Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36873 * 120.76816 * 2 1 4 4 C 1.40727 * 117.84407 * 179.73227 * 3 2 1 5 5 N 1.34178 * 120.39374 * 180.27686 * 4 3 2 6 6 C 1.32445 * 119.99993 * 175.38468 * 5 4 3 7 7 O 1.21690 * 120.00308 * 64.78773 * 6 5 4 8 8 C 1.50703 * 119.99989 * 244.79074 * 6 5 4 9 9 C 1.53000 * 109.47094 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47059 * 179.97438 * 9 8 6 11 11 C 1.52991 * 109.47181 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99452 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47296 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47129 * 119.99785 * 16 14 12 19 19 H 1.48501 * 109.47107 * 240.00062 * 16 14 12 20 20 N 1.35919 * 119.20826 * 0.56968 * 4 3 2 21 21 H 0.96999 * 119.25730 * 179.71355 * 20 4 3 22 22 N 1.28418 * 121.48521 * 359.68516 * 20 4 3 23 23 C 1.30540 * 122.40963 * 0.02607 * 22 20 4 24 24 C 1.50704 * 119.70692 * 180.02562 * 23 22 20 25 25 H 1.09002 * 109.46561 * 269.72381 * 1 2 3 26 26 H 1.08996 * 109.47586 * 149.72369 * 1 2 3 27 27 H 1.08995 * 109.47205 * 29.71826 * 1 2 3 28 28 H 1.08003 * 121.08068 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47150 * 299.99945 * 8 6 5 30 30 H 1.09002 * 109.47106 * 60.00004 * 8 6 5 31 31 H 1.08996 * 109.47046 * 300.00120 * 9 8 6 32 32 H 1.09002 * 109.46796 * 60.00236 * 9 8 6 33 33 H 1.09000 * 109.46805 * 300.00409 * 10 9 8 34 34 H 1.09000 * 109.46465 * 59.99967 * 10 9 8 35 35 H 1.09003 * 109.47272 * 300.00360 * 11 10 9 36 36 H 1.09004 * 109.47285 * 60.00084 * 11 10 9 37 37 H 0.97004 * 120.00036 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46852 * 269.98000 * 24 23 22 39 39 H 1.08996 * 109.47255 * 29.97480 * 24 23 22 40 40 H 1.08999 * 109.47322 * 149.97727 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1761 0.0000 4 6 3.6126 1.1043 0.0058 5 7 4.3496 2.2255 0.0117 6 6 5.6683 2.1507 0.1094 7 8 6.3157 1.6287 -0.7790 8 6 6.3672 2.7120 1.3209 9 6 7.8759 2.4971 1.1846 10 6 8.5854 3.0675 2.4143 11 6 10.0941 2.8532 2.2777 12 6 10.7929 3.4144 3.4892 13 1 10.2183 3.8773 4.2779 14 6 12.1658 3.3370 3.5907 15 7 12.8654 2.7729 2.6306 16 14 13.0319 4.0321 5.0927 17 1 12.0267 4.6084 6.0214 18 1 13.7773 2.9473 5.7805 19 1 13.9805 5.0936 4.6701 20 7 4.2145 -0.1143 -0.0007 21 1 5.1832 -0.1646 -0.0009 22 7 3.5297 -1.2006 -0.0059 23 6 2.2243 -1.2048 -0.0059 24 6 1.4816 -2.5161 -0.0117 25 1 -0.3632 -0.0050 1.0277 26 1 -0.3634 -0.8874 -0.5181 27 1 -0.3633 0.8924 -0.5094 28 1 1.6976 2.1283 -0.0004 29 1 6.1574 3.7787 1.3997 30 1 6.0076 2.2039 2.2157 31 1 8.0852 1.4303 1.1061 32 1 8.2358 3.0049 0.2898 33 1 8.3759 4.1343 2.4924 34 1 8.2255 2.5600 3.3093 35 1 10.3039 1.7864 2.1993 36 1 10.4537 3.3609 1.3827 37 1 13.8313 2.7188 2.7018 38 1 1.3022 -2.8275 -1.0408 39 1 2.0771 -3.2732 0.4984 40 1 0.5283 -2.3960 0.5030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588926787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = 19.584315 kcal Electronic energy + Delta-G solvation = -20249.719540 eV Core-core repulsion = 17065.243189 eV Total energy + Delta-G solvation = -3184.476351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29290 -39.57516 -36.26279 -35.37107 -34.80806 -32.62516 -32.14361 -29.85111 -29.45660 -28.26412 -25.68562 -24.06179 -23.49898 -22.02744 -20.12060 -19.89283 -19.49764 -17.73987 -16.59976 -16.41287 -16.11750 -15.39683 -15.18703 -14.92887 -14.37809 -14.10345 -14.07642 -13.88405 -13.71240 -13.46072 -12.89850 -12.59838 -12.37141 -12.23428 -11.77971 -11.64868 -11.43048 -11.36695 -10.97251 -10.54564 -10.52521 -10.50863 -10.42041 -10.35637 -9.59172 -9.53261 -9.17847 -8.95641 -8.28869 -8.17489 -5.93410 -3.95711 0.01094 0.81504 1.93826 2.33847 2.81825 3.34595 3.41530 3.46003 3.66779 3.77654 4.06317 4.15313 4.48231 4.52798 4.88007 4.94634 4.95907 5.04860 5.15417 5.22447 5.33270 5.39357 5.41758 5.45810 5.52312 5.58446 5.66534 5.92656 6.17425 6.27480 6.37437 6.56476 6.86351 7.03101 7.23138 7.35516 7.61184 7.76517 7.92262 8.03047 8.08238 8.50396 9.12144 9.67836 11.18022 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037414 B = 0.002528 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.209099 B =11075.228309 C =11200.152648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 C -0.115 4.115 4 C 0.413 3.587 5 N -0.634 5.634 6 C 0.489 3.511 7 O -0.523 6.523 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.444 5.444 21 H 0.448 0.552 22 N -0.219 5.219 23 C 0.066 3.934 24 C -0.091 4.091 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.169 0.831 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.914 -9.737 -5.184 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.145 4.145 4 C 0.156 3.844 5 N -0.382 5.382 6 C 0.278 3.722 7 O -0.399 6.399 8 C -0.180 4.180 9 C -0.145 4.145 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.147 4.147 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 N -0.176 5.176 21 H 0.295 0.705 22 N -0.040 5.040 23 C -0.107 4.107 24 C -0.149 4.149 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.187 0.813 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -29.600 -9.778 -5.750 31.699 hybrid contribution 1.002 0.706 0.821 1.476 sum -28.598 -9.071 -4.929 30.404 Atomic orbital electron populations 1.20926 0.88399 1.04434 1.03813 1.20882 0.98578 0.92134 0.93370 1.21182 0.89019 1.00420 1.03883 1.20280 0.94007 0.81476 0.88646 1.68836 1.08461 1.22342 1.38585 1.21962 0.86191 0.76267 0.87743 1.90793 1.70095 1.39767 1.39242 1.21897 0.97588 1.03406 0.95122 1.21510 0.90920 1.01701 1.00389 1.21642 0.98939 0.99222 0.94918 1.19106 0.88576 0.97065 0.97016 1.21325 0.91757 1.37765 1.04845 0.92685 1.25051 0.97740 0.95541 0.96326 1.69988 1.06378 1.44517 1.32653 0.86545 0.79630 0.78761 0.83118 1.19769 1.21055 1.21034 1.44151 1.11868 1.01353 1.60219 0.70463 1.70996 1.09741 1.13160 1.10130 1.21817 0.88265 0.97207 1.03445 1.20612 0.99306 0.91218 1.03791 0.89368 0.89874 0.90040 0.81327 0.88394 0.89368 0.92261 0.91727 0.93331 0.93554 0.96669 0.96560 0.93116 0.89856 0.89973 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.22 9.26 36.01 0.33 0.11 16 2 C -0.04 -0.24 5.91 -104.37 -0.62 -0.85 16 3 C -0.12 -0.94 9.80 -39.14 -0.38 -1.32 16 4 C 0.41 4.99 7.43 -155.79 -1.16 3.83 16 5 N -0.63 -9.50 10.42 -11.87 -0.12 -9.63 16 6 C 0.49 8.31 6.24 -12.01 -0.07 8.24 16 7 O -0.52 -10.31 15.65 5.20 0.08 -10.22 16 8 C -0.14 -2.27 5.77 -27.88 -0.16 -2.43 16 9 C -0.11 -2.09 4.50 -26.73 -0.12 -2.21 16 10 C -0.11 -2.41 5.15 -26.73 -0.14 -2.55 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 13 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -28.10 13.29 55.43 0.74 -27.37 16 16 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 N -0.44 -5.28 6.08 31.17 0.19 -5.09 16 21 H 0.45 5.85 6.73 -190.47 -1.28 4.57 16 22 N -0.22 -2.19 11.34 33.70 0.38 -1.81 16 23 C 0.07 0.46 6.87 -82.40 -0.57 -0.11 16 24 C -0.09 -0.29 9.42 36.01 0.34 0.05 16 25 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.08 0.04 6.80 -51.93 -0.35 -0.31 16 27 H 0.08 0.10 8.10 -51.93 -0.42 -0.32 16 28 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.08 6.77 -51.93 -0.35 -0.27 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -36.61 339.51 -8.75 -45.36 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.02 Total: -2.69 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.09 Total: -11.03 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 1.18 Total: -43.89 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.61 -8.75 -45.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588926787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.949 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds