Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36873 * 120.76816 * 2 1 4 4 C 1.40727 * 117.84407 * 179.73227 * 3 2 1 5 5 N 1.34178 * 120.39374 * 180.27686 * 4 3 2 6 6 C 1.32445 * 119.99993 * 175.38468 * 5 4 3 7 7 O 1.21690 * 120.00308 * 64.78773 * 6 5 4 8 8 C 1.50703 * 119.99989 * 244.79074 * 6 5 4 9 9 C 1.53000 * 109.47094 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47059 * 179.97438 * 9 8 6 11 11 C 1.52991 * 109.47181 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99452 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47296 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47129 * 119.99785 * 16 14 12 19 19 H 1.48501 * 109.47107 * 240.00062 * 16 14 12 20 20 N 1.35919 * 119.20826 * 0.56968 * 4 3 2 21 21 H 0.96999 * 119.25730 * 179.71355 * 20 4 3 22 22 N 1.28418 * 121.48521 * 359.68516 * 20 4 3 23 23 C 1.30540 * 122.40963 * 0.02607 * 22 20 4 24 24 C 1.50704 * 119.70692 * 180.02562 * 23 22 20 25 25 H 1.09002 * 109.46561 * 269.72381 * 1 2 3 26 26 H 1.08996 * 109.47586 * 149.72369 * 1 2 3 27 27 H 1.08995 * 109.47205 * 29.71826 * 1 2 3 28 28 H 1.08003 * 121.08068 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47150 * 299.99945 * 8 6 5 30 30 H 1.09002 * 109.47106 * 60.00004 * 8 6 5 31 31 H 1.08996 * 109.47046 * 300.00120 * 9 8 6 32 32 H 1.09002 * 109.46796 * 60.00236 * 9 8 6 33 33 H 1.09000 * 109.46805 * 300.00409 * 10 9 8 34 34 H 1.09000 * 109.46465 * 59.99967 * 10 9 8 35 35 H 1.09003 * 109.47272 * 300.00360 * 11 10 9 36 36 H 1.09004 * 109.47285 * 60.00084 * 11 10 9 37 37 H 0.97004 * 120.00036 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46852 * 269.98000 * 24 23 22 39 39 H 1.08996 * 109.47255 * 29.97480 * 24 23 22 40 40 H 1.08999 * 109.47322 * 149.97727 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1761 0.0000 4 6 3.6126 1.1043 0.0058 5 7 4.3496 2.2255 0.0117 6 6 5.6683 2.1507 0.1094 7 8 6.3157 1.6287 -0.7790 8 6 6.3672 2.7120 1.3209 9 6 7.8759 2.4971 1.1846 10 6 8.5854 3.0675 2.4143 11 6 10.0941 2.8532 2.2777 12 6 10.7929 3.4144 3.4892 13 1 10.2183 3.8773 4.2779 14 6 12.1658 3.3370 3.5907 15 7 12.8654 2.7729 2.6306 16 14 13.0319 4.0321 5.0927 17 1 12.0267 4.6084 6.0214 18 1 13.7773 2.9473 5.7805 19 1 13.9805 5.0936 4.6701 20 7 4.2145 -0.1143 -0.0007 21 1 5.1832 -0.1646 -0.0009 22 7 3.5297 -1.2006 -0.0059 23 6 2.2243 -1.2048 -0.0059 24 6 1.4816 -2.5161 -0.0117 25 1 -0.3632 -0.0050 1.0277 26 1 -0.3634 -0.8874 -0.5181 27 1 -0.3633 0.8924 -0.5094 28 1 1.6976 2.1283 -0.0004 29 1 6.1574 3.7787 1.3997 30 1 6.0076 2.2039 2.2157 31 1 8.0852 1.4303 1.1061 32 1 8.2358 3.0049 0.2898 33 1 8.3759 4.1343 2.4924 34 1 8.2255 2.5600 3.3093 35 1 10.3039 1.7864 2.1993 36 1 10.4537 3.3609 1.3827 37 1 13.8313 2.7188 2.7018 38 1 1.3022 -2.8275 -1.0408 39 1 2.0771 -3.2732 0.4984 40 1 0.5283 -2.3960 0.5030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588926787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = -5.946992 kcal Electronic energy + Delta-G solvation = -20250.826661 eV Core-core repulsion = 17065.243189 eV Total energy + Delta-G solvation = -3185.583471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.07813 -40.72949 -37.05472 -36.63953 -36.11083 -34.67195 -32.96612 -31.52998 -29.98143 -29.02700 -27.44531 -24.98433 -24.37617 -23.48299 -21.84344 -21.09002 -20.23665 -18.78087 -18.45827 -17.43076 -17.23566 -16.74864 -16.61309 -16.26106 -15.55680 -15.41201 -14.75116 -14.55206 -14.34595 -14.08559 -13.89059 -13.77300 -13.67691 -13.40892 -13.25267 -12.89023 -12.57302 -12.42152 -12.37956 -12.32790 -12.25365 -12.10229 -11.53156 -11.48164 -11.34149 -11.10853 -11.00200 -10.59634 -10.52850 -9.10450 -8.22362 -6.34973 -0.67646 0.03668 0.97257 1.37573 1.39123 1.39344 1.52784 2.08526 2.38988 2.83082 3.10034 3.11304 3.50162 3.58434 3.79383 3.93489 4.00105 4.33242 4.40201 4.50928 4.55419 4.67154 4.70154 4.72591 4.80490 4.84774 4.89908 5.00607 5.07916 5.10038 5.21505 5.23968 5.25581 5.33081 5.49797 5.54595 5.70435 5.82102 6.20851 6.27015 6.82637 6.88208 6.92046 7.34619 8.90243 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037414 B = 0.002528 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.209099 B =11075.228309 C =11200.152648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.013 4.013 3 C -0.136 4.136 4 C 0.411 3.589 5 N -0.671 5.671 6 C 0.495 3.505 7 O -0.571 6.571 8 C -0.132 4.132 9 C -0.097 4.097 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.065 0.935 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.972 3.028 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.278 1.278 20 N -0.453 5.453 21 H 0.438 0.562 22 N -0.257 5.257 23 C 0.079 3.921 24 C -0.094 4.094 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.060 0.940 35 H -0.013 1.013 36 H -0.015 1.015 37 H 0.264 0.736 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.569 -10.207 -3.619 36.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.022 4.022 3 C -0.165 4.165 4 C 0.158 3.842 5 N -0.424 5.424 6 C 0.285 3.715 7 O -0.450 6.450 8 C -0.171 4.171 9 C -0.135 4.135 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.796 3.204 17 H -0.182 1.182 18 H -0.202 1.202 19 H -0.203 1.203 20 N -0.180 5.180 21 H 0.283 0.717 22 N -0.078 5.078 23 C -0.094 4.094 24 C -0.152 4.152 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.206 0.794 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.005 0.995 36 H 0.003 0.997 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -33.330 -10.295 -4.177 35.133 hybrid contribution 1.888 0.637 0.270 2.011 sum -31.442 -9.658 -3.907 33.123 Atomic orbital electron populations 1.21155 0.84660 1.06265 1.05537 1.21410 1.00837 0.90556 0.89429 1.21504 0.87192 1.02417 1.05365 1.20839 0.95356 0.80874 0.87179 1.68653 1.07009 1.23153 1.43546 1.22022 0.87172 0.75332 0.86979 1.90758 1.71051 1.42471 1.40746 1.21780 0.94700 1.04494 0.96155 1.21301 0.93515 1.00413 0.98267 1.21445 0.95143 1.00152 0.96527 1.19046 0.92521 0.94703 0.95431 1.21753 0.92607 1.38124 1.05551 0.91715 1.26120 0.98696 0.95671 0.99967 1.70140 1.06935 1.45648 1.35076 0.85290 0.78349 0.78081 0.78656 1.18212 1.20208 1.20324 1.44193 1.11714 1.01941 1.60185 0.71701 1.71129 1.11378 1.12382 1.12862 1.22774 0.87553 0.99506 0.99525 1.20884 1.00110 0.88884 1.05311 0.87236 0.87532 0.88823 0.79416 0.87201 0.87274 0.93426 0.93803 0.92362 0.92171 0.99471 0.99678 0.92755 0.88155 0.90286 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 9.26 71.24 0.66 0.83 16 2 C -0.01 -0.11 5.91 -19.70 -0.12 -0.23 16 3 C -0.14 -1.97 9.80 22.56 0.22 -1.75 16 4 C 0.41 10.02 7.43 133.94 0.99 11.02 16 5 N -0.67 -20.74 10.42 -310.97 -3.24 -23.98 16 6 C 0.49 17.66 6.24 88.02 0.55 18.21 16 7 O -0.57 -24.16 15.65 -4.32 -0.07 -24.23 16 8 C -0.13 -4.36 5.77 29.85 0.17 -4.19 16 9 C -0.10 -3.97 4.50 30.60 0.14 -3.83 16 10 C -0.10 -4.28 5.15 30.59 0.16 -4.12 16 11 C 0.02 1.16 4.97 29.85 0.15 1.31 16 12 C -0.54 -32.72 9.11 25.60 0.23 -32.49 16 13 H 0.06 3.69 7.74 -2.91 -0.02 3.67 16 14 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 15 N -0.94 -60.40 13.29 21.45 0.28 -60.11 16 16 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 N -0.45 -11.16 6.08 -55.30 -0.34 -11.49 16 21 H 0.44 12.44 6.73 -220.02 -1.48 10.96 16 22 N -0.26 -5.04 11.34 -47.31 -0.54 -5.57 16 23 C 0.08 0.89 6.87 43.23 0.30 1.19 16 24 C -0.09 -0.24 9.42 71.24 0.67 0.43 16 25 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.11 -0.55 6.80 -2.39 -0.02 -0.57 16 27 H 0.09 -0.23 8.10 -2.39 -0.02 -0.25 16 28 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 32 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 37 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.12 -0.45 6.77 -2.39 -0.02 -0.47 16 Total: -1.00 -84.37 339.51 2.28 -82.09 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.44 Total: 8.79 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.59 Total: -13.61 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.83 Total: -101.16 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -84.37 2.28 -82.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588926787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.144 kcal (2) G-P(sol) polarization free energy of solvation -84.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds