Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30255 * 125.62181 * 2 1 4 4 C 1.34475 * 108.70073 * 180.18508 * 3 2 1 5 5 C 1.50705 * 126.16117 * 179.82191 * 4 3 2 6 6 C 1.52995 * 109.47244 * 269.69277 * 5 4 3 7 7 N 1.46906 * 109.46978 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 H 1.08990 * 109.47170 * 54.99770 * 9 8 7 11 11 C 1.47196 * 109.47160 * 294.99517 * 9 8 7 12 12 N 8.72717 * 131.73522 * 344.44642 * 2 1 3 13 13 C 1.53002 * 109.46776 * 174.99873 * 9 8 7 14 14 C 1.50701 * 109.46807 * 184.99822 * 13 9 8 15 15 H 1.07998 * 120.00496 * 359.97438 * 14 13 9 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 13 9 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46778 * 89.99942 * 18 16 14 20 20 H 1.48494 * 109.46946 * 209.99639 * 18 16 14 21 21 H 1.48502 * 109.47167 * 330.00099 * 18 16 14 22 22 C 1.34331 * 107.67026 * 359.56680 * 4 3 2 23 23 C 1.50694 * 126.44121 * 180.24144 * 22 4 3 24 24 O 1.33965 * 125.62028 * 179.70687 * 2 1 3 25 25 H 1.09001 * 109.46810 * 180.31755 * 1 2 3 26 26 H 1.09000 * 109.46889 * 300.31618 * 1 2 3 27 27 H 1.09001 * 109.46951 * 60.31867 * 1 2 3 28 28 H 1.09005 * 109.46616 * 149.69833 * 5 4 3 29 29 H 1.09002 * 109.47100 * 29.69971 * 5 4 3 30 30 H 1.08995 * 109.46859 * 60.00696 * 6 5 4 31 31 H 1.09002 * 109.47639 * 300.00364 * 6 5 4 32 32 H 1.00898 * 110.99995 * 303.95410 * 7 6 5 33 33 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 34 34 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 35 35 H 1.08993 * 109.47416 * 304.99509 * 13 9 8 36 36 H 1.09001 * 109.46966 * 65.00241 * 13 9 8 37 37 H 0.97010 * 119.99808 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47293 * 89.99843 * 23 22 4 39 39 H 1.09002 * 109.46576 * 209.99929 * 23 22 4 40 40 H 1.09002 * 109.47334 * 329.99061 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 -0.0041 5 6 4.7571 1.5727 -0.0094 6 6 5.1644 1.8713 -1.4536 7 7 6.3393 2.7532 -1.4586 8 6 6.7594 3.0625 -2.8318 9 6 7.9830 3.9804 -2.7962 10 1 8.7664 3.5183 -2.1957 11 6 7.6086 5.2743 -2.2028 12 7 7.3167 6.2740 -1.7462 13 6 8.4959 4.2019 -4.2206 14 6 9.7709 5.0040 -4.1762 15 1 10.1748 5.3242 -3.2272 16 6 10.4213 5.3301 -5.3474 17 7 9.9287 4.9415 -6.5033 18 14 12.0014 6.3250 -5.2926 19 1 13.1627 5.4046 -5.1952 20 1 12.1171 7.1388 -6.5293 21 1 11.9805 7.2224 -4.1095 22 6 3.5698 -0.6758 0.0030 23 6 4.7937 -1.5549 0.0069 24 8 2.2873 -1.0890 0.0056 25 1 -0.3633 -1.0277 0.0057 26 1 -0.3633 0.5187 0.8871 27 1 -0.3633 0.5089 -0.8928 28 1 5.5824 1.0820 0.5068 29 1 4.5132 2.5052 0.4997 30 1 4.3392 2.3619 -1.9697 31 1 5.4083 0.9388 -1.9626 32 1 6.1596 3.5979 -0.9368 33 1 5.9453 3.5619 -3.3572 34 1 7.0139 2.1383 -3.3508 35 1 8.6893 3.2380 -4.6912 36 1 7.7457 4.7436 -4.7967 37 1 10.3865 5.1706 -7.3273 38 1 5.0895 -1.7614 1.0354 39 1 4.5692 -2.4924 -0.5019 40 1 5.6077 -1.0469 -0.5103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576458406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 22.223111 kcal Electronic energy + Delta-G solvation = -20163.718921 eV Core-core repulsion = 16979.356997 eV Total energy + Delta-G solvation = -3184.361924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.55497 -37.64456 -36.07240 -34.89131 -33.97562 -33.38969 -31.81799 -30.41688 -29.66918 -26.56188 -25.10634 -23.25632 -22.33456 -21.88747 -21.60474 -20.54015 -17.10206 -16.84698 -16.70482 -16.46828 -15.75409 -15.01191 -14.84849 -14.54497 -14.04263 -13.97824 -13.74349 -13.26506 -13.12905 -13.04116 -12.92594 -12.69001 -12.60352 -12.39187 -12.20342 -12.03929 -11.72542 -11.29179 -11.18405 -11.02256 -10.97788 -10.71748 -10.62511 -10.52247 -10.25635 -9.54867 -9.23118 -8.69438 -8.45348 -8.35583 -6.09224 -4.12304 1.21217 2.41885 2.44295 3.29709 3.36520 3.41182 3.57460 3.62776 3.72732 4.21328 4.42129 4.50445 4.77899 4.79606 4.81463 4.93208 5.01807 5.09673 5.16914 5.19298 5.28828 5.31793 5.38155 5.52029 5.56774 5.68519 5.75214 5.82088 5.94150 6.00488 6.13570 6.18564 6.36690 6.54775 7.06688 7.40736 7.44459 7.53784 7.56122 7.85947 8.23521 8.41398 8.92349 9.53134 11.01690 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.002653 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.012984 B =10551.803307 C =10777.510381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.181 3.819 3 N -0.477 5.477 4 C -0.006 4.006 5 C -0.037 4.037 6 C 0.065 3.935 7 N -0.691 5.691 8 C 0.067 3.933 9 C 0.007 3.993 10 H 0.112 0.888 11 C 0.240 3.760 12 N -0.476 5.476 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.047 4.047 23 C -0.069 4.069 24 O -0.204 6.204 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.339 0.661 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -15.912 12.162 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.026 4.026 3 N -0.207 5.207 4 C -0.126 4.126 5 C -0.075 4.075 6 C -0.064 4.064 7 N -0.322 5.322 8 C -0.062 4.062 9 C -0.015 4.015 10 H 0.129 0.871 11 C -0.076 4.076 12 N -0.153 5.153 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.100 4.100 23 C -0.126 4.126 24 O -0.092 6.092 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.585 -14.340 12.732 24.711 hybrid contribution 0.524 0.207 -0.595 0.819 sum -15.061 -14.134 12.138 23.957 Atomic orbital electron populations 1.20221 0.81395 1.04528 1.05021 1.26197 0.96369 0.78689 1.01311 1.70330 1.01806 1.30313 1.18241 1.21433 0.93046 0.92017 1.06088 1.19913 0.91531 0.98198 0.97897 1.21854 0.91440 0.97790 0.95336 1.60593 1.35455 1.20955 1.15233 1.22080 0.96026 0.99540 0.88600 1.19328 0.97107 0.83995 1.01031 0.87064 1.29366 0.91848 0.94834 0.91566 1.81082 1.10619 1.11694 1.11934 1.19167 0.96330 0.98543 0.86626 1.21150 1.07982 1.34418 0.92860 0.92473 1.24960 0.97745 0.95857 0.95460 1.69943 1.39567 1.46082 0.97480 0.86585 0.83607 0.80264 0.77595 1.20423 1.21179 1.19880 1.23231 0.83791 0.95118 1.07865 1.20322 0.90124 0.98293 1.03831 1.84367 1.16700 1.37774 1.70346 0.89529 0.88631 0.88560 0.89141 0.90228 0.94945 0.90741 0.84340 0.94661 0.89020 0.94191 0.95751 0.92802 0.89824 0.90398 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.18 1.93 8.34 -12.94 -0.11 1.82 16 3 N -0.48 -6.21 11.29 -7.35 -0.08 -6.29 16 4 C -0.01 -0.07 6.36 -82.81 -0.53 -0.59 16 5 C -0.04 -0.40 5.64 -27.88 -0.16 -0.56 16 6 C 0.07 0.77 5.67 -3.82 -0.02 0.75 16 7 N -0.69 -9.17 6.50 -113.78 -0.74 -9.91 16 8 C 0.07 1.01 5.12 -3.82 -0.02 0.99 16 9 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 10 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 11 C 0.24 4.91 12.98 -20.73 -0.27 4.64 16 12 N -0.48 -10.52 18.54 42.20 0.78 -9.73 16 13 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -14.04 8.60 -34.44 -0.30 -14.33 16 15 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.05 -0.50 7.39 -35.69 -0.26 -0.76 16 23 C -0.07 -0.47 10.04 36.00 0.36 -0.11 16 24 O -0.20 -2.26 10.77 5.38 0.06 -2.20 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.85 7.79 -51.93 -0.40 0.45 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.34 4.71 7.81 -39.29 -0.31 4.40 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.61 7.80 -51.93 -0.40 0.21 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -32.44 349.34 -6.52 -38.95 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.15 Total: -1.58 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.37 Total: -5.96 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.70 Total: -50.83 kcal Atomic # 8 Polarization: -2.26 SS G_CDS: 0.06 Total: -2.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.44 -6.52 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576458406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.177 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds