Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34952 * 126.03669 * 2 1 4 4 C 1.35317 * 107.74829 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.04194 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.30555 * 13.11201 * 5 4 3 7 7 C 1.54381 * 110.34688 * 135.28508 * 5 4 3 8 8 N 1.48148 * 104.61663 * 95.10838 * 7 5 4 9 9 C 1.34776 * 127.83557 * 219.58624 * 8 7 5 10 10 O 1.21695 * 119.99752 * 180.02562 * 9 8 7 11 11 C 1.46372 * 120.00513 * 0.02562 * 9 8 7 12 12 H 1.08006 * 120.00018 * 359.97438 * 11 9 8 13 13 C 1.40049 * 120.00232 * 179.97438 * 11 9 8 14 14 N 1.30665 * 119.99950 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99958 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46860 * 90.00240 * 15 13 11 17 17 H 1.48501 * 109.47383 * 209.99979 * 15 13 11 18 18 H 1.48492 * 109.47341 * 330.00359 * 15 13 11 19 19 C 1.48138 * 104.32280 * 39.59021 * 8 7 5 20 20 C 1.54385 * 104.72144 * 320.35359 * 19 8 7 21 21 C 1.53005 * 110.34413 * 142.79997 * 20 19 8 22 22 C 1.52998 * 110.34374 * 265.05845 * 20 19 8 23 23 C 1.39864 * 107.91626 * 0.25759 * 4 3 2 24 24 N 1.30834 * 108.20668 * 359.55899 * 23 4 3 25 25 H 1.09001 * 109.47386 * 90.00062 * 1 2 3 26 26 H 1.09000 * 109.47098 * 210.00477 * 1 2 3 27 27 H 1.09000 * 109.47373 * 330.00480 * 1 2 3 28 28 H 1.08008 * 126.12400 * 359.95279 * 3 2 1 29 29 H 1.09001 * 110.40501 * 336.32728 * 7 5 4 30 30 H 1.08994 * 110.41111 * 213.89578 * 7 5 4 31 31 H 0.97004 * 120.00271 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.41043 * 79.19993 * 19 8 7 33 33 H 1.09007 * 110.40791 * 201.51559 * 19 8 7 34 34 H 1.08993 * 109.46779 * 61.45328 * 21 20 19 35 35 H 1.09000 * 109.46882 * 181.45634 * 21 20 19 36 36 H 1.08997 * 109.46303 * 301.45342 * 21 20 19 37 37 H 1.08997 * 109.47580 * 52.88467 * 22 20 19 38 38 H 1.09009 * 109.47647 * 172.89073 * 22 20 19 39 39 H 1.09002 * 109.47166 * 292.88356 * 22 20 19 40 40 H 1.08009 * 125.90039 * 179.73650 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5454 0.0013 6 1 4.4945 2.5748 0.2333 7 6 5.8033 1.0226 1.0202 8 7 6.7191 0.1754 0.2213 9 6 7.2740 -1.0016 0.5724 10 8 8.0128 -1.5809 -0.2019 11 6 6.9879 -1.5831 1.8848 12 1 6.3325 -1.0687 2.5721 13 6 7.5641 -2.8064 2.2494 14 7 8.3574 -3.4284 1.4181 15 14 7.1995 -3.5481 3.9246 16 1 6.0036 -4.4232 3.8288 17 1 8.3651 -4.3504 4.3751 18 1 6.9399 -2.4604 4.9017 19 6 6.8868 0.9156 -1.0510 20 6 5.4830 1.4748 -1.3674 21 6 5.5932 2.8702 -1.9854 22 6 4.7350 0.5313 -2.3115 23 6 3.5346 -0.7319 -0.0050 24 7 2.2891 -1.1327 0.0007 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9280 2.1194 -0.0007 29 1 5.3117 0.4289 1.7909 30 1 6.3481 1.8532 1.4687 31 1 8.7562 -4.2759 1.6704 32 1 7.6009 1.7296 -0.9259 33 1 7.2147 0.2416 -1.8425 34 1 6.1478 2.8100 -2.9217 35 1 4.5945 3.2616 -2.1791 36 1 6.1156 3.5327 -1.2954 37 1 4.7405 -0.4768 -1.8972 38 1 3.7058 0.8718 -2.4253 39 1 5.2258 0.5268 -3.2847 40 1 4.4054 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584003889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = 20.833165 kcal Electronic energy + Delta-G solvation = -22537.598364 eV Core-core repulsion = 19353.176167 eV Total energy + Delta-G solvation = -3184.422197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31808 -40.27815 -38.14474 -34.70100 -34.18148 -33.94948 -32.04064 -29.43099 -28.97589 -28.35058 -26.69949 -26.35196 -24.01320 -21.84328 -21.45261 -20.98273 -19.66301 -18.35989 -17.71889 -17.35943 -16.43604 -16.15311 -16.06883 -15.49132 -15.37842 -14.82895 -14.55867 -14.40177 -14.17780 -13.84394 -13.51200 -13.42984 -13.35463 -13.09021 -13.01214 -12.80607 -12.63448 -12.54593 -12.40799 -12.24569 -12.02930 -11.71205 -11.48324 -11.40667 -11.14662 -10.94616 -10.19631 -9.82862 -9.24535 -8.90305 -8.29254 -6.81996 1.07816 1.35165 1.37280 1.51479 1.84317 1.91803 2.21562 2.46941 2.95363 3.58620 3.66642 3.78482 3.96589 4.11410 4.17702 4.39205 4.49043 4.51660 4.53681 4.60257 4.67996 4.75297 4.80953 4.90059 4.94209 4.97659 5.01185 5.11928 5.17385 5.24850 5.33868 5.35290 5.39968 5.49487 5.54150 5.75168 5.80588 6.07433 6.34800 6.47730 6.86042 6.88357 7.58829 8.49710 8.69399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.006978 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.391803 B = 4011.368020 C = 5232.565354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.381 5.381 3 C 0.070 3.930 4 C -0.226 4.226 5 C -0.005 4.005 6 H 0.126 0.874 7 C 0.117 3.883 8 N -0.648 5.648 9 C 0.563 3.437 10 O -0.637 6.637 11 C -0.559 4.559 12 H 0.081 0.919 13 C 0.031 3.969 14 N -0.822 5.822 15 Si 0.989 3.011 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.248 1.248 19 C 0.112 3.888 20 C -0.060 4.060 21 C -0.124 4.124 22 C -0.117 4.117 23 C 0.056 3.944 24 N -0.347 5.347 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.222 0.778 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.273 0.727 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 15.754 -1.430 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.164 5.164 3 C -0.076 4.076 4 C -0.237 4.237 5 C -0.025 4.025 6 H 0.144 0.856 7 C -0.007 4.007 8 N -0.385 5.385 9 C 0.370 3.630 10 O -0.525 6.525 11 C -0.595 4.595 12 H 0.099 0.901 13 C -0.184 4.184 14 N -0.452 5.452 15 Si 0.808 3.192 16 H -0.191 1.191 17 H -0.194 1.194 18 H -0.171 1.171 19 C -0.012 4.012 20 C -0.061 4.061 21 C -0.182 4.182 22 C -0.174 4.174 23 C -0.129 4.129 24 N -0.170 5.170 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.239 0.761 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.130 14.178 -1.854 22.314 hybrid contribution 1.078 -0.657 0.439 1.337 sum -16.052 13.521 -1.415 21.035 Atomic orbital electron populations 1.22156 0.72032 1.05796 1.04407 1.48775 1.07781 1.03284 1.56553 1.22858 0.89350 0.94668 1.00729 1.19929 0.95220 0.92345 1.16196 1.20595 0.89933 0.98680 0.93264 0.85572 1.22292 0.90538 0.93443 0.94413 1.48911 1.50788 1.21503 1.17287 1.18217 0.78841 0.78049 0.87901 1.90554 1.42975 1.63042 1.55906 1.21279 1.31212 1.06749 1.00278 0.90078 1.26903 0.92455 0.96607 1.02453 1.70193 1.24000 1.13853 1.37182 0.85151 0.78518 0.78768 0.76727 1.19135 1.19366 1.17112 1.22259 0.97344 0.94306 0.87288 1.21519 0.92659 0.96858 0.95100 1.21768 1.03107 0.92819 1.00475 1.21765 0.99903 0.98062 0.97702 1.23434 0.93838 0.96417 0.99205 1.77305 1.02264 1.10383 1.27020 0.89730 0.90136 0.85968 0.76121 0.92445 0.91194 0.91698 0.92039 0.94965 0.92740 0.90142 0.91148 0.96052 0.91608 0.93642 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.29 11.47 127.77 1.47 2.75 16 2 N -0.38 -9.40 4.01 -369.57 -1.48 -10.89 16 3 C 0.07 1.48 11.37 83.54 0.95 2.43 16 4 C -0.23 -6.55 3.15 -20.15 -0.06 -6.61 16 5 C 0.00 -0.12 3.14 -10.53 -0.03 -0.16 16 6 H 0.13 2.26 7.72 -2.38 -0.02 2.24 16 7 C 0.12 4.21 6.09 86.53 0.53 4.73 16 8 N -0.65 -30.71 3.32 -813.05 -2.70 -33.40 16 9 C 0.56 34.35 7.84 86.36 0.68 35.03 16 10 O -0.64 -45.12 15.29 -4.33 -0.07 -45.18 16 11 C -0.56 -33.15 9.07 24.83 0.23 -32.93 16 12 H 0.08 4.43 6.50 -2.91 -0.02 4.41 16 13 C 0.03 1.79 5.50 85.31 0.47 2.26 16 14 N -0.82 -52.58 11.83 21.83 0.26 -52.32 16 15 Si 0.99 43.43 29.56 68.60 2.03 45.46 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 19 C 0.11 4.42 6.13 86.53 0.53 4.95 16 20 C -0.06 -1.71 1.04 -51.17 -0.05 -1.77 16 21 C -0.12 -2.38 8.26 71.98 0.59 -1.79 16 22 C -0.12 -3.68 7.16 71.98 0.52 -3.16 16 23 C 0.06 2.18 9.18 85.24 0.78 2.96 16 24 N -0.35 -12.66 12.58 -57.02 -0.72 -13.38 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.22 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.06 2.29 6.27 -2.39 -0.01 2.27 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.27 15.84 8.29 -92.71 -0.77 15.07 16 32 H 0.06 2.21 7.86 -2.39 -0.02 2.19 16 33 H 0.03 1.48 7.60 -2.38 -0.02 1.46 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.02 0.84 5.85 -2.39 -0.01 0.82 16 38 H 0.06 1.79 7.39 -2.38 -0.02 1.78 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.13 6.60 7.83 -2.91 -0.02 6.58 16 Total: -1.00 -88.06 325.80 4.94 -83.11 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.03 Total: 17.90 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.59 Total: 8.69 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.64 Total: -109.99 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.07 Total: -45.18 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -88.06 4.94 -83.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.948 kcal (2) G-P(sol) polarization free energy of solvation -88.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds