Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39758 * 125.84008 * 2 1 4 4 C 1.36107 * 107.82445 * 179.97438 * 3 2 1 5 5 N 1.39480 * 126.21430 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99906 * 0.02562 * 5 4 3 7 7 O 1.21298 * 120.00120 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00415 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47394 * 185.54258 * 8 6 5 10 10 C 1.52997 * 115.54885 * 279.63762 * 9 8 6 11 11 C 1.53001 * 117.49821 * 133.92883 * 9 8 6 12 12 C 1.52998 * 60.00024 * 252.50869 * 11 9 8 13 13 N 1.35262 * 107.57361 * 359.97438 * 4 3 2 14 14 C 1.46501 * 126.04710 * 180.02562 * 13 4 3 15 15 C 1.50702 * 109.47164 * 269.99686 * 14 13 4 16 16 H 1.08002 * 119.99608 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99896 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99877 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99921 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47363 * 89.99463 * 19 17 15 21 21 H 1.48507 * 109.46989 * 209.99464 * 19 17 15 22 22 H 1.48495 * 109.47258 * 329.99215 * 19 17 15 23 23 N 1.30853 * 125.83403 * 180.02562 * 2 1 3 24 24 H 1.09009 * 109.47132 * 270.02689 * 1 2 3 25 25 H 1.08997 * 109.46884 * 30.02600 * 1 2 3 26 26 H 1.09004 * 109.47454 * 150.02733 * 1 2 3 27 27 H 1.07988 * 126.08335 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00114 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.46453 * 305.54324 * 8 6 5 30 30 H 1.09000 * 109.47223 * 65.53619 * 8 6 5 31 31 H 1.09004 * 109.47118 * 65.00002 * 10 9 8 32 32 H 1.09001 * 109.47114 * 185.00079 * 10 9 8 33 33 H 1.09003 * 109.47331 * 305.00220 * 10 9 8 34 34 H 1.09001 * 117.49797 * 0.02562 * 11 9 8 35 35 H 1.09003 * 117.49563 * 145.01964 * 11 9 8 36 36 H 1.09000 * 117.50366 * 252.51102 * 12 11 9 37 37 H 1.09005 * 117.49462 * 107.49036 * 12 11 9 38 38 H 1.08999 * 109.46839 * 30.00384 * 14 13 4 39 39 H 1.09005 * 109.46708 * 150.00104 * 14 13 4 40 40 H 0.97006 * 120.00208 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7120 0.0006 5 7 4.7513 1.5273 0.0003 6 6 4.6158 2.8683 -0.0002 7 8 3.5097 3.3661 -0.0007 8 6 5.8385 3.7493 -0.0011 9 6 5.4130 5.2123 0.1379 10 6 4.9305 5.8843 -1.1491 11 6 6.1751 6.0771 1.1441 12 6 4.7432 5.6319 1.4479 13 7 3.6092 -0.6406 0.0015 14 6 4.7870 -1.5118 0.0029 15 6 5.1918 -1.8115 -1.4175 16 1 4.6283 -1.3944 -2.2390 17 6 6.2821 -2.6174 -1.6681 18 7 6.6350 -2.8794 -2.9075 19 14 7.2571 -3.3382 -0.2470 20 1 6.6832 -4.6550 0.1295 21 1 8.6733 -3.5145 -0.6575 22 1 7.1899 -2.4180 0.9165 23 7 2.2730 -1.0608 -0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9902 2.1595 0.0004 28 1 5.6359 1.1293 0.0004 29 1 6.4829 3.4772 0.8350 30 1 6.3816 3.6161 -0.9367 31 1 4.0126 5.4036 -1.4878 32 1 4.7385 6.9401 -0.9578 33 1 5.6964 5.7878 -1.9186 34 1 6.9798 5.6038 1.7067 35 1 6.3329 7.1250 0.8891 36 1 3.9589 6.3869 1.3929 37 1 4.6056 4.8655 2.2108 38 1 5.6080 -1.0119 0.5170 39 1 4.5495 -2.4430 0.5172 40 1 7.4019 -3.4467 -3.0839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579546465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = 40.443696 kcal Electronic energy + Delta-G solvation = -21487.363647 eV Core-core repulsion = 18303.791827 eV Total energy + Delta-G solvation = -3183.571820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44362 -40.81060 -38.51900 -36.22595 -35.50994 -33.98515 -31.54326 -30.87756 -29.62247 -28.68468 -28.00941 -24.45248 -23.36256 -23.07259 -21.32207 -20.88606 -19.76347 -19.27279 -18.40684 -17.67783 -16.89795 -16.65046 -16.15682 -16.04795 -15.54085 -15.18329 -15.00215 -14.82435 -14.46675 -14.11536 -13.80190 -13.76781 -13.51101 -13.31477 -13.15099 -12.97713 -12.86314 -12.58316 -12.30810 -12.16351 -12.09072 -11.84856 -11.73548 -11.51103 -11.13174 -10.93677 -10.85799 -10.47881 -9.61499 -9.06045 -8.43370 -6.56177 0.80693 1.29385 1.36541 1.36796 1.46233 1.66254 2.06941 2.19963 2.23743 2.88432 2.92236 3.63069 3.75751 3.78475 3.88085 4.09288 4.15584 4.26147 4.45270 4.56084 4.57943 4.67893 4.69006 4.85866 4.87717 4.90586 4.94585 4.98440 5.03659 5.11478 5.13441 5.18032 5.18416 5.23024 5.32659 5.41768 5.86824 5.98975 6.23506 6.36300 6.48399 6.96168 7.06067 7.09788 8.73189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005522 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.907479 B = 5069.723072 C = 6479.522761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.308 4.308 4 C 0.304 3.696 5 N -0.644 5.644 6 C 0.516 3.484 7 O -0.529 6.529 8 C -0.094 4.094 9 C -0.126 4.126 10 C -0.113 4.113 11 C -0.150 4.150 12 C -0.172 4.172 13 N -0.368 5.368 14 C 0.238 3.762 15 C -0.554 4.554 16 H 0.021 0.979 17 C 0.025 3.975 18 N -0.935 5.935 19 Si 0.951 3.049 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.232 1.232 23 N -0.331 5.331 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.421 0.579 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 16.197 10.119 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.340 4.340 4 C 0.081 3.919 5 N -0.293 5.293 6 C 0.305 3.695 7 O -0.403 6.403 8 C -0.134 4.134 9 C -0.126 4.126 10 C -0.170 4.170 11 C -0.187 4.187 12 C -0.209 4.209 13 N -0.153 5.153 14 C 0.119 3.881 15 C -0.592 4.592 16 H 0.039 0.961 17 C -0.175 4.175 18 N -0.572 5.572 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.155 1.155 23 N -0.156 5.156 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.259 0.741 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.325 15.174 9.999 18.176 hybrid contribution 0.787 -0.316 -0.273 0.891 sum 1.112 14.859 9.727 17.794 Atomic orbital electron populations 1.20225 0.83975 1.03770 1.03965 1.22897 0.98750 0.90162 0.98828 1.21478 0.89166 1.00769 1.22603 1.18371 0.89863 0.82696 1.00944 1.43157 1.07304 1.06252 1.72575 1.21579 0.92978 0.80380 0.74537 1.90603 1.28296 1.73701 1.47727 1.21310 0.93568 0.91389 1.07087 1.21091 1.05897 0.92940 0.92689 1.21291 1.00657 0.99855 0.95161 1.23255 0.94586 1.00333 1.00540 1.22888 0.96588 1.03272 0.98156 1.48823 1.06062 1.02815 1.57649 1.19754 0.80555 0.90734 0.97101 1.21217 1.14055 1.32972 0.90960 0.96071 1.25829 0.97541 0.95107 0.99044 1.70033 1.27880 1.37634 1.21693 0.85678 0.77917 0.80000 0.79178 1.19401 1.19674 1.15461 1.77293 0.86341 1.23514 1.28430 0.88928 0.89022 0.91018 0.81492 0.74147 0.85857 0.86160 0.93939 0.91450 0.91464 0.87319 0.87365 0.89072 0.90077 0.91327 0.93225 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.38 7.21 43.07 0.31 2.69 16 3 C -0.31 -12.65 9.58 22.14 0.21 -12.44 16 4 C 0.30 12.76 7.66 131.31 1.01 13.77 16 5 N -0.64 -21.61 5.42 -308.55 -1.67 -23.28 16 6 C 0.52 15.19 7.65 87.66 0.67 15.86 16 7 O -0.53 -18.37 12.08 -3.09 -0.04 -18.41 16 8 C -0.09 -1.83 5.64 29.85 0.17 -1.66 16 9 C -0.13 -2.38 1.59 -52.18 -0.08 -2.47 16 10 C -0.11 -2.20 9.66 71.98 0.69 -1.50 16 11 C -0.15 -2.11 9.87 30.59 0.30 -1.81 16 12 C -0.17 -3.33 9.19 30.59 0.28 -3.05 16 13 N -0.37 -17.23 3.60 -348.70 -1.26 -18.49 16 14 C 0.24 11.15 5.07 85.63 0.43 11.59 16 15 C -0.55 -31.21 9.94 25.60 0.25 -30.95 16 16 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 17 C 0.03 1.37 5.47 84.65 0.46 1.84 16 18 N -0.93 -55.71 13.96 21.44 0.30 -55.41 16 19 Si 0.95 39.37 27.47 68.60 1.88 41.26 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.23 -8.27 6.54 99.48 0.65 -7.62 16 23 N -0.33 -15.60 12.57 -47.45 -0.60 -16.20 16 24 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.17 6.64 5.83 -2.92 -0.02 6.62 16 28 H 0.42 12.49 7.96 -92.71 -0.74 11.76 16 29 H 0.12 1.74 7.95 -2.38 -0.02 1.72 16 30 H 0.12 2.04 8.13 -2.39 -0.02 2.02 16 31 H 0.04 1.05 7.59 -2.38 -0.02 1.03 16 32 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.07 2.77 6.56 -2.39 -0.02 2.75 16 39 H 0.05 2.31 7.57 -2.38 -0.02 2.29 16 40 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -73.84 335.94 4.33 -69.51 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.25 Total: 30.14 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.46 Total: -9.13 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -3.22 Total: -113.37 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.04 Total: -18.41 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.88 Total: 41.26 kcal Total: -73.84 4.33 -69.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579546465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.954 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds