Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34952 * 126.03545 * 2 1 4 4 C 1.35312 * 107.74418 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.03981 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.38951 * 347.99309 * 5 4 3 7 7 C 1.54390 * 110.34540 * 225.75519 * 5 4 3 8 8 N 1.48146 * 104.61473 * 217.26491 * 7 5 4 9 9 C 1.34778 * 127.83486 * 219.56328 * 8 7 5 10 10 O 1.21689 * 120.00436 * 180.02562 * 9 8 7 11 11 C 1.46385 * 119.99956 * 0.02624 * 9 8 7 12 12 H 1.08000 * 119.99930 * 0.02562 * 11 9 8 13 13 C 1.40046 * 119.99693 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00377 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99539 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47106 * 60.00480 * 15 13 11 17 17 H 1.48503 * 109.46858 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47039 * 300.00219 * 15 13 11 19 19 C 1.48147 * 104.32840 * 39.58472 * 8 7 5 20 20 C 1.54290 * 110.34212 * 110.21933 * 5 4 3 21 21 C 1.53001 * 110.34122 * 359.97438 * 20 5 4 22 22 C 1.53006 * 110.43137 * 237.79124 * 20 5 4 23 23 C 1.39870 * 107.92229 * 0.25955 * 4 3 2 24 24 N 1.30844 * 108.20110 * 359.55980 * 23 4 3 25 25 H 1.08998 * 109.46639 * 90.00552 * 1 2 3 26 26 H 1.08997 * 109.46593 * 210.00002 * 1 2 3 27 27 H 1.08999 * 109.47336 * 330.00364 * 1 2 3 28 28 H 1.07997 * 126.12337 * 359.95515 * 3 2 1 29 29 H 1.08999 * 110.40112 * 98.47987 * 7 5 4 30 30 H 1.09000 * 110.40209 * 336.04739 * 7 5 4 31 31 H 0.96995 * 119.99870 * 179.97438 * 14 13 11 32 32 H 1.08996 * 110.40355 * 201.62982 * 19 8 7 33 33 H 1.09000 * 110.50337 * 79.24602 * 19 8 7 34 34 H 1.09004 * 109.47062 * 183.18051 * 21 20 5 35 35 H 1.09000 * 109.47134 * 63.17897 * 21 20 5 36 36 H 1.08999 * 109.47194 * 303.17798 * 21 20 5 37 37 H 1.09001 * 109.46964 * 181.53079 * 22 20 5 38 38 H 1.09003 * 109.46922 * 301.53311 * 22 20 5 39 39 H 1.09000 * 109.47280 * 61.53056 * 22 20 5 40 40 H 1.08000 * 125.90031 * 179.73877 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.4938 2.5785 -0.2131 7 6 5.7932 1.0371 -1.0362 8 7 7.1115 1.2580 -0.3973 9 6 8.2492 1.6894 -0.9770 10 8 9.2594 1.8208 -0.3115 11 6 8.2697 2.0000 -2.4074 12 1 7.3730 1.8838 -2.9981 13 6 9.4517 2.4487 -3.0096 14 7 10.5365 2.5898 -2.2949 15 14 9.4776 2.8457 -4.8348 16 1 8.4975 3.9240 -5.1208 17 1 10.8379 3.2965 -5.2240 18 1 9.1182 1.6315 -5.6106 19 6 6.8957 0.8968 1.0231 20 6 5.4950 1.4528 1.3580 21 6 4.7528 0.4974 2.2946 22 6 5.6114 2.8382 1.9970 23 6 3.5347 -0.7320 -0.0051 24 7 2.2892 -1.1328 0.0006 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9281 2.1193 -0.0007 29 1 5.7171 1.6116 -1.9593 30 1 5.6397 -0.0238 -1.2339 31 1 11.3552 2.9002 -2.7121 32 1 7.6514 1.3655 1.6534 33 1 6.9150 -0.1857 1.1489 34 1 5.2456 0.4859 3.2669 35 1 4.7618 -0.5068 1.8709 36 1 3.7224 0.8324 2.4135 37 1 6.1505 2.7587 2.9410 38 1 6.1522 3.5041 1.3246 39 1 4.6144 3.2386 2.1806 40 1 4.4055 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584003890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = 45.563694 kcal Electronic energy + Delta-G solvation = -22063.634075 eV Core-core repulsion = 18880.284274 eV Total energy + Delta-G solvation = -3183.349800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35323 -38.83236 -36.18807 -33.29806 -32.62198 -32.30606 -30.95652 -28.35305 -27.21229 -26.96706 -25.77639 -24.63704 -22.72404 -20.92109 -20.29046 -19.21271 -18.39335 -16.51991 -16.43910 -15.55026 -15.43104 -14.86637 -14.52906 -14.13622 -13.84837 -13.78428 -13.42347 -13.02473 -12.82002 -12.76561 -12.52490 -12.39503 -11.82396 -11.70623 -11.45739 -11.25395 -11.08174 -11.01643 -10.89138 -10.61866 -10.53203 -10.29830 -10.09846 -10.04445 -9.95884 -9.30337 -8.81942 -8.16104 -7.59030 -7.16924 -6.16452 -4.60508 1.94387 2.54986 2.90731 3.17736 3.22478 3.24342 4.11236 4.43882 4.58808 4.68253 4.85947 4.96292 5.03458 5.09600 5.19846 5.21718 5.30475 5.60902 5.66127 5.76666 5.80020 5.87312 5.90689 5.99906 6.10683 6.20360 6.25054 6.34222 6.45329 6.48322 6.54988 6.70296 6.73708 6.78908 6.80491 7.05220 7.37887 7.47442 7.76695 8.15191 8.47820 9.05400 9.58960 10.61831 10.81174 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.004876 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.607171 B = 5740.997549 C = 6512.042925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.384 5.384 3 C 0.046 3.954 4 C -0.201 4.201 5 C -0.020 4.020 6 H 0.079 0.921 7 C 0.125 3.875 8 N -0.644 5.644 9 C 0.578 3.422 10 O -0.577 6.577 11 C -0.539 4.539 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.119 3.881 20 C -0.071 4.071 21 C -0.126 4.126 22 C -0.131 4.131 23 C 0.061 3.939 24 N -0.303 5.303 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.169 0.831 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.269 0.731 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 -2.016 4.768 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.167 5.167 3 C -0.098 4.098 4 C -0.213 4.213 5 C -0.041 4.041 6 H 0.097 0.903 7 C 0.000 4.000 8 N -0.382 5.382 9 C 0.384 3.616 10 O -0.459 6.459 11 C -0.576 4.576 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.006 4.006 20 C -0.072 4.072 21 C -0.184 4.184 22 C -0.188 4.188 23 C -0.125 4.125 24 N -0.124 5.124 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.187 0.813 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.941 -2.845 5.084 19.817 hybrid contribution 0.334 0.911 -0.946 1.355 sum -18.607 -1.934 4.138 19.160 Atomic orbital electron populations 1.21754 0.74778 1.04048 1.03014 1.48344 1.06252 1.03932 1.58219 1.22247 0.90860 0.93115 1.03627 1.19939 0.93873 0.93835 1.13649 1.20575 0.90724 0.97478 0.95346 0.90256 1.22018 0.83151 0.99091 0.95766 1.49204 1.10101 1.71783 1.07156 1.17977 0.79261 0.76158 0.88159 1.90612 1.32073 1.57844 1.65389 1.20839 0.97087 1.47388 0.92242 0.91323 1.25708 0.94945 0.93317 0.99208 1.70010 1.00364 1.33217 1.36206 0.86451 0.77835 0.79435 0.83149 1.19282 1.20561 1.19263 1.22010 0.94359 0.97657 0.86537 1.21491 0.95619 0.95784 0.94306 1.21889 0.99246 0.99052 0.98201 1.21794 1.00661 0.96017 1.00355 1.23763 0.94820 0.94843 0.99092 1.77330 1.01726 1.08245 1.25116 0.91115 0.89654 0.89838 0.81350 0.90700 0.93275 0.92062 0.91246 0.93620 0.93509 0.92413 0.93144 0.92985 0.92127 0.93385 0.80227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 11.47 59.85 0.69 1.40 16 2 N -0.38 -4.35 4.01 -68.16 -0.27 -4.63 16 3 C 0.05 0.52 11.38 -17.22 -0.20 0.32 16 4 C -0.20 -2.65 3.27 -105.06 -0.34 -2.99 16 5 C -0.02 -0.31 3.14 -90.37 -0.28 -0.59 16 6 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 7 C 0.12 2.31 6.37 -2.41 -0.02 2.29 16 8 N -0.64 -14.81 3.32 -170.96 -0.57 -15.37 16 9 C 0.58 16.72 7.85 -12.98 -0.10 16.61 16 10 O -0.58 -19.02 15.29 5.20 0.08 -18.94 16 11 C -0.54 -15.31 9.07 -35.63 -0.32 -15.64 16 12 H 0.07 1.80 6.50 -52.49 -0.34 1.45 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.21 11.83 55.55 0.66 -22.56 16 15 Si 0.91 20.25 29.56 -169.99 -5.02 15.23 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C 0.12 2.30 6.14 -2.41 -0.01 2.29 16 20 C -0.07 -1.07 1.03 -153.11 -0.16 -1.23 16 21 C -0.13 -1.65 7.19 37.16 0.27 -1.38 16 22 C -0.13 -1.92 8.24 37.16 0.31 -1.61 16 23 C 0.06 0.83 8.79 -17.36 -0.15 0.68 16 24 N -0.30 -4.21 12.58 30.63 0.39 -3.82 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.07 1.44 6.69 -51.93 -0.35 1.09 16 30 H 0.05 0.86 6.77 -51.93 -0.35 0.51 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 32 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 33 H 0.05 0.84 7.78 -51.93 -0.40 0.43 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.76 5.72 -51.93 -0.30 0.46 16 36 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.18 2.32 7.44 -52.49 -0.39 1.93 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -35.86 324.25 -6.11 -41.97 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.83 Total: 0.72 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.42 Total: 2.52 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.20 Total: -46.38 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.86 -6.11 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.534 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds