Wall clock time and date at job start Mon Mar 30 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99873 * 2 1 4 4 N 1.46499 * 109.46938 * 124.99988 * 3 2 1 5 5 C 1.46494 * 120.00359 * 269.99908 * 4 3 2 6 6 C 1.50695 * 109.47335 * 270.00261 * 5 4 3 7 7 H 1.08003 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00276 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00077 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99833 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46803 * 90.00670 * 10 8 6 12 12 H 1.48502 * 109.47048 * 209.99898 * 10 8 6 13 13 H 1.48498 * 109.47296 * 330.00288 * 10 8 6 14 14 C 1.34782 * 119.99729 * 90.00130 * 4 3 2 15 15 O 1.21280 * 119.99919 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99858 * 359.97438 * 14 4 3 17 17 C 1.50698 * 109.46901 * 179.97438 * 16 14 4 18 18 C 1.35319 * 126.12548 * 85.29320 * 17 16 14 19 19 C 1.39869 * 107.92199 * 180.14715 * 18 17 16 20 20 C 1.50703 * 125.89994 * 179.86733 * 19 18 17 21 21 N 1.30834 * 108.20295 * 359.60194 * 19 18 17 22 22 N 1.34949 * 126.13332 * 265.00711 * 17 16 14 23 23 C 1.46499 * 126.03244 * 359.97438 * 22 17 16 24 24 H 1.07996 * 120.00129 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99909 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00136 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47155 * 5.00093 * 3 2 1 28 28 H 1.09002 * 109.47157 * 244.99985 * 3 2 1 29 29 H 1.09000 * 109.47207 * 29.99941 * 5 4 3 30 30 H 1.09001 * 109.47347 * 150.00104 * 5 4 3 31 31 H 0.96999 * 119.99674 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46918 * 60.00694 * 16 14 4 33 33 H 1.08988 * 109.47585 * 300.00145 * 16 14 4 34 34 H 1.08001 * 126.04319 * 0.03021 * 18 17 16 35 35 H 1.09002 * 109.47152 * 269.71476 * 20 19 18 36 36 H 1.09001 * 109.46980 * 149.71576 * 20 19 18 37 37 H 1.09004 * 109.47113 * 29.71557 * 20 19 18 38 38 H 1.08992 * 109.47808 * 269.98164 * 23 22 17 39 39 H 1.09003 * 109.47286 * 29.98436 * 23 22 17 40 40 H 1.09002 * 109.46991 * 149.97561 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3040 3.8369 1.6368 8 6 2.5195 4.0665 3.6087 9 7 2.7690 5.3568 3.6573 10 14 1.7250 3.2130 5.0681 11 1 2.7811 2.7220 5.9894 12 1 0.8490 4.1733 5.7863 13 1 0.9133 2.0656 4.5888 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6969 0.3174 -0.3481 17 6 6.1315 -0.1331 -0.2490 18 6 6.5604 -1.3400 0.1875 19 6 7.9576 -1.3489 0.1245 20 6 8.8527 -2.4953 0.5190 21 7 8.3531 -0.1921 -0.3415 22 7 7.2185 0.5927 -0.5848 23 6 7.2129 1.9598 -1.1114 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.4888 1.6967 2.5460 30 1 3.0990 1.3603 3.2259 31 1 2.5401 5.8654 4.4510 32 1 4.6120 1.0939 -1.1084 33 1 4.0678 -0.5295 -0.6218 34 1 5.9345 -2.1522 0.5267 35 1 9.1182 -2.4032 1.5722 36 1 9.7584 -2.4744 -0.0872 37 1 8.3289 -3.4375 0.3574 38 1 7.1624 1.9298 -2.1998 39 1 6.3471 2.4956 -0.7222 40 1 8.1249 2.4714 -0.8039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580434256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:41 Heat of formation + Delta-G solvation = 39.845190 kcal Electronic energy + Delta-G solvation = -21576.256951 eV Core-core repulsion = 18392.659178 eV Total energy + Delta-G solvation = -3183.597773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32164 -40.63659 -37.27530 -35.20315 -34.94088 -33.73809 -33.21297 -30.67803 -30.24049 -28.39697 -26.86176 -26.26861 -24.40398 -21.64410 -21.08596 -20.58078 -19.69099 -19.09626 -18.05142 -17.74173 -17.03230 -16.50113 -16.35035 -15.94436 -15.52994 -14.94761 -14.93736 -14.57887 -14.34458 -14.32526 -14.15504 -13.86356 -13.54741 -13.36730 -13.18409 -13.02526 -12.91814 -12.87106 -12.70527 -12.51047 -12.21911 -11.93850 -11.74407 -11.51227 -10.85462 -10.82145 -10.28624 -10.02690 -9.46492 -9.41893 -8.35529 -6.39868 0.82135 1.30154 1.34849 1.36638 1.43104 1.61643 1.73051 1.81660 2.29219 2.46227 2.99574 3.43402 3.60795 3.73380 3.98561 4.11836 4.21357 4.27048 4.33739 4.40613 4.44908 4.51924 4.58804 4.72945 4.77906 4.83717 4.88721 4.93055 4.95239 5.07242 5.11579 5.28016 5.44831 5.52116 5.76869 5.80647 5.95538 6.07519 6.22241 6.61115 6.64840 6.77279 7.20360 7.37821 8.81098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.005208 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.655585 B = 5374.790630 C = 6095.050678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.228 3.772 6 C -0.533 4.533 7 H 0.033 0.967 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.274 1.274 13 H -0.237 1.237 14 C 0.505 3.495 15 O -0.586 6.586 16 C -0.067 4.067 17 C 0.101 3.899 18 C -0.275 4.275 19 C 0.059 3.941 20 C -0.067 4.067 21 N -0.335 5.335 22 N -0.378 5.378 23 C 0.093 3.907 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.127 0.873 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -15.467 -12.814 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.007 3.993 4 N -0.322 5.322 5 C 0.106 3.894 6 C -0.572 4.572 7 H 0.051 0.949 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.206 1.206 12 H -0.200 1.200 13 H -0.161 1.161 14 C 0.293 3.707 15 O -0.467 6.467 16 C -0.108 4.108 17 C -0.028 4.028 18 C -0.304 4.304 19 C -0.106 4.106 20 C -0.125 4.125 21 N -0.158 5.158 22 N -0.160 5.160 23 C -0.047 4.047 24 H 0.135 0.865 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.357 -14.400 -12.620 19.196 hybrid contribution -0.807 0.241 1.279 1.532 sum 0.550 -14.160 -11.341 18.150 Atomic orbital electron populations 1.24077 0.95657 1.02883 0.98210 1.23333 0.96703 0.98200 1.01923 1.20927 0.92771 0.96706 0.88910 1.47943 1.11624 1.59730 1.12917 1.19265 0.95391 0.92094 0.82676 1.21552 1.40380 0.93405 1.01827 0.94878 1.25783 0.95991 0.95320 1.01385 1.70038 1.49476 1.08439 1.30481 0.85802 0.79079 0.79495 0.79135 1.20587 1.19952 1.16053 1.20935 0.81494 0.77773 0.90522 1.90702 1.53856 1.57951 1.44149 1.20409 0.90209 1.04979 0.95172 1.20702 0.90030 0.92453 0.99603 1.21355 0.94857 0.99731 1.14491 1.22900 0.94857 0.94843 0.98016 1.20277 0.97569 0.92791 1.01901 1.77165 1.08620 1.04858 1.25205 1.48571 1.03257 1.13533 1.50648 1.22045 1.04656 0.77204 1.00834 0.86499 0.88458 0.85967 0.90408 0.87292 0.93440 0.96739 0.92328 0.85486 0.82915 0.82275 0.90404 0.90399 0.88149 0.87590 0.90097 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 14.32 67.78 0.97 -2.26 16 2 C -0.18 -3.85 9.74 25.65 0.25 -3.60 16 3 C 0.13 3.43 5.65 85.64 0.48 3.91 16 4 N -0.59 -22.51 2.44 -830.51 -2.03 -24.53 16 5 C 0.23 10.87 4.23 85.63 0.36 11.23 16 6 C -0.53 -30.75 9.94 25.60 0.25 -30.49 16 7 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 8 C 0.01 0.78 5.47 84.65 0.46 1.25 16 9 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 10 Si 0.94 44.38 27.47 68.60 1.88 46.27 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 C 0.50 19.38 7.66 87.66 0.67 20.05 16 15 O -0.59 -29.48 15.61 -3.03 -0.05 -29.52 16 16 C -0.07 -1.72 4.36 29.10 0.13 -1.59 16 17 C 0.10 3.10 5.42 41.41 0.22 3.33 16 18 C -0.28 -8.27 10.65 21.99 0.23 -8.04 16 19 C 0.06 1.78 7.22 43.10 0.31 2.09 16 20 C -0.07 -1.37 10.45 71.24 0.74 -0.63 16 21 N -0.33 -11.48 12.58 -47.38 -0.60 -12.08 16 22 N -0.38 -12.19 4.01 -356.03 -1.43 -13.61 16 23 C 0.09 2.34 11.06 127.77 1.41 3.76 16 24 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 25 H 0.10 1.89 7.84 -2.91 -0.02 1.87 16 26 H 0.12 2.21 7.83 -2.91 -0.02 2.19 16 27 H 0.08 2.28 7.72 -2.39 -0.02 2.26 16 28 H 0.11 2.16 6.44 -2.39 -0.02 2.14 16 29 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 30 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.13 2.57 6.75 -2.39 -0.02 2.55 16 33 H 0.15 2.72 7.77 -2.39 -0.02 2.70 16 34 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 2.12 7.54 -2.39 -0.02 2.11 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -82.93 342.06 5.56 -77.37 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.96 Total: 16.06 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.51 Total: -1.00 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.75 Total: -109.18 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.52 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -82.93 5.56 -77.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580434256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.218 kcal (2) G-P(sol) polarization free energy of solvation -82.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds