24 O -0.21 -4.58 10.78 -3.70 -0.04 -4.62 16 25 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 1.80 7.79 -2.39 -0.02 1.78 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.35 7.50 8.73 -89.69 -0.78 6.72 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.33 7.80 -2.39 -0.02 1.31 16 Total: -1.00 -69.72 350.51 2.16 -67.57 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.26 Total: 8.26 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.75 Total: -5.23 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -5.83 Total: -111.55 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.04 Total: -4.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -69.72 2.16 -67.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576458405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.106 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds