Wall clock time and date at job start Mon Mar 30 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34952 * 126.03545 * 2 1 4 4 C 1.35312 * 107.74418 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.03981 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.38951 * 347.99309 * 5 4 3 7 7 C 1.54390 * 110.34540 * 225.75519 * 5 4 3 8 8 N 1.48146 * 104.61473 * 217.26491 * 7 5 4 9 9 C 1.34778 * 127.83486 * 219.56328 * 8 7 5 10 10 O 1.21689 * 120.00436 * 180.02562 * 9 8 7 11 11 C 1.46385 * 119.99956 * 0.02624 * 9 8 7 12 12 H 1.08000 * 119.99930 * 0.02562 * 11 9 8 13 13 C 1.40046 * 119.99693 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00377 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99539 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47106 * 60.00480 * 15 13 11 17 17 H 1.48503 * 109.46858 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47039 * 300.00219 * 15 13 11 19 19 C 1.48147 * 104.32840 * 39.58472 * 8 7 5 20 20 C 1.54290 * 110.34212 * 110.21933 * 5 4 3 21 21 C 1.53001 * 110.34122 * 359.97438 * 20 5 4 22 22 C 1.53006 * 110.43137 * 237.79124 * 20 5 4 23 23 C 1.39870 * 107.92229 * 0.25955 * 4 3 2 24 24 N 1.30844 * 108.20110 * 359.55980 * 23 4 3 25 25 H 1.08998 * 109.46639 * 90.00552 * 1 2 3 26 26 H 1.08997 * 109.46593 * 210.00002 * 1 2 3 27 27 H 1.08999 * 109.47336 * 330.00364 * 1 2 3 28 28 H 1.07997 * 126.12337 * 359.95515 * 3 2 1 29 29 H 1.08999 * 110.40112 * 98.47987 * 7 5 4 30 30 H 1.09000 * 110.40209 * 336.04739 * 7 5 4 31 31 H 0.96995 * 119.99870 * 179.97438 * 14 13 11 32 32 H 1.08996 * 110.40355 * 201.62982 * 19 8 7 33 33 H 1.09000 * 110.50337 * 79.24602 * 19 8 7 34 34 H 1.09004 * 109.47062 * 183.18051 * 21 20 5 35 35 H 1.09000 * 109.47134 * 63.17897 * 21 20 5 36 36 H 1.08999 * 109.47194 * 303.17798 * 21 20 5 37 37 H 1.09001 * 109.46964 * 181.53079 * 22 20 5 38 38 H 1.09003 * 109.46922 * 301.53311 * 22 20 5 39 39 H 1.09000 * 109.47280 * 61.53056 * 22 20 5 40 40 H 1.08000 * 125.90031 * 179.73877 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.4938 2.5785 -0.2131 7 6 5.7932 1.0371 -1.0362 8 7 7.1115 1.2580 -0.3973 9 6 8.2492 1.6894 -0.9770 10 8 9.2594 1.8208 -0.3115 11 6 8.2697 2.0000 -2.4074 12 1 7.3730 1.8838 -2.9981 13 6 9.4517 2.4487 -3.0096 14 7 10.5365 2.5898 -2.2949 15 14 9.4776 2.8457 -4.8348 16 1 8.4975 3.9240 -5.1208 17 1 10.8379 3.2965 -5.2240 18 1 9.1182 1.6315 -5.6106 19 6 6.8957 0.8968 1.0231 20 6 5.4950 1.4528 1.3580 21 6 4.7528 0.4974 2.2946 22 6 5.6114 2.8382 1.9970 23 6 3.5347 -0.7320 -0.0051 24 7 2.2892 -1.1328 0.0006 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9281 2.1193 -0.0007 29 1 5.7171 1.6116 -1.9593 30 1 5.6397 -0.0238 -1.2339 31 1 11.3552 2.9002 -2.7121 32 1 7.6514 1.3655 1.6534 33 1 6.9150 -0.1857 1.1489 34 1 5.2456 0.4859 3.2669 35 1 4.7618 -0.5068 1.8709 36 1 3.7224 0.8324 2.4135 37 1 6.1505 2.7587 2.9410 38 1 6.1522 3.5041 1.3246 39 1 4.6144 3.2386 2.1806 40 1 4.4055 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584003890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:59 Heat of formation + Delta-G solvation = 20.718851 kcal Electronic energy + Delta-G solvation = -22064.711428 eV Core-core repulsion = 18880.284274 eV Total energy + Delta-G solvation = -3184.427154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33455 -40.32885 -38.18598 -34.71649 -34.28710 -33.90460 -32.08017 -29.44278 -28.97317 -28.33012 -26.73203 -26.38545 -24.13103 -21.84069 -21.45728 -21.05043 -19.64423 -18.35792 -17.63377 -17.42715 -16.41380 -16.19719 -16.02435 -15.56067 -15.34542 -15.01861 -14.57566 -14.44245 -14.17422 -13.79231 -13.60823 -13.50235 -13.37476 -13.06181 -12.98059 -12.76952 -12.64630 -12.57480 -12.44738 -12.24705 -12.04065 -11.77557 -11.52633 -11.43192 -11.17482 -10.91304 -10.20466 -9.85521 -9.18132 -9.02620 -8.28287 -6.83165 1.06211 1.39538 1.43443 1.54923 1.81056 1.89714 2.24397 2.47035 2.90441 3.54243 3.69078 3.76176 3.92624 4.05691 4.15785 4.37150 4.47040 4.50408 4.52969 4.55794 4.58559 4.76618 4.77786 4.87155 4.90814 4.95698 4.96216 5.07273 5.11353 5.22021 5.27602 5.34998 5.38697 5.46241 5.52844 5.69096 5.78277 6.05332 6.26963 6.45226 6.83971 6.88122 7.55601 8.48298 8.68835 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.004876 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.607171 B = 5740.997549 C = 6512.042925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.380 5.380 3 C 0.066 3.934 4 C -0.222 4.222 5 C -0.002 4.002 6 H 0.087 0.913 7 C 0.122 3.878 8 N -0.652 5.652 9 C 0.559 3.441 10 O -0.634 6.634 11 C -0.565 4.565 12 H 0.086 0.914 13 C 0.029 3.971 14 N -0.823 5.823 15 Si 0.996 3.004 16 H -0.252 1.252 17 H -0.273 1.273 18 H -0.255 1.255 19 C 0.114 3.886 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.128 4.128 23 C 0.052 3.948 24 N -0.332 5.332 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.205 0.795 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.274 0.726 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.411 -1.445 3.918 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.234 4.234 5 C -0.023 4.023 6 H 0.106 0.894 7 C -0.002 4.002 8 N -0.389 5.389 9 C 0.366 3.634 10 O -0.522 6.522 11 C -0.601 4.601 12 H 0.104 0.896 13 C -0.185 4.185 14 N -0.453 5.453 15 Si 0.815 3.185 16 H -0.176 1.176 17 H -0.198 1.198 18 H -0.179 1.179 19 C -0.010 4.010 20 C -0.061 4.061 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.134 4.134 24 N -0.154 5.154 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.222 0.778 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.560 -2.313 4.254 23.074 hybrid contribution 1.317 0.680 -0.622 1.608 sum -21.243 -1.633 3.632 21.612 Atomic orbital electron populations 1.22150 0.72136 1.05817 1.04362 1.48721 1.07735 1.03250 1.56580 1.22712 0.89996 0.94496 1.00871 1.19689 0.93918 0.93241 1.16518 1.20323 0.90428 0.98152 0.93376 0.89429 1.22236 0.81846 0.99676 0.96455 1.48971 1.10420 1.70352 1.09110 1.18332 0.80008 0.76245 0.88798 1.90549 1.34665 1.60376 1.66605 1.21332 0.98315 1.47868 0.92592 0.89635 1.26978 0.93931 0.92253 1.05375 1.70191 1.01456 1.34354 1.39269 0.85103 0.78444 0.79845 0.75116 1.17611 1.19779 1.17935 1.22229 0.96475 0.98085 0.84205 1.21419 0.92866 0.96457 0.95361 1.21775 0.99570 0.98194 0.97640 1.21768 1.02134 0.95009 0.99566 1.23755 0.94918 0.95203 0.99477 1.77290 1.02026 1.09851 1.26205 0.89944 0.89376 0.86688 0.77828 0.91666 0.92423 0.91572 0.94247 0.92852 0.92899 0.92598 0.91664 0.92757 0.95237 0.90092 0.80754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.47 127.77 1.47 2.37 16 2 N -0.38 -7.25 4.01 -369.55 -1.48 -8.73 16 3 C 0.07 1.20 11.38 83.54 0.95 2.15 16 4 C -0.22 -5.27 3.27 -20.15 -0.07 -5.33 16 5 C 0.00 -0.06 3.14 -10.63 -0.03 -0.10 16 6 H 0.09 2.36 7.71 -2.39 -0.02 2.34 16 7 C 0.12 4.50 6.37 86.53 0.55 5.06 16 8 N -0.65 -31.17 3.32 -813.02 -2.70 -33.87 16 9 C 0.56 33.99 7.85 86.36 0.68 34.67 16 10 O -0.63 -44.49 15.29 -4.31 -0.07 -44.56 16 11 C -0.56 -32.98 9.07 24.83 0.23 -32.76 16 12 H 0.09 4.52 6.50 -2.91 -0.02 4.50 16 13 C 0.03 1.68 5.50 85.30 0.47 2.15 16 14 N -0.82 -51.59 11.83 21.83 0.26 -51.34 16 15 Si 1.00 41.71 29.56 68.60 2.03 43.73 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 C 0.11 4.58 6.14 86.53 0.53 5.11 16 20 C -0.06 -1.76 1.03 -51.27 -0.05 -1.82 16 21 C -0.11 -2.75 7.19 71.98 0.52 -2.23 16 22 C -0.13 -3.61 8.24 71.98 0.59 -3.02 16 23 C 0.05 1.33 8.79 85.24 0.75 2.08 16 24 N -0.33 -8.52 12.58 -57.02 -0.72 -9.24 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.06 2.51 6.69 -2.39 -0.02 2.50 16 30 H 0.06 2.03 6.77 -2.39 -0.02 2.01 16 31 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 32 H 0.04 1.79 7.60 -2.39 -0.02 1.77 16 33 H 0.05 2.03 7.78 -2.39 -0.02 2.01 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.38 5.72 -2.39 -0.01 1.37 16 36 H 0.06 1.41 7.36 -2.39 -0.02 1.39 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.18 4.46 7.44 -2.91 -0.02 4.43 16 Total: -1.00 -82.96 324.25 4.94 -78.02 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.03 Total: 17.64 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.58 Total: 8.34 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.64 Total: -103.17 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.07 Total: -44.56 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -82.96 4.94 -78.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.740 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds