Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34952 * 126.03669 * 2 1 4 4 C 1.35317 * 107.74829 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04194 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.30555 * 13.11201 * 5 4 3 7 7 C 1.54381 * 110.34688 * 135.28508 * 5 4 3 8 8 N 1.48148 * 104.61663 * 95.10838 * 7 5 4 9 9 C 1.34776 * 127.83557 * 219.58624 * 8 7 5 10 10 O 1.21695 * 119.99752 * 180.02562 * 9 8 7 11 11 C 1.46372 * 120.00513 * 0.02562 * 9 8 7 12 12 H 1.08006 * 120.00018 * 359.97438 * 11 9 8 13 13 C 1.40049 * 120.00232 * 179.97438 * 11 9 8 14 14 N 1.30665 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99958 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46860 * 90.00240 * 15 13 11 17 17 H 1.48501 * 109.47383 * 209.99979 * 15 13 11 18 18 H 1.48492 * 109.47341 * 330.00359 * 15 13 11 19 19 C 1.48138 * 104.32280 * 39.59021 * 8 7 5 20 20 C 1.54385 * 104.72144 * 320.35359 * 19 8 7 21 21 C 1.53005 * 110.34413 * 142.79997 * 20 19 8 22 22 C 1.52998 * 110.34374 * 265.05845 * 20 19 8 23 23 C 1.39864 * 107.91626 * 0.25759 * 4 3 2 24 24 N 1.30834 * 108.20668 * 359.55899 * 23 4 3 25 25 H 1.09001 * 109.47386 * 90.00062 * 1 2 3 26 26 H 1.09000 * 109.47098 * 210.00477 * 1 2 3 27 27 H 1.09000 * 109.47373 * 330.00480 * 1 2 3 28 28 H 1.08008 * 126.12400 * 359.95279 * 3 2 1 29 29 H 1.09001 * 110.40501 * 336.32728 * 7 5 4 30 30 H 1.08994 * 110.41111 * 213.89578 * 7 5 4 31 31 H 0.97004 * 120.00271 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.41043 * 79.19993 * 19 8 7 33 33 H 1.09007 * 110.40791 * 201.51559 * 19 8 7 34 34 H 1.08993 * 109.46779 * 61.45328 * 21 20 19 35 35 H 1.09000 * 109.46882 * 181.45634 * 21 20 19 36 36 H 1.08997 * 109.46303 * 301.45342 * 21 20 19 37 37 H 1.08997 * 109.47580 * 52.88467 * 22 20 19 38 38 H 1.09009 * 109.47647 * 172.89073 * 22 20 19 39 39 H 1.09002 * 109.47166 * 292.88356 * 22 20 19 40 40 H 1.08009 * 125.90039 * 179.73650 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5454 0.0013 6 1 4.4945 2.5748 0.2333 7 6 5.8033 1.0226 1.0202 8 7 6.7191 0.1754 0.2213 9 6 7.2740 -1.0016 0.5724 10 8 8.0128 -1.5809 -0.2019 11 6 6.9879 -1.5831 1.8848 12 1 6.3325 -1.0687 2.5721 13 6 7.5641 -2.8064 2.2494 14 7 8.3574 -3.4284 1.4181 15 14 7.1995 -3.5481 3.9246 16 1 6.0036 -4.4232 3.8288 17 1 8.3651 -4.3504 4.3751 18 1 6.9399 -2.4604 4.9017 19 6 6.8868 0.9156 -1.0510 20 6 5.4830 1.4748 -1.3674 21 6 5.5932 2.8702 -1.9854 22 6 4.7350 0.5313 -2.3115 23 6 3.5346 -0.7319 -0.0050 24 7 2.2891 -1.1327 0.0007 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9280 2.1194 -0.0007 29 1 5.3117 0.4289 1.7909 30 1 6.3481 1.8532 1.4687 31 1 8.7562 -4.2759 1.6704 32 1 7.6009 1.7296 -0.9259 33 1 7.2147 0.2416 -1.8425 34 1 6.1478 2.8100 -2.9217 35 1 4.5945 3.2616 -2.1791 36 1 6.1156 3.5327 -1.2954 37 1 4.7405 -0.4768 -1.8972 38 1 3.7058 0.8718 -2.4253 39 1 5.2258 0.5268 -3.2847 40 1 4.4054 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584003889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 46.226660 kcal Electronic energy + Delta-G solvation = -22536.497219 eV Core-core repulsion = 19353.176167 eV Total energy + Delta-G solvation = -3183.321052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12940 -38.77585 -36.14596 -33.06433 -32.61724 -32.29593 -30.77468 -28.18990 -27.28889 -26.95987 -25.59987 -24.62680 -22.55350 -20.69311 -20.12118 -19.17387 -18.35025 -16.52519 -16.35730 -15.44211 -15.27094 -14.89050 -14.36917 -14.02372 -13.79954 -13.63279 -13.28239 -12.96852 -12.66309 -12.56956 -12.43454 -12.35963 -11.83305 -11.71848 -11.39923 -11.19131 -11.06554 -10.96569 -10.85653 -10.59796 -10.36810 -10.26728 -10.10011 -9.98959 -9.90804 -9.03621 -8.81194 -7.98983 -7.57797 -7.13680 -6.15460 -4.59123 2.17345 2.79031 3.17828 3.19696 3.24703 3.27580 4.13001 4.59169 4.64948 4.67868 4.97030 5.04845 5.11371 5.19252 5.22669 5.33999 5.54381 5.65685 5.75191 5.79552 5.87618 5.92593 5.93704 6.06821 6.13969 6.20323 6.30021 6.41931 6.49715 6.54169 6.63799 6.65421 6.77889 6.83863 7.09343 7.28143 7.39618 7.49250 8.06581 8.16838 8.49248 9.07250 9.59894 10.62754 10.82238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.006978 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.391803 B = 4011.368020 C = 5232.565354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.389 5.389 3 C 0.039 3.961 4 C -0.204 4.204 5 C -0.019 4.019 6 H 0.077 0.923 7 C 0.122 3.878 8 N -0.641 5.641 9 C 0.577 3.423 10 O -0.577 6.577 11 C -0.537 4.537 12 H 0.069 0.931 13 C 0.089 3.911 14 N -0.768 5.768 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.118 3.882 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.125 4.125 23 C 0.079 3.921 24 N -0.304 5.304 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.166 0.834 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.268 0.732 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 12.003 -2.577 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.172 5.172 3 C -0.105 4.105 4 C -0.215 4.215 5 C -0.040 4.040 6 H 0.096 0.904 7 C -0.004 4.004 8 N -0.380 5.380 9 C 0.384 3.616 10 O -0.459 6.459 11 C -0.574 4.574 12 H 0.087 0.913 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.728 3.272 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.007 4.007 20 C -0.073 4.073 21 C -0.189 4.189 22 C -0.183 4.183 23 C -0.108 4.108 24 N -0.125 5.125 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.183 0.817 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.869 10.371 -2.999 17.576 hybrid contribution 0.201 0.467 0.871 1.009 sum -13.668 10.838 -2.127 17.573 Atomic orbital electron populations 1.21693 0.75126 1.03915 1.02683 1.48365 1.06123 1.04091 1.58627 1.22149 0.90948 0.92927 1.04518 1.19881 0.93495 0.94055 1.14107 1.20611 0.91443 0.96674 0.95260 0.90432 1.22028 0.90225 0.94058 0.94044 1.49196 1.51191 1.22402 1.15250 1.17972 0.79111 0.76572 0.87948 1.90621 1.40237 1.60638 1.54420 1.20856 1.30828 1.05875 0.99810 0.91306 1.25690 0.93298 0.96429 0.97665 1.70017 1.22349 1.13054 1.34266 0.86429 0.78471 0.79484 0.82772 1.19705 1.20482 1.18922 1.22003 0.93745 0.95077 0.89837 1.21569 0.96092 0.95080 0.94578 1.21805 1.01047 0.95653 1.00442 1.21855 0.98656 1.00000 0.97743 1.24032 0.94807 0.95009 0.96924 1.77414 1.01972 1.07745 1.25354 0.91421 0.89707 0.90078 0.81698 0.90440 0.93362 0.92138 0.93629 0.91226 0.92803 0.93041 0.92659 0.91828 0.93473 0.93771 0.79539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.94 11.47 59.84 0.69 1.63 16 2 N -0.39 -5.38 4.01 -68.16 -0.27 -5.66 16 3 C 0.04 0.51 11.37 -17.22 -0.20 0.31 16 4 C -0.20 -3.16 3.15 -105.06 -0.33 -3.49 16 5 C -0.02 -0.28 3.14 -90.21 -0.28 -0.57 16 6 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 7 C 0.12 2.22 6.09 -2.41 -0.01 2.20 16 8 N -0.64 -14.46 3.32 -170.97 -0.57 -15.03 16 9 C 0.58 16.39 7.84 -12.99 -0.10 16.29 16 10 O -0.58 -18.82 15.29 5.19 0.08 -18.74 16 11 C -0.54 -15.10 9.07 -35.63 -0.32 -15.43 16 12 H 0.07 1.81 6.50 -52.48 -0.34 1.46 16 13 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 14 N -0.77 -23.15 11.83 55.55 0.66 -22.49 16 15 Si 0.90 20.52 29.56 -169.99 -5.02 15.49 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C 0.12 2.26 6.13 -2.41 -0.01 2.24 16 20 C -0.07 -1.08 1.04 -152.94 -0.16 -1.24 16 21 C -0.13 -1.56 8.26 37.16 0.31 -1.25 16 22 C -0.13 -1.97 7.16 37.16 0.27 -1.70 16 23 C 0.08 1.47 9.18 -17.37 -0.16 1.31 16 24 N -0.30 -5.47 12.58 30.62 0.39 -5.09 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.17 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.08 1.52 6.27 -51.93 -0.33 1.19 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 32 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 33 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.19 5.85 -51.93 -0.30 0.88 16 38 H 0.05 0.69 7.39 -51.92 -0.38 0.31 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.19 4.07 7.83 -52.48 -0.41 3.66 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -35.46 325.80 -6.16 -41.62 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.91 Total: 2.28 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.42 Total: 2.70 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.20 Total: -48.26 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.46 -6.16 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.846 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds