Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39758 * 125.84008 * 2 1 4 4 C 1.36107 * 107.82445 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21430 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99906 * 0.02562 * 5 4 3 7 7 O 1.21298 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00415 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47394 * 185.54258 * 8 6 5 10 10 C 1.52997 * 115.54885 * 279.63762 * 9 8 6 11 11 C 1.53001 * 117.49821 * 133.92883 * 9 8 6 12 12 C 1.52998 * 60.00024 * 252.50869 * 11 9 8 13 13 N 1.35262 * 107.57361 * 359.97438 * 4 3 2 14 14 C 1.46501 * 126.04710 * 180.02562 * 13 4 3 15 15 C 1.50702 * 109.47164 * 269.99686 * 14 13 4 16 16 H 1.08002 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99896 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99877 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99921 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47363 * 89.99463 * 19 17 15 21 21 H 1.48507 * 109.46989 * 209.99464 * 19 17 15 22 22 H 1.48495 * 109.47258 * 329.99215 * 19 17 15 23 23 N 1.30853 * 125.83403 * 180.02562 * 2 1 3 24 24 H 1.09009 * 109.47132 * 270.02689 * 1 2 3 25 25 H 1.08997 * 109.46884 * 30.02600 * 1 2 3 26 26 H 1.09004 * 109.47454 * 150.02733 * 1 2 3 27 27 H 1.07988 * 126.08335 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00114 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.46453 * 305.54324 * 8 6 5 30 30 H 1.09000 * 109.47223 * 65.53619 * 8 6 5 31 31 H 1.09004 * 109.47118 * 65.00002 * 10 9 8 32 32 H 1.09001 * 109.47114 * 185.00079 * 10 9 8 33 33 H 1.09003 * 109.47331 * 305.00220 * 10 9 8 34 34 H 1.09001 * 117.49797 * 0.02562 * 11 9 8 35 35 H 1.09003 * 117.49563 * 145.01964 * 11 9 8 36 36 H 1.09000 * 117.50366 * 252.51102 * 12 11 9 37 37 H 1.09005 * 117.49462 * 107.49036 * 12 11 9 38 38 H 1.08999 * 109.46839 * 30.00384 * 14 13 4 39 39 H 1.09005 * 109.46708 * 150.00104 * 14 13 4 40 40 H 0.97006 * 120.00208 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7120 0.0006 5 7 4.7513 1.5273 0.0003 6 6 4.6158 2.8683 -0.0002 7 8 3.5097 3.3661 -0.0007 8 6 5.8385 3.7493 -0.0011 9 6 5.4130 5.2123 0.1379 10 6 4.9305 5.8843 -1.1491 11 6 6.1751 6.0771 1.1441 12 6 4.7432 5.6319 1.4479 13 7 3.6092 -0.6406 0.0015 14 6 4.7870 -1.5118 0.0029 15 6 5.1918 -1.8115 -1.4175 16 1 4.6283 -1.3944 -2.2390 17 6 6.2821 -2.6174 -1.6681 18 7 6.6350 -2.8794 -2.9075 19 14 7.2571 -3.3382 -0.2470 20 1 6.6832 -4.6550 0.1295 21 1 8.6733 -3.5145 -0.6575 22 1 7.1899 -2.4180 0.9165 23 7 2.2730 -1.0608 -0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9902 2.1595 0.0004 28 1 5.6359 1.1293 0.0004 29 1 6.4829 3.4772 0.8350 30 1 6.3816 3.6161 -0.9367 31 1 4.0126 5.4036 -1.4878 32 1 4.7385 6.9401 -0.9578 33 1 5.6964 5.7878 -1.9186 34 1 6.9798 5.6038 1.7067 35 1 6.3329 7.1250 0.8891 36 1 3.9589 6.3869 1.3929 37 1 4.6056 4.8655 2.2108 38 1 5.6080 -1.0119 0.5170 39 1 4.5495 -2.4430 0.5172 40 1 7.4019 -3.4467 -3.0839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579546465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = 60.784752 kcal Electronic energy + Delta-G solvation = -21486.481593 eV Core-core repulsion = 18303.791827 eV Total energy + Delta-G solvation = -3182.689766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92715 -39.57153 -37.57939 -34.70683 -33.73096 -32.16737 -30.32205 -29.40122 -28.52359 -27.50760 -26.30154 -22.69736 -22.50922 -21.74722 -19.88036 -19.46084 -18.76469 -17.21398 -16.86458 -16.36318 -15.79206 -15.26833 -14.73915 -14.62626 -14.17679 -13.92698 -13.82436 -13.12229 -12.90758 -12.75849 -12.63391 -12.45804 -12.30016 -12.08723 -11.89332 -11.80166 -11.59520 -11.34266 -11.13098 -10.85027 -10.45879 -10.36540 -10.23539 -10.01101 -9.77161 -9.73757 -9.39978 -8.87200 -7.94433 -7.46464 -6.34514 -4.38919 2.27116 2.75817 3.07502 3.09785 3.13417 3.17241 3.57027 3.59164 3.85429 4.12849 4.48233 4.64145 4.73602 4.88285 4.92189 5.03097 5.31094 5.34609 5.48160 5.53658 5.61789 5.75161 5.82768 5.88287 5.95245 6.00219 6.05275 6.06594 6.16554 6.22507 6.25101 6.34193 6.38576 6.66168 6.75150 7.19175 7.46478 7.58908 7.79668 8.19467 8.35450 8.58592 8.72081 9.20177 10.77775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005522 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.907479 B = 5069.723072 C = 6479.522761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 C -0.293 4.293 4 C 0.307 3.693 5 N -0.645 5.645 6 C 0.519 3.481 7 O -0.505 6.505 8 C -0.101 4.101 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.178 4.178 12 C -0.157 4.157 13 N -0.345 5.345 14 C 0.230 3.770 15 C -0.545 4.545 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.883 5.883 19 Si 0.874 3.126 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.266 1.266 23 N -0.285 5.285 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.414 0.586 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 15.042 7.969 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.325 4.325 4 C 0.085 3.915 5 N -0.292 5.292 6 C 0.306 3.694 7 O -0.378 6.378 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.171 4.171 11 C -0.215 4.215 12 C -0.194 4.194 13 N -0.131 5.131 14 C 0.111 3.889 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.124 4.124 18 N -0.520 5.520 19 Si 0.700 3.300 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.191 1.191 23 N -0.110 5.110 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.250 0.750 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.110 13.980 7.842 16.068 hybrid contribution 1.350 -0.063 0.499 1.440 sum 0.240 13.917 8.342 16.227 Atomic orbital electron populations 1.20029 0.87475 1.02579 1.02036 1.22058 0.96559 0.91037 1.01460 1.21276 0.88980 1.00477 1.21797 1.17952 0.88284 0.83004 1.02293 1.42908 1.08005 1.05859 1.72417 1.20633 0.91775 0.80985 0.76049 1.90624 1.26767 1.73546 1.46876 1.21203 0.95492 0.92272 1.05172 1.21010 1.04516 0.92828 0.92614 1.21314 1.01656 0.99389 0.94726 1.23179 0.95621 0.99909 1.02796 1.22893 0.95009 1.03154 0.98325 1.48888 1.06141 1.02096 1.55925 1.19926 0.79343 0.90000 0.99657 1.21198 1.14175 1.32616 0.90357 0.90070 1.24821 0.96606 0.95222 0.95793 1.69873 1.26869 1.36551 1.18688 0.86900 0.79988 0.80674 0.82473 1.19469 1.20472 1.19059 1.77356 0.85839 1.21790 1.25997 0.91358 0.91047 0.91424 0.81955 0.74992 0.88632 0.87636 0.91192 0.92638 0.92412 0.88885 0.88756 0.88758 0.89070 0.94340 0.93233 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.09 7.21 -82.44 -0.59 0.49 16 3 C -0.29 -5.98 9.58 -39.78 -0.38 -6.36 16 4 C 0.31 6.40 7.66 -153.15 -1.17 5.23 16 5 N -0.64 -10.99 5.42 -11.46 -0.06 -11.05 16 6 C 0.52 7.85 7.65 -10.98 -0.08 7.77 16 7 O -0.51 -8.79 12.08 5.54 0.07 -8.72 16 8 C -0.10 -1.10 5.64 -27.89 -0.16 -1.26 16 9 C -0.11 -1.15 1.59 -154.51 -0.25 -1.39 16 10 C -0.11 -1.18 9.66 37.16 0.36 -0.82 16 11 C -0.18 -1.54 9.87 -26.73 -0.26 -1.81 16 12 C -0.16 -1.64 9.19 -26.73 -0.25 -1.89 16 13 N -0.35 -7.98 3.60 -61.57 -0.22 -8.20 16 14 C 0.23 5.41 5.07 -5.19 -0.03 5.38 16 15 C -0.55 -14.93 9.94 -34.44 -0.34 -15.27 16 16 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.88 -25.67 13.96 55.43 0.77 -24.89 16 19 Si 0.87 19.53 27.47 -169.99 -4.67 14.86 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.50 6.54 56.52 0.37 -5.13 16 23 N -0.28 -6.60 12.57 33.65 0.42 -6.18 16 24 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.16 3.21 5.83 -52.49 -0.31 2.90 16 28 H 0.41 6.38 7.96 -40.82 -0.33 6.05 16 29 H 0.10 0.84 7.95 -51.92 -0.41 0.43 16 30 H 0.11 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 32 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.82 6.56 -51.93 -0.34 0.48 16 39 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -32.36 335.94 -7.49 -39.85 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.98 Total: 7.68 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.88 Total: -8.41 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.91 Total: -50.32 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.36 -7.49 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579546465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.635 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds