Wall clock time and date at job start Mon Mar 30 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38668 * 120.41909 * 2 1 4 4 C 1.38633 * 118.42390 * 180.02562 * 3 2 1 5 5 C 1.38226 * 119.15502 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.61799 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47138 * 95.00037 * 6 5 4 8 8 C 1.34777 * 119.99665 * 180.28062 * 7 6 5 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 6 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 6 11 11 C 1.46507 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46968 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.46837 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47362 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99305 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00190 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99993 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47271 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47290 * 120.00081 * 18 16 14 21 21 H 1.48508 * 109.46897 * 239.99947 * 18 16 14 22 22 N 1.31857 * 120.76685 * 0.26003 * 5 4 3 23 23 C 1.31886 * 121.72181 * 359.47718 * 22 5 4 24 24 H 1.08994 * 109.47199 * 89.99922 * 1 2 3 25 25 H 1.09000 * 109.47196 * 210.00585 * 1 2 3 26 26 H 1.09005 * 109.46684 * 330.00166 * 1 2 3 27 27 H 1.08005 * 120.79244 * 359.97438 * 3 2 1 28 28 H 1.07991 * 120.42007 * 180.02562 * 4 3 2 29 29 H 1.09009 * 109.46601 * 334.99939 * 6 5 4 30 30 H 1.08998 * 109.47035 * 215.00447 * 6 5 4 31 31 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 32 32 H 0.97000 * 120.00523 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47039 * 300.00042 * 11 10 8 34 34 H 1.08994 * 109.46660 * 60.00264 * 11 10 8 35 35 H 1.08998 * 109.46943 * 299.99694 * 12 11 10 36 36 H 1.08994 * 109.47116 * 60.00083 * 12 11 10 37 37 H 1.08996 * 109.47756 * 299.99976 * 13 12 11 38 38 H 1.09008 * 109.47349 * 59.99909 * 13 12 11 39 39 H 0.96996 * 119.99510 * 180.02562 * 17 16 14 40 40 H 1.08001 * 119.61569 * 180.27577 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2150 -0.2876 1.3739 8 6 7.5384 -0.3601 1.6187 9 8 8.3305 -0.3138 0.6974 10 7 7.9837 -0.4838 2.8847 11 6 9.4223 -0.5632 3.1507 12 6 9.6556 -0.6993 4.6567 13 6 11.1578 -0.7815 4.9346 14 6 11.3878 -0.9149 6.4180 15 1 10.5465 -0.9391 7.0947 16 6 12.6721 -1.0072 6.9110 17 7 13.6965 -0.9782 6.0867 18 14 12.9570 -1.1733 8.7496 19 1 11.6500 -1.1803 9.4544 20 1 13.6762 -2.4427 9.0265 21 1 13.7716 -0.0281 9.2297 22 7 3.5254 -1.1996 -0.0051 23 6 2.2066 -1.1916 0.0003 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6890 2.1424 -0.0004 28 1 4.1735 2.0592 -0.0001 29 1 6.1338 0.7679 -0.4368 30 1 6.0576 -1.0038 -0.5911 31 1 5.5831 -0.3241 2.1089 32 1 7.3518 -0.5211 3.6197 33 1 9.8391 -1.4306 2.6390 34 1 9.9093 0.3417 2.7875 35 1 9.2387 0.1680 5.1688 36 1 9.1685 -1.6043 5.0195 37 1 11.5752 -1.6484 4.4225 38 1 11.6446 0.1239 4.5718 39 1 14.6000 -1.0435 6.4336 40 1 1.6672 -2.1272 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576749002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:50 Heat of formation + Delta-G solvation = -17.262106 kcal Electronic energy + Delta-G solvation = -19757.029848 eV Core-core repulsion = 16570.955716 eV Total energy + Delta-G solvation = -3186.074132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80857 -39.63278 -35.83964 -34.99335 -33.65624 -33.23678 -32.34353 -31.09294 -28.88173 -26.67325 -25.29365 -23.90651 -22.94460 -21.80875 -20.81607 -20.35259 -18.28174 -17.12257 -16.84245 -16.27215 -15.83926 -15.51973 -15.45963 -14.77092 -14.46348 -14.23467 -14.10989 -13.95309 -13.62617 -13.22359 -13.10299 -12.84893 -12.72502 -12.26676 -11.93263 -11.76828 -11.64048 -10.90232 -10.69412 -10.54670 -10.21956 -10.13632 -9.83886 -9.82769 -9.45141 -9.25623 -9.18432 -9.08173 -8.55992 -8.35272 -5.99736 -4.02583 0.56056 0.84828 2.80547 3.31327 3.38686 3.41003 3.42116 3.44444 3.83404 4.25863 4.33811 4.43700 4.48420 4.50364 4.52149 4.89390 5.05749 5.10288 5.24746 5.36041 5.36932 5.43211 5.58727 5.70686 5.75903 5.81467 5.86027 6.22459 6.25163 6.40658 6.57200 6.66539 6.84179 7.05949 7.10315 7.57658 7.66942 7.79871 7.99633 8.17977 8.40633 8.78557 9.04402 9.61422 11.11594 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.002243 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.654905 B =12477.589041 C =12914.351718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C -0.079 4.079 4 C -0.147 4.147 5 C 0.103 3.897 6 C 0.193 3.807 7 N -0.745 5.745 8 C 0.702 3.298 9 O -0.592 6.592 10 N -0.741 5.741 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.464 5.464 23 C 0.099 3.901 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.395 0.605 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.080 3.989 -12.537 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.105 4.105 4 C -0.168 4.168 5 C -0.035 4.035 6 C 0.068 3.932 7 N -0.402 5.402 8 C 0.402 3.598 9 O -0.470 6.470 10 N -0.395 5.395 11 C 0.012 3.988 12 C -0.158 4.158 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.173 5.173 23 C -0.059 4.059 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.643 3.220 -13.417 30.004 hybrid contribution -0.853 0.690 1.694 2.018 sum -27.496 3.910 -11.723 30.146 Atomic orbital electron populations 1.20747 0.90041 1.03336 1.02748 1.21021 0.97771 0.94305 1.00568 1.21529 0.93940 0.98347 0.96677 1.22064 0.95206 0.99130 1.00355 1.21246 0.96167 0.88695 0.97379 1.19857 0.86052 1.03500 0.83746 1.44987 1.05827 1.80955 1.08433 1.15951 0.81920 0.78006 0.83912 1.90923 1.54516 1.58112 1.43480 1.45372 1.09628 1.78645 1.05861 1.21517 0.77423 1.01814 0.98052 1.21889 1.01878 1.00742 0.91331 1.19038 0.88016 0.97688 0.96717 1.21247 0.92085 1.50209 0.92394 0.92611 1.25039 0.96286 0.95380 0.97857 1.69978 0.98479 1.50535 1.34250 0.86527 0.78174 0.77641 0.85577 1.19788 1.21015 1.21029 1.67529 1.08236 1.30968 1.10528 1.22715 0.89586 0.97653 0.95979 0.90732 0.90978 0.91205 0.84616 0.84328 0.90003 0.89849 0.77195 0.77329 0.91915 0.91918 0.92794 0.92766 0.96200 0.96216 0.93000 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.04 36.01 0.36 -0.04 16 2 C -0.13 -0.85 5.90 -104.48 -0.62 -1.47 16 3 C -0.08 -0.50 9.86 -39.28 -0.39 -0.88 16 4 C -0.15 -1.10 9.72 -39.44 -0.38 -1.48 16 5 C 0.10 0.98 6.15 -82.58 -0.51 0.48 16 6 C 0.19 2.12 5.98 -5.19 -0.03 2.09 16 7 N -0.75 -8.87 5.55 -66.41 -0.37 -9.23 16 8 C 0.70 11.20 8.57 -86.92 -0.74 10.45 16 9 O -0.59 -11.92 16.34 5.29 0.09 -11.84 16 10 N -0.74 -11.20 5.56 -65.22 -0.36 -11.56 16 11 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 N -0.46 -4.80 10.27 -9.47 -0.10 -4.89 16 23 C 0.10 0.77 10.86 -17.55 -0.19 0.58 16 24 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 26 H 0.07 0.20 8.10 -51.93 -0.42 -0.22 16 27 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 28 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 29 H 0.08 0.85 8.04 -51.92 -0.42 0.43 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.39 3.85 8.48 -40.82 -0.35 3.50 16 32 H 0.39 4.80 8.49 -40.82 -0.35 4.45 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -34.56 345.99 -9.17 -43.73 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.14 Total: 1.64 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.21 Total: -3.40 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.09 Total: -51.98 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.56 -9.17 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576749002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.468 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds