Wall clock time and date at job start Mon Mar 30 2020 01:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38625 * 120.44733 * 2 1 4 4 C 1.38577 * 118.39862 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.44591 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47159 * 94.99859 * 5 4 3 7 7 C 1.34774 * 119.99911 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00322 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00167 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47369 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46989 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47025 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47529 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99583 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00737 * 180.02562 * 13 12 11 16 16 N 1.31526 * 119.99495 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00502 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47177 * 119.99841 * 17 15 13 20 20 H 1.48498 * 109.47050 * 239.99413 * 17 15 13 21 21 N 1.32341 * 119.10626 * 0.02562 * 4 3 2 22 22 C 1.31788 * 120.82232 * 359.97438 * 21 4 3 23 23 N 1.31807 * 121.74845 * 0.02562 * 22 21 4 24 24 H 1.08993 * 109.47160 * 89.99701 * 1 2 3 25 25 H 1.08995 * 109.46845 * 209.99854 * 1 2 3 26 26 H 1.09000 * 109.47013 * 329.99599 * 1 2 3 27 27 H 1.08000 * 120.79754 * 359.74999 * 3 2 1 28 28 H 1.08999 * 109.47149 * 214.99971 * 5 4 3 29 29 H 1.08997 * 109.46997 * 335.00029 * 5 4 3 30 30 H 0.97002 * 120.00134 * 0.02562 * 6 5 4 31 31 H 1.08999 * 109.46831 * 300.00416 * 9 7 6 32 32 H 1.09000 * 109.46875 * 59.99906 * 9 7 6 33 33 H 1.08999 * 109.47144 * 299.99808 * 10 9 7 34 34 H 1.08997 * 109.47048 * 59.99893 * 10 9 7 35 35 H 1.08999 * 109.47206 * 299.99996 * 11 10 9 36 36 H 1.09005 * 109.47024 * 60.00440 * 11 10 9 37 37 H 1.09004 * 109.47344 * 300.00697 * 12 11 10 38 38 H 1.09000 * 109.47199 * 60.00309 * 12 11 10 39 39 H 0.97003 * 119.99424 * 180.02562 * 16 15 13 40 40 H 1.07995 * 119.12765 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4040 2.4166 -0.0012 6 7 4.7684 2.7641 1.3746 7 6 5.4989 3.8700 1.6193 8 8 5.8542 4.5777 0.7007 9 6 5.8743 4.2272 3.0344 10 6 6.6961 5.5178 3.0338 11 6 7.0766 5.8807 4.4706 12 6 7.8990 7.1709 4.4699 13 6 8.2744 7.5282 5.8850 14 1 7.9583 6.8977 6.7030 15 6 9.0212 8.6597 6.1355 16 7 9.4065 9.4271 5.1392 17 14 9.4859 9.1029 7.8896 18 1 8.9338 8.0856 8.8200 19 1 10.9650 9.1389 8.0159 20 1 8.9277 10.4368 8.2276 21 7 4.1964 -0.0330 -0.0016 22 6 3.4957 -1.1492 -0.0015 23 7 2.1777 -1.1406 -0.0010 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6900 2.1419 -0.0040 28 1 5.3090 2.2707 -0.5909 29 1 3.8135 3.2233 -0.4354 30 1 4.4846 2.1979 2.1093 31 1 4.9695 4.3733 3.6244 32 1 6.4647 3.4203 3.4684 33 1 7.6009 5.3721 2.4437 34 1 6.1054 6.3245 2.6000 35 1 6.1716 6.0266 5.0603 36 1 7.6673 5.0740 4.9049 37 1 8.8040 7.0247 3.8802 38 1 7.3088 7.9778 4.0356 39 1 9.9322 10.2231 5.3155 40 1 4.0152 -2.0960 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:45 Heat of formation + Delta-G solvation = -43.075513 kcal Electronic energy + Delta-G solvation = -19744.279349 eV Core-core repulsion = 16557.085864 eV Total energy + Delta-G solvation = -3187.193485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19793 -40.73761 -36.92259 -36.42635 -35.11446 -34.60296 -33.59048 -31.57331 -29.86368 -28.37616 -26.94449 -25.17583 -24.11193 -22.60402 -21.81107 -21.33936 -18.77122 -18.42187 -18.23521 -17.42327 -16.93219 -16.76398 -16.47287 -16.44616 -15.91408 -15.69058 -14.87142 -14.54725 -14.45922 -14.11860 -13.97753 -13.78346 -13.57295 -13.48942 -13.26652 -13.11330 -12.83534 -12.31100 -12.13994 -12.12680 -11.90832 -11.63685 -11.36348 -11.34750 -11.15167 -10.85645 -10.54882 -10.53599 -10.34558 -10.22402 -8.18183 -6.30061 -0.23485 -0.07259 1.40816 1.41709 1.55192 1.61429 2.10184 2.42406 2.73059 2.89539 3.08463 3.14503 3.28973 3.78630 3.90929 4.01582 4.07050 4.16044 4.24179 4.43030 4.54492 4.62776 4.69666 4.70342 4.73094 4.84707 4.85781 4.89716 5.06638 5.21105 5.24673 5.34507 5.40508 5.41517 5.58626 5.79736 5.89456 5.96715 6.26355 6.43215 6.88699 7.02762 7.18842 7.39430 8.94192 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042280 B = 0.002178 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.093198 B =12853.301456 C =12997.932062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.170 3.830 3 C -0.204 4.204 4 C 0.152 3.848 5 C 0.172 3.828 6 N -0.713 5.713 7 C 0.517 3.483 8 O -0.581 6.581 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.096 4.096 12 C 0.017 3.983 13 C -0.540 4.540 14 H 0.066 0.934 15 C -0.009 4.009 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.279 1.279 21 N -0.535 5.535 22 C 0.293 3.707 23 N -0.537 5.537 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.175 0.825 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.414 0.586 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.059 0.941 37 H -0.016 1.016 38 H -0.014 1.014 39 H 0.263 0.737 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.242 -22.727 -9.422 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.023 3.977 3 C -0.226 4.226 4 C 0.006 3.994 5 C 0.048 3.952 6 N -0.367 5.367 7 C 0.306 3.694 8 O -0.461 6.461 9 C -0.167 4.167 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.020 4.020 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.206 4.206 16 N -0.578 5.578 17 Si 0.794 3.206 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.204 1.204 21 N -0.250 5.250 22 C 0.005 3.995 23 N -0.253 5.253 24 H 0.117 0.883 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.192 0.808 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.250 0.750 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.003 0.997 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.431 -22.945 -10.131 31.728 hybrid contribution 0.287 1.078 0.652 1.292 sum -19.144 -21.867 -9.479 30.570 Atomic orbital electron populations 1.20929 0.85320 1.05278 1.04851 1.22379 0.99315 0.87737 0.88245 1.22932 0.94692 1.02040 1.02911 1.21591 0.92148 0.93242 0.92393 1.20079 0.98732 0.91543 0.84850 1.45768 1.55424 1.26722 1.08774 1.21162 0.76443 0.79643 0.92170 1.90715 1.55228 1.52181 1.47945 1.21671 1.03226 0.99424 0.92357 1.21251 0.98993 0.96387 0.96810 1.21451 0.99418 0.97313 0.95188 1.19071 0.93968 0.93471 0.95462 1.21784 1.32996 1.08820 0.94162 0.91616 1.26105 0.96025 0.96432 1.01999 1.70146 1.38539 1.15706 1.33424 0.85327 0.77863 0.78295 0.79108 1.18121 1.20541 1.20447 1.68268 1.42857 0.99320 1.14552 1.25475 0.86817 0.97312 0.89861 1.68364 1.10690 1.31352 1.14848 0.88346 0.89821 0.87924 0.80783 0.90877 0.88438 0.74980 0.86065 0.86609 0.93872 0.93497 0.91960 0.92235 0.99724 0.99551 0.92877 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.22 71.24 0.73 0.15 16 2 C 0.17 2.05 6.82 42.58 0.29 2.34 16 3 C -0.20 -2.33 9.52 22.44 0.21 -2.12 16 4 C 0.15 2.39 6.19 42.56 0.26 2.65 16 5 C 0.17 3.06 6.03 85.63 0.52 3.58 16 6 N -0.71 -13.09 5.55 -466.79 -2.59 -15.68 16 7 C 0.52 13.49 7.83 87.66 0.69 14.17 16 8 O -0.58 -20.88 15.98 -3.05 -0.05 -20.92 16 9 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 10 C -0.10 -3.43 4.50 30.59 0.14 -3.29 16 11 C -0.10 -3.91 5.15 30.59 0.16 -3.75 16 12 C 0.02 0.96 4.97 29.85 0.15 1.11 16 13 C -0.54 -31.37 9.11 25.60 0.23 -31.13 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 15 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 16 N -0.94 -59.14 13.29 21.45 0.28 -58.85 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 N -0.53 -9.64 10.38 -188.09 -1.95 -11.59 16 22 C 0.29 4.46 12.29 180.88 2.22 6.68 16 23 N -0.54 -8.38 10.38 -188.06 -1.95 -10.33 16 24 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.10 0.17 8.10 -2.39 -0.02 0.15 16 27 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.58 8.06 -2.39 -0.02 1.56 16 30 H 0.41 5.53 8.46 -92.71 -0.78 4.75 16 31 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H -0.02 -0.95 8.14 -2.38 -0.02 -0.96 16 38 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.22 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -78.69 346.49 2.24 -76.45 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.24 Total: 6.50 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 6.23 Total: -12.55 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -6.21 Total: -96.46 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -78.69 2.24 -76.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds