Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38625 * 120.44733 * 2 1 4 4 C 1.38577 * 118.39862 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.44591 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47159 * 94.99859 * 5 4 3 7 7 C 1.34774 * 119.99911 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00322 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47369 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46989 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47025 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47529 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99583 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00737 * 180.02562 * 13 12 11 16 16 N 1.31526 * 119.99495 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00502 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47177 * 119.99841 * 17 15 13 20 20 H 1.48498 * 109.47050 * 239.99413 * 17 15 13 21 21 N 1.32341 * 119.10626 * 0.02562 * 4 3 2 22 22 C 1.31788 * 120.82232 * 359.97438 * 21 4 3 23 23 N 1.31807 * 121.74845 * 0.02562 * 22 21 4 24 24 H 1.08993 * 109.47160 * 89.99701 * 1 2 3 25 25 H 1.08995 * 109.46845 * 209.99854 * 1 2 3 26 26 H 1.09000 * 109.47013 * 329.99599 * 1 2 3 27 27 H 1.08000 * 120.79754 * 359.74999 * 3 2 1 28 28 H 1.08999 * 109.47149 * 214.99971 * 5 4 3 29 29 H 1.08997 * 109.46997 * 335.00029 * 5 4 3 30 30 H 0.97002 * 120.00134 * 0.02562 * 6 5 4 31 31 H 1.08999 * 109.46831 * 300.00416 * 9 7 6 32 32 H 1.09000 * 109.46875 * 59.99906 * 9 7 6 33 33 H 1.08999 * 109.47144 * 299.99808 * 10 9 7 34 34 H 1.08997 * 109.47048 * 59.99893 * 10 9 7 35 35 H 1.08999 * 109.47206 * 299.99996 * 11 10 9 36 36 H 1.09005 * 109.47024 * 60.00440 * 11 10 9 37 37 H 1.09004 * 109.47344 * 300.00697 * 12 11 10 38 38 H 1.09000 * 109.47199 * 60.00309 * 12 11 10 39 39 H 0.97003 * 119.99424 * 180.02562 * 16 15 13 40 40 H 1.07995 * 119.12765 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4040 2.4166 -0.0012 6 7 4.7684 2.7641 1.3746 7 6 5.4989 3.8700 1.6193 8 8 5.8542 4.5777 0.7007 9 6 5.8743 4.2272 3.0344 10 6 6.6961 5.5178 3.0338 11 6 7.0766 5.8807 4.4706 12 6 7.8990 7.1709 4.4699 13 6 8.2744 7.5282 5.8850 14 1 7.9583 6.8977 6.7030 15 6 9.0212 8.6597 6.1355 16 7 9.4065 9.4271 5.1392 17 14 9.4859 9.1029 7.8896 18 1 8.9338 8.0856 8.8200 19 1 10.9650 9.1389 8.0159 20 1 8.9277 10.4368 8.2276 21 7 4.1964 -0.0330 -0.0016 22 6 3.4957 -1.1492 -0.0015 23 7 2.1777 -1.1406 -0.0010 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6900 2.1419 -0.0040 28 1 5.3090 2.2707 -0.5909 29 1 3.8135 3.2233 -0.4354 30 1 4.4846 2.1979 2.1093 31 1 4.9695 4.3733 3.6244 32 1 6.4647 3.4203 3.4684 33 1 7.6009 5.3721 2.4437 34 1 6.1054 6.3245 2.6000 35 1 6.1716 6.0266 5.0603 36 1 7.6673 5.0740 4.9049 37 1 8.8040 7.0247 3.8802 38 1 7.3088 7.9778 4.0356 39 1 9.9322 10.2231 5.3155 40 1 4.0152 -2.0960 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -19.620477 kcal Electronic energy + Delta-G solvation = -19743.262262 eV Core-core repulsion = 16557.085864 eV Total energy + Delta-G solvation = -3186.176398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61741 -39.66897 -35.97243 -34.87749 -34.46128 -32.95395 -32.55637 -30.01617 -29.21722 -27.39373 -25.37393 -24.56370 -22.55634 -21.84037 -20.38502 -19.96225 -18.15566 -17.40323 -16.58003 -16.14878 -16.00606 -15.96725 -15.75129 -15.29668 -14.43639 -14.39674 -13.81857 -13.70531 -13.57809 -13.27537 -13.09188 -12.76821 -12.59324 -12.08355 -11.69281 -11.58875 -11.36388 -11.00816 -10.98718 -10.53136 -10.47785 -10.40289 -10.13609 -9.84208 -9.72689 -9.60421 -9.30220 -9.21164 -8.95980 -8.29602 -5.94287 -3.96621 0.35061 0.47310 2.67174 2.92278 3.33849 3.35730 3.41018 3.45012 3.53031 3.53612 3.82587 4.43591 4.46292 4.49902 4.73169 4.87188 4.90662 4.97163 5.12036 5.29453 5.30131 5.35404 5.38619 5.40494 5.41330 5.85358 5.88544 6.13686 6.14846 6.31248 6.52046 6.55735 6.85208 7.03023 7.20916 7.32114 7.59490 7.75686 7.91494 8.07355 8.18189 8.49205 9.11333 9.66982 11.17051 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042280 B = 0.002178 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.093198 B =12853.301456 C =12997.932062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.176 3.824 3 C -0.210 4.210 4 C 0.162 3.838 5 C 0.169 3.831 6 N -0.732 5.732 7 C 0.516 3.484 8 O -0.532 6.532 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.510 5.510 22 C 0.301 3.699 23 N -0.521 5.521 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.401 0.599 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 -21.298 -11.042 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.030 3.970 3 C -0.232 4.232 4 C 0.016 3.984 5 C 0.045 3.955 6 N -0.387 5.387 7 C 0.303 3.697 8 O -0.407 6.407 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.147 4.147 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 N -0.225 5.225 22 C 0.013 3.987 23 N -0.236 5.236 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.169 0.831 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -17.635 -21.464 -11.766 30.168 hybrid contribution -0.226 0.665 1.222 1.409 sum -17.860 -20.799 -10.544 29.373 Atomic orbital electron populations 1.20825 0.87512 1.04365 1.03912 1.21827 0.97853 0.88073 0.89265 1.22717 0.95487 1.00976 1.04065 1.21699 0.91481 0.93913 0.91326 1.20103 0.99118 0.90588 0.85681 1.45985 1.56993 1.27906 1.07800 1.21143 0.76592 0.79358 0.92570 1.90723 1.53007 1.50305 1.46636 1.21798 1.02429 1.01524 0.91961 1.21461 0.99276 0.94142 0.99266 1.21651 0.99780 1.00307 0.93067 1.19105 0.94746 0.91141 0.96817 1.21321 1.32901 1.08399 0.93105 0.92713 1.25054 0.96168 0.96515 0.96939 1.69994 1.37746 1.15083 1.30636 0.86551 0.78149 0.78264 0.85113 1.19794 1.21061 1.21071 1.68294 1.42025 0.98678 1.13537 1.25047 0.86617 0.96869 0.90192 1.68294 1.10497 1.30484 1.14303 0.89453 0.89726 0.89843 0.83141 0.89150 0.89312 0.76555 0.89071 0.89005 0.91720 0.91752 0.93477 0.93458 0.96556 0.96571 0.93115 0.78410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.22 36.01 0.37 -0.06 16 2 C 0.18 1.24 6.82 -82.24 -0.56 0.68 16 3 C -0.21 -1.43 9.52 -39.31 -0.37 -1.80 16 4 C 0.16 1.38 6.19 -82.25 -0.51 0.87 16 5 C 0.17 1.58 6.03 -5.19 -0.03 1.55 16 6 N -0.73 -7.32 5.55 -61.47 -0.34 -7.66 16 7 C 0.52 6.99 7.83 -10.98 -0.09 6.90 16 8 O -0.53 -9.41 15.98 5.55 0.09 -9.32 16 9 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 10 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 11 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 12 C 0.02 0.50 4.97 -27.89 -0.14 0.37 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 N -0.51 -4.82 10.38 -10.80 -0.11 -4.93 16 22 C 0.30 2.44 12.29 -92.15 -1.13 1.31 16 23 N -0.52 -4.42 10.38 -10.79 -0.11 -4.53 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.20 8.10 -51.93 -0.42 -0.22 16 27 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 30 H 0.40 3.18 8.46 -40.82 -0.35 2.84 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -35.36 346.49 -9.05 -44.41 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.22 Total: -2.92 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.29 Total: -10.36 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.17 Total: -43.99 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.36 -9.05 -44.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.788 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds