Wall clock time and date at job start Mon Mar 30 2020 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30255 * 125.62181 * 2 1 4 4 C 1.34475 * 108.70073 * 180.18508 * 3 2 1 5 5 C 1.50705 * 126.16117 * 179.82191 * 4 3 2 6 6 C 1.52995 * 109.47244 * 269.69277 * 5 4 3 7 7 N 1.46906 * 109.46978 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 H 1.08990 * 109.47170 * 54.99770 * 9 8 7 11 11 C 1.47196 * 109.47160 * 294.99517 * 9 8 7 12 12 N 8.72717 * 131.73522 * 344.44642 * 2 1 3 13 13 C 1.53002 * 109.46776 * 174.99873 * 9 8 7 14 14 C 1.50701 * 109.46807 * 184.99822 * 13 9 8 15 15 H 1.07998 * 120.00496 * 359.97438 * 14 13 9 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 13 9 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46778 * 89.99942 * 18 16 14 20 20 H 1.48494 * 109.46946 * 209.99639 * 18 16 14 21 21 H 1.48502 * 109.47167 * 330.00099 * 18 16 14 22 22 C 1.34331 * 107.67026 * 359.56680 * 4 3 2 23 23 C 1.50694 * 126.44121 * 180.24144 * 22 4 3 24 24 O 1.33965 * 125.62028 * 179.70687 * 2 1 3 25 25 H 1.09001 * 109.46810 * 180.31755 * 1 2 3 26 26 H 1.09000 * 109.46889 * 300.31618 * 1 2 3 27 27 H 1.09001 * 109.46951 * 60.31867 * 1 2 3 28 28 H 1.09005 * 109.46616 * 149.69833 * 5 4 3 29 29 H 1.09002 * 109.47100 * 29.69971 * 5 4 3 30 30 H 1.08995 * 109.46859 * 60.00696 * 6 5 4 31 31 H 1.09002 * 109.47639 * 300.00364 * 6 5 4 32 32 H 1.00898 * 110.99995 * 303.95410 * 7 6 5 33 33 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 34 34 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 35 35 H 1.08993 * 109.47416 * 304.99509 * 13 9 8 36 36 H 1.09001 * 109.46966 * 65.00241 * 13 9 8 37 37 H 0.97010 * 119.99808 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47293 * 89.99843 * 23 22 4 39 39 H 1.09002 * 109.46576 * 209.99929 * 23 22 4 40 40 H 1.09002 * 109.47334 * 329.99061 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 -0.0041 5 6 4.7571 1.5727 -0.0094 6 6 5.1644 1.8713 -1.4536 7 7 6.3393 2.7532 -1.4586 8 6 6.7594 3.0625 -2.8318 9 6 7.9830 3.9804 -2.7962 10 1 8.7664 3.5183 -2.1957 11 6 7.6086 5.2743 -2.2028 12 7 7.3167 6.2740 -1.7462 13 6 8.4959 4.2019 -4.2206 14 6 9.7709 5.0040 -4.1762 15 1 10.1748 5.3242 -3.2272 16 6 10.4213 5.3301 -5.3474 17 7 9.9287 4.9415 -6.5033 18 14 12.0014 6.3250 -5.2926 19 1 13.1627 5.4046 -5.1952 20 1 12.1171 7.1388 -6.5293 21 1 11.9805 7.2224 -4.1095 22 6 3.5698 -0.6758 0.0030 23 6 4.7937 -1.5549 0.0069 24 8 2.2873 -1.0890 0.0056 25 1 -0.3633 -1.0277 0.0057 26 1 -0.3633 0.5187 0.8871 27 1 -0.3633 0.5089 -0.8928 28 1 5.5824 1.0820 0.5068 29 1 4.5132 2.5052 0.4997 30 1 4.3392 2.3619 -1.9697 31 1 5.4083 0.9388 -1.9626 32 1 6.1596 3.5979 -0.9368 33 1 5.9453 3.5619 -3.3572 34 1 7.0139 2.1383 -3.3508 35 1 8.6893 3.2380 -4.6912 36 1 7.7457 4.7436 -4.7967 37 1 10.3865 5.1706 -7.3273 38 1 5.0895 -1.7614 1.0354 39 1 4.5692 -2.4924 -0.5019 40 1 5.6077 -1.0469 -0.5103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576458406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:23 Heat of formation + Delta-G solvation = -0.565229 kcal Electronic energy + Delta-G solvation = -20164.707098 eV Core-core repulsion = 16979.356997 eV Total energy + Delta-G solvation = -3185.350101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.34109 -39.01181 -37.27416 -36.03046 -35.43078 -34.56918 -33.35581 -30.93696 -30.82456 -28.15733 -26.01655 -24.53112 -23.59365 -23.30512 -22.56351 -21.35489 -18.54793 -18.25936 -17.89612 -17.53091 -16.90299 -16.62852 -15.85850 -15.74424 -15.04303 -14.97086 -14.68097 -14.33996 -14.31959 -14.16493 -13.91937 -13.65970 -13.58988 -13.50119 -13.22944 -13.13016 -13.08673 -13.03575 -12.69356 -12.48192 -12.32753 -12.20290 -11.90938 -11.88085 -11.46203 -11.38485 -11.14170 -10.54448 -9.49488 -9.43526 -8.19200 -6.27370 0.44992 1.40931 1.42638 1.51855 1.59899 1.75185 1.93296 1.95246 2.41903 2.95725 3.15897 3.24998 3.26982 3.80039 3.94340 4.05020 4.23126 4.24497 4.30966 4.42023 4.53654 4.62466 4.65477 4.69036 4.70139 4.72758 4.92048 4.94585 4.97552 5.02791 5.04441 5.16817 5.27786 5.41076 5.47880 5.62763 5.79666 5.94085 6.20924 6.27474 6.74984 6.76923 6.87748 7.41249 8.91789 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.002653 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.012984 B =10551.803307 C =10777.510381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.177 3.823 3 N -0.517 5.517 4 C -0.033 4.033 5 C -0.028 4.028 6 C 0.072 3.928 7 N -0.684 5.684 8 C 0.077 3.923 9 C 0.020 3.980 10 H 0.128 0.872 11 C 0.250 3.750 12 N -0.506 5.506 13 C 0.038 3.962 14 C -0.538 4.538 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.950 3.050 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.047 4.047 23 C -0.069 4.069 24 O -0.212 6.212 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.087 0.913 32 H 0.335 0.665 33 H 0.028 0.972 34 H 0.109 0.891 35 H 0.039 0.961 36 H -0.002 1.002 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 -17.344 12.969 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.030 4.030 3 N -0.247 5.247 4 C -0.153 4.153 5 C -0.066 4.066 6 C -0.057 4.057 7 N -0.315 5.315 8 C -0.053 4.053 9 C -0.002 4.002 10 H 0.146 0.854 11 C -0.066 4.066 12 N -0.184 5.184 13 C -0.001 4.001 14 C -0.577 4.577 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.100 4.100 23 C -0.125 4.125 24 O -0.100 6.100 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.046 0.954 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.370 -15.780 13.553 25.864 hybrid contribution 0.399 0.630 -0.833 1.118 sum -14.971 -15.150 12.720 24.808 Atomic orbital electron populations 1.20476 0.78437 1.06274 1.05901 1.27118 0.97883 0.78133 0.99835 1.70310 1.02758 1.31746 1.19927 1.21615 0.93023 0.92896 1.07717 1.19823 0.91912 0.97784 0.97090 1.21832 0.90132 0.97627 0.96110 1.60590 1.36180 1.20817 1.13869 1.21945 0.94246 0.99345 0.89740 1.19245 0.99048 0.83769 0.98100 0.85402 1.29755 0.90962 0.94906 0.90929 1.81084 1.11832 1.12533 1.12928 1.18996 0.94486 0.97472 0.89171 1.21562 1.09091 1.34339 0.92669 0.92692 1.25730 1.00770 0.97024 0.95354 1.70038 1.40962 1.47423 0.98007 0.85674 0.80558 0.78979 0.77240 1.19026 1.21096 1.20129 1.23844 0.84483 0.95233 1.06406 1.20503 0.88676 0.98216 1.05107 1.84390 1.17107 1.38077 1.70471 0.87360 0.87483 0.87737 0.87441 0.91443 0.96634 0.89436 0.84768 0.95407 0.87237 0.94320 0.98336 0.92720 0.88270 0.89249 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.18 3.64 8.34 88.34 0.74 4.37 16 3 N -0.52 -13.40 11.29 -291.97 -3.30 -16.70 16 4 C -0.03 -0.77 6.36 41.26 0.26 -0.51 16 5 C -0.03 -0.58 5.64 29.85 0.17 -0.41 16 6 C 0.07 1.62 5.67 86.30 0.49 2.11 16 7 N -0.68 -17.10 6.50 -513.88 -3.34 -20.44 16 8 C 0.08 2.21 5.12 86.30 0.44 2.65 16 9 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 10 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 11 C 0.25 10.09 12.98 89.43 1.16 11.25 16 12 N -0.51 -22.23 18.54 20.02 0.37 -21.86 16 13 C 0.04 1.73 4.42 29.85 0.13 1.86 16 14 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 15 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 16 C 0.01 0.55 5.46 84.66 0.46 1.01 16 17 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 C -0.05 -0.93 7.39 24.79 0.18 -0.74 16 23 C -0.07 -0.78 10.04 71.23 0.72 -0.07 16 24 O -0.21 -4.48 10.77 -3.65 -0.04 -4.52 16 25 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 1.82 7.79 -2.38 -0.02 1.81 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.34 8.97 7.81 -89.70 -0.70 8.27 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.26 14.43 8.31 -92.70 -0.77 13.65 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.05 7.80 -2.39 -0.02 1.03 16 Total: -1.00 -69.28 349.34 2.03 -67.25 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.34 Total: 9.57 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.69 Total: -5.90 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -5.98 Total: -111.95 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.04 Total: -4.52 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.28 2.03 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576458406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.684 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds