Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99873 * 2 1 4 4 N 1.46499 * 109.46938 * 124.99988 * 3 2 1 5 5 C 1.46494 * 120.00359 * 269.99908 * 4 3 2 6 6 C 1.50695 * 109.47335 * 270.00261 * 5 4 3 7 7 H 1.08003 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00276 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00077 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99833 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46803 * 90.00670 * 10 8 6 12 12 H 1.48502 * 109.47048 * 209.99898 * 10 8 6 13 13 H 1.48498 * 109.47296 * 330.00288 * 10 8 6 14 14 C 1.34782 * 119.99729 * 90.00130 * 4 3 2 15 15 O 1.21280 * 119.99919 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99858 * 359.97438 * 14 4 3 17 17 C 1.50698 * 109.46901 * 179.97438 * 16 14 4 18 18 C 1.35319 * 126.12548 * 85.29320 * 17 16 14 19 19 C 1.39869 * 107.92199 * 180.14715 * 18 17 16 20 20 C 1.50703 * 125.89994 * 179.86733 * 19 18 17 21 21 N 1.30834 * 108.20295 * 359.60194 * 19 18 17 22 22 N 1.34949 * 126.13332 * 265.00711 * 17 16 14 23 23 C 1.46499 * 126.03244 * 359.97438 * 22 17 16 24 24 H 1.07996 * 120.00129 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00136 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47155 * 5.00093 * 3 2 1 28 28 H 1.09002 * 109.47157 * 244.99985 * 3 2 1 29 29 H 1.09000 * 109.47207 * 29.99941 * 5 4 3 30 30 H 1.09001 * 109.47347 * 150.00104 * 5 4 3 31 31 H 0.96999 * 119.99674 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46918 * 60.00694 * 16 14 4 33 33 H 1.08988 * 109.47585 * 300.00145 * 16 14 4 34 34 H 1.08001 * 126.04319 * 0.03021 * 18 17 16 35 35 H 1.09002 * 109.47152 * 269.71476 * 20 19 18 36 36 H 1.09001 * 109.46980 * 149.71576 * 20 19 18 37 37 H 1.09004 * 109.47113 * 29.71557 * 20 19 18 38 38 H 1.08992 * 109.47808 * 269.98164 * 23 22 17 39 39 H 1.09003 * 109.47286 * 29.98436 * 23 22 17 40 40 H 1.09002 * 109.46991 * 149.97561 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3040 3.8369 1.6368 8 6 2.5195 4.0665 3.6087 9 7 2.7690 5.3568 3.6573 10 14 1.7250 3.2130 5.0681 11 1 2.7811 2.7220 5.9894 12 1 0.8490 4.1733 5.7863 13 1 0.9133 2.0656 4.5888 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6969 0.3174 -0.3481 17 6 6.1315 -0.1331 -0.2490 18 6 6.5604 -1.3400 0.1875 19 6 7.9576 -1.3489 0.1245 20 6 8.8527 -2.4953 0.5190 21 7 8.3531 -0.1921 -0.3415 22 7 7.2185 0.5927 -0.5848 23 6 7.2129 1.9598 -1.1114 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.4888 1.6967 2.5460 30 1 3.0990 1.3603 3.2259 31 1 2.5401 5.8654 4.4510 32 1 4.6120 1.0939 -1.1084 33 1 4.0678 -0.5295 -0.6218 34 1 5.9345 -2.1522 0.5267 35 1 9.1182 -2.4032 1.5722 36 1 9.7584 -2.4744 -0.0872 37 1 8.3289 -3.4375 0.3574 38 1 7.1624 1.9298 -2.1998 39 1 6.3471 2.4956 -0.7222 40 1 8.1249 2.4714 -0.8039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580434256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = 64.536039 kcal Electronic energy + Delta-G solvation = -21575.186275 eV Core-core repulsion = 18392.659178 eV Total energy + Delta-G solvation = -3182.527098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15241 -39.12854 -35.84103 -33.96483 -33.27497 -32.24999 -31.89020 -29.52627 -28.71209 -27.03677 -25.55498 -25.21591 -22.51744 -20.41582 -20.01650 -19.38839 -18.35972 -16.96584 -16.66820 -16.48824 -15.57571 -15.19411 -15.01743 -14.47373 -14.14852 -13.68879 -13.64373 -13.43162 -13.14160 -12.93869 -12.82944 -12.41024 -12.27982 -12.14063 -11.92525 -11.83016 -11.68053 -11.60212 -11.18018 -10.98969 -10.56215 -10.35894 -10.18294 -9.61894 -9.33497 -9.25403 -8.80800 -8.62498 -8.25825 -7.82900 -6.12958 -4.11982 2.01602 2.30382 2.68602 2.95390 3.22277 3.27031 3.33076 3.35422 3.85306 4.36562 4.59484 4.65915 4.91799 5.01007 5.15352 5.21654 5.22457 5.25129 5.27581 5.35101 5.43527 5.53553 5.59898 5.66008 5.78037 5.88696 5.95168 6.00903 6.05888 6.36640 6.64108 6.65736 6.78494 6.88420 6.90382 7.19058 7.27509 7.56679 7.93384 8.13551 8.41477 8.84733 8.90530 9.47472 11.00296 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.005208 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.655585 B = 5374.790630 C = 6095.050678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 C 0.134 3.866 4 N -0.588 5.588 5 C 0.218 3.782 6 C -0.530 4.530 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.510 3.490 15 O -0.524 6.524 16 C -0.083 4.083 17 C 0.116 3.884 18 C -0.261 4.261 19 C 0.069 3.931 20 C -0.069 4.069 21 N -0.300 5.300 22 N -0.365 5.365 23 C 0.099 3.901 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -13.023 -11.821 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.191 4.191 3 C 0.011 3.989 4 N -0.319 5.319 5 C 0.098 3.902 6 C -0.568 4.568 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.295 3.705 15 O -0.400 6.400 16 C -0.125 4.125 17 C -0.012 4.012 18 C -0.290 4.290 19 C -0.097 4.097 20 C -0.127 4.127 21 N -0.123 5.123 22 N -0.147 5.147 23 C -0.042 4.042 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.894 -11.944 -11.563 16.874 hybrid contribution -1.293 -0.579 1.040 1.758 sum 1.601 -12.523 -10.523 16.435 Atomic orbital electron populations 1.23857 0.95862 1.01896 1.00257 1.23444 0.96451 0.99019 1.00179 1.20641 0.93199 0.95545 0.89539 1.47891 1.10492 1.60457 1.13106 1.19660 0.94950 0.95123 0.80512 1.21299 1.41316 0.91112 1.03090 0.90823 1.24839 0.95225 0.94713 0.98120 1.69891 1.47708 1.06622 1.29312 0.86868 0.79901 0.79700 0.83368 1.19898 1.21021 1.18984 1.20038 0.82351 0.78906 0.89226 1.90733 1.52271 1.55400 1.41610 1.20402 0.90815 1.03003 0.98236 1.20321 0.89294 0.92106 0.99447 1.20963 0.94373 0.99088 1.14574 1.22190 0.94038 0.94418 0.99021 1.20128 0.97585 0.93252 1.01760 1.77223 1.07554 1.03823 1.23740 1.48261 1.03263 1.12744 1.50430 1.21852 1.05106 0.78375 0.98871 0.88672 0.88196 0.87590 0.89071 0.90494 0.95105 0.94581 0.92527 0.88202 0.86835 0.83979 0.90672 0.91265 0.90667 0.90917 0.89318 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.17 -2.11 9.74 -36.02 -0.35 -2.46 16 3 C 0.13 1.94 5.65 -5.19 -0.03 1.91 16 4 N -0.59 -11.46 2.44 -176.44 -0.43 -11.89 16 5 C 0.22 5.22 4.23 -5.20 -0.02 5.19 16 6 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 7 H 0.07 2.25 8.06 -52.48 -0.42 1.83 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 10 Si 0.87 21.48 27.47 -169.99 -4.67 16.82 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.51 9.96 7.66 -10.98 -0.08 9.87 16 15 O -0.52 -12.93 15.61 5.56 0.09 -12.84 16 16 C -0.08 -1.16 4.36 -29.03 -0.13 -1.29 16 17 C 0.12 1.87 5.42 -82.26 -0.45 1.43 16 18 C -0.26 -4.10 10.65 -40.01 -0.43 -4.52 16 19 C 0.07 1.07 7.22 -82.41 -0.59 0.47 16 20 C -0.07 -0.76 10.45 36.01 0.38 -0.38 16 21 N -0.30 -5.18 12.58 33.67 0.42 -4.76 16 22 N -0.37 -5.98 4.01 -63.89 -0.26 -6.23 16 23 C 0.10 1.27 11.06 59.85 0.66 1.93 16 24 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 25 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 26 H 0.11 1.19 7.83 -52.49 -0.41 0.78 16 27 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 28 H 0.08 0.89 6.44 -51.93 -0.33 0.55 16 29 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.10 1.16 6.75 -51.93 -0.35 0.81 16 33 H 0.11 1.25 7.77 -51.94 -0.40 0.85 16 34 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.16 7.54 -51.93 -0.39 0.77 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -36.38 342.06 -5.96 -42.34 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.98 Total: 0.67 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.07 Total: -2.67 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.51 Total: -49.47 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.38 -5.96 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580434256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.880 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds