Wall clock time and date at job start Mon Mar 30 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38668 * 120.41909 * 2 1 4 4 C 1.38633 * 118.42390 * 180.02562 * 3 2 1 5 5 C 1.38226 * 119.15502 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.61799 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47138 * 95.00037 * 6 5 4 8 8 C 1.34777 * 119.99665 * 180.28062 * 7 6 5 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 6 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 6 11 11 C 1.46507 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46968 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.46837 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47362 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99305 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00190 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99993 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47271 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47290 * 120.00081 * 18 16 14 21 21 H 1.48508 * 109.46897 * 239.99947 * 18 16 14 22 22 N 1.31857 * 120.76685 * 0.26003 * 5 4 3 23 23 C 1.31886 * 121.72181 * 359.47718 * 22 5 4 24 24 H 1.08994 * 109.47199 * 89.99922 * 1 2 3 25 25 H 1.09000 * 109.47196 * 210.00585 * 1 2 3 26 26 H 1.09005 * 109.46684 * 330.00166 * 1 2 3 27 27 H 1.08005 * 120.79244 * 359.97438 * 3 2 1 28 28 H 1.07991 * 120.42007 * 180.02562 * 4 3 2 29 29 H 1.09009 * 109.46601 * 334.99939 * 6 5 4 30 30 H 1.08998 * 109.47035 * 215.00447 * 6 5 4 31 31 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 32 32 H 0.97000 * 120.00523 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47039 * 300.00042 * 11 10 8 34 34 H 1.08994 * 109.46660 * 60.00264 * 11 10 8 35 35 H 1.08998 * 109.46943 * 299.99694 * 12 11 10 36 36 H 1.08994 * 109.47116 * 60.00083 * 12 11 10 37 37 H 1.08996 * 109.47756 * 299.99976 * 13 12 11 38 38 H 1.09008 * 109.47349 * 59.99909 * 13 12 11 39 39 H 0.96996 * 119.99510 * 180.02562 * 17 16 14 40 40 H 1.08001 * 119.61569 * 180.27577 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2150 -0.2876 1.3739 8 6 7.5384 -0.3601 1.6187 9 8 8.3305 -0.3138 0.6974 10 7 7.9837 -0.4838 2.8847 11 6 9.4223 -0.5632 3.1507 12 6 9.6556 -0.6993 4.6567 13 6 11.1578 -0.7815 4.9346 14 6 11.3878 -0.9149 6.4180 15 1 10.5465 -0.9391 7.0947 16 6 12.6721 -1.0072 6.9110 17 7 13.6965 -0.9782 6.0867 18 14 12.9570 -1.1733 8.7496 19 1 11.6500 -1.1803 9.4544 20 1 13.6762 -2.4427 9.0265 21 1 13.7716 -0.0281 9.2297 22 7 3.5254 -1.1996 -0.0051 23 6 2.2066 -1.1916 0.0003 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6890 2.1424 -0.0004 28 1 4.1735 2.0592 -0.0001 29 1 6.1338 0.7679 -0.4368 30 1 6.0576 -1.0038 -0.5911 31 1 5.5831 -0.3241 2.1089 32 1 7.3518 -0.5211 3.6197 33 1 9.8391 -1.4306 2.6390 34 1 9.9093 0.3417 2.7875 35 1 9.2387 0.1680 5.1688 36 1 9.1685 -1.6043 5.0195 37 1 11.5752 -1.6484 4.4225 38 1 11.6446 0.1239 4.5718 39 1 14.6000 -1.0435 6.4336 40 1 1.6672 -2.1272 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576749002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:49 Heat of formation + Delta-G solvation = -41.637634 kcal Electronic energy + Delta-G solvation = -19758.086850 eV Core-core repulsion = 16570.955716 eV Total energy + Delta-G solvation = -3187.131134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49368 -40.81641 -37.17930 -36.18187 -35.18771 -34.32543 -33.19272 -32.65739 -29.72740 -28.29012 -26.16537 -24.81698 -24.34593 -22.43985 -22.30254 -21.89428 -19.48534 -18.56062 -17.74412 -17.61011 -16.88292 -16.75928 -16.46157 -16.01591 -15.70373 -15.60203 -15.24705 -14.91716 -14.28879 -14.27153 -13.94516 -13.75485 -13.70591 -13.47510 -13.36051 -13.18789 -12.76610 -12.53834 -12.43181 -12.32638 -11.68662 -11.66485 -11.33768 -11.14818 -10.75720 -10.55237 -10.46814 -10.40276 -9.83746 -9.80135 -8.18690 -6.30034 -0.02158 0.31507 1.42113 1.42392 1.55620 1.70857 2.11756 2.42502 2.77400 3.14982 3.17053 3.38393 3.69587 3.92757 4.01849 4.05807 4.17563 4.24847 4.34121 4.51436 4.57693 4.66868 4.73666 4.84608 4.90130 4.97420 5.00145 5.14095 5.18071 5.21277 5.34773 5.36000 5.47194 5.55056 5.72551 5.74901 5.85525 5.94911 6.23724 6.87393 6.98101 7.05751 7.39344 7.53817 8.93648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037391 B = 0.002243 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.654905 B =12477.589041 C =12914.351718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.146 4.146 5 C 0.084 3.916 6 C 0.196 3.804 7 N -0.725 5.725 8 C 0.701 3.299 9 O -0.637 6.637 10 N -0.729 5.729 11 C 0.150 3.850 12 C -0.100 4.100 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.496 5.496 23 C 0.083 3.917 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.408 0.592 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.067 0.933 37 H -0.008 1.008 38 H -0.006 1.006 39 H 0.263 0.737 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.036 4.683 -11.254 33.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.166 4.166 5 C -0.053 4.053 6 C 0.071 3.929 7 N -0.382 5.382 8 C 0.400 3.600 9 O -0.519 6.519 10 N -0.385 5.385 11 C 0.025 3.975 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.205 5.205 23 C -0.075 4.075 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.247 0.753 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.011 0.989 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -29.677 3.916 -12.111 32.292 hybrid contribution -0.028 0.474 1.223 1.312 sum -29.705 4.390 -10.889 31.941 Atomic orbital electron populations 1.20817 0.87885 1.04377 1.03628 1.21355 0.99285 0.93727 0.98609 1.21901 0.93479 0.99592 0.95676 1.22224 0.96086 0.98725 0.99587 1.20995 0.95019 0.89581 0.99686 1.19841 0.87645 1.02743 0.82653 1.44825 1.04476 1.79354 1.09540 1.16079 0.82793 0.77728 0.83368 1.90895 1.56045 1.60127 1.44830 1.45022 1.08569 1.78461 1.06430 1.21098 0.79223 1.00490 0.96697 1.21588 0.97790 1.02012 0.92434 1.18955 0.91750 0.95165 0.95654 1.21710 0.92644 1.49797 0.93591 0.91525 1.26045 0.96085 0.94936 1.03225 1.70123 0.99044 1.51611 1.36738 0.85348 0.78590 0.77608 0.79162 1.18200 1.20622 1.20556 1.67429 1.09658 1.31777 1.11674 1.23073 0.88968 0.99191 0.96264 0.89774 0.90168 0.89994 0.81851 0.82923 0.89570 0.91943 0.75619 0.75254 0.93568 0.93228 0.91263 0.91481 0.98938 0.98794 0.92831 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.04 71.24 0.72 0.26 16 2 C -0.13 -1.31 5.90 -19.78 -0.12 -1.43 16 3 C -0.08 -0.80 9.86 22.47 0.22 -0.58 16 4 C -0.15 -1.93 9.72 22.36 0.22 -1.72 16 5 C 0.08 1.56 6.15 42.55 0.26 1.82 16 6 C 0.20 4.34 5.98 85.63 0.51 4.85 16 7 N -0.73 -16.89 5.55 -482.29 -2.68 -19.57 16 8 C 0.70 22.28 8.57 179.05 1.53 23.81 16 9 O -0.64 -26.29 16.34 -3.98 -0.06 -26.35 16 10 N -0.73 -21.49 5.56 -478.53 -2.66 -24.15 16 11 C 0.15 5.52 5.67 86.38 0.49 6.01 16 12 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 13 C 0.02 1.19 4.97 29.85 0.15 1.34 16 14 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 18 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 N -0.50 -10.04 10.27 -183.89 -1.89 -11.93 16 23 C 0.08 1.19 10.86 84.67 0.92 2.11 16 24 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.08 0.23 8.09 -2.39 -0.02 0.21 16 26 H 0.08 0.18 8.10 -2.38 -0.02 0.16 16 27 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 28 H 0.15 1.50 8.06 -2.92 -0.02 1.47 16 29 H 0.09 1.81 8.04 -2.38 -0.02 1.79 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.41 7.41 8.48 -92.71 -0.79 6.63 16 32 H 0.41 9.23 8.49 -92.71 -0.79 8.44 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -75.99 345.99 0.25 -75.74 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.53 Total: 14.71 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.76 Total: 2.69 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -6.94 Total: -112.98 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.35 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.99 0.25 -75.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576749002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.100 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds