Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38612 * 120.40810 * 2 1 4 4 C 1.38611 * 118.53503 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.40596 * 179.97438 * 4 3 2 6 6 N 1.32272 * 119.18720 * 359.97438 * 4 3 2 7 7 C 1.32402 * 120.74775 * 0.02562 * 6 4 3 8 8 N 1.38942 * 119.20075 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21261 * 119.99715 * 359.72774 * 9 8 7 11 11 C 1.50695 * 119.99635 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47469 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47257 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00282 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00039 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00143 * 19 17 15 21 21 H 1.48499 * 109.47135 * 209.99944 * 19 17 15 22 22 H 1.48501 * 109.47216 * 330.00286 * 19 17 15 23 23 N 1.32278 * 120.40468 * 180.28058 * 2 1 3 24 24 H 1.09006 * 109.46562 * 89.99900 * 1 2 3 25 25 H 1.08999 * 109.46859 * 209.99760 * 1 2 3 26 26 H 1.08999 * 109.46868 * 330.00172 * 1 2 3 27 27 H 1.08005 * 120.73157 * 0.04594 * 3 2 1 28 28 H 1.08995 * 109.47117 * 270.02219 * 5 4 3 29 29 H 1.09002 * 109.46881 * 30.02173 * 5 4 3 30 30 H 1.09002 * 109.46969 * 150.01763 * 5 4 3 31 31 H 0.96999 * 120.00132 * 359.97438 * 8 7 6 32 32 H 1.09005 * 109.47403 * 300.00056 * 11 9 8 33 33 H 1.09002 * 109.47422 * 60.00295 * 11 9 8 34 34 H 1.08997 * 109.47244 * 300.00535 * 12 11 9 35 35 H 1.09002 * 109.46787 * 59.99910 * 12 11 9 36 36 H 1.08997 * 109.47365 * 300.00556 * 13 12 11 37 37 H 1.09004 * 109.46747 * 59.99765 * 13 12 11 38 38 H 1.09005 * 109.47124 * 300.00323 * 14 13 12 39 39 H 1.09004 * 109.47330 * 60.00120 * 14 13 12 40 40 H 0.96990 * 120.00017 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3989 2.4243 -0.0011 6 7 4.2010 -0.0251 -0.0005 7 6 3.5006 -1.1487 -0.0005 8 7 4.1712 -2.3655 -0.0010 9 6 3.4742 -3.5192 -0.0005 10 8 2.2619 -3.4950 0.0054 11 6 4.2016 -4.8389 -0.0017 12 6 3.1845 -5.9819 -0.0001 13 6 3.9229 -7.3218 -0.0019 14 6 2.9058 -8.4647 -0.0010 15 6 3.6332 -9.7846 -0.0022 16 1 4.7130 -9.8060 -0.0038 17 6 2.9202 -10.9646 -0.0022 18 7 3.5550 -12.1165 -0.0027 19 14 1.0525 -10.9275 0.0000 20 1 0.5561 -10.9167 -1.3995 21 1 0.5343 -12.1304 0.6998 22 1 0.5825 -9.7058 0.7014 23 7 2.1765 -1.1408 -0.0056 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6874 2.1414 0.0007 28 1 4.5922 2.7315 -1.0289 29 1 3.8408 3.2068 0.5131 30 1 5.3457 2.2562 0.5121 31 1 5.1410 -2.3848 -0.0018 32 1 4.8261 -4.9089 -0.8924 33 1 4.8281 -4.9094 0.8876 34 1 2.5604 -5.9117 0.8908 35 1 2.5577 -5.9116 -0.8891 36 1 4.5467 -7.3918 -0.8930 37 1 4.5500 -7.3923 0.8869 38 1 2.2817 -8.3950 0.8899 39 1 2.2791 -8.3941 -0.8901 40 1 3.0534 -12.9467 -0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589744340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = 0.367367 kcal Electronic energy + Delta-G solvation = -20269.754552 eV Core-core repulsion = 17084.444891 eV Total energy + Delta-G solvation = -3185.309660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56660 -39.65896 -35.64385 -35.10466 -34.87219 -32.70025 -32.20084 -30.12976 -29.68390 -27.78217 -26.31260 -24.00759 -22.36947 -21.87296 -20.21681 -20.03510 -18.23146 -17.57026 -16.65996 -16.32403 -16.23572 -15.81562 -15.38551 -14.43551 -14.19622 -14.13662 -13.87400 -13.80003 -13.39674 -13.09678 -12.88469 -12.65735 -12.42162 -12.37914 -12.14653 -11.76727 -11.37291 -11.12997 -10.84025 -10.75279 -10.55220 -10.52878 -10.05375 -9.83921 -9.64799 -9.49945 -9.17073 -9.11322 -8.87390 -8.48468 -5.99669 -3.97170 0.68926 0.85582 2.35377 2.54574 3.36190 3.43176 3.49240 3.60922 3.72058 4.02871 4.23706 4.50938 4.71529 4.78971 4.88853 4.97626 5.10027 5.16087 5.21021 5.23923 5.28163 5.35154 5.41065 5.50305 5.67310 5.71965 5.87180 6.00331 6.11314 6.31060 6.40017 6.66738 6.78329 6.83019 6.93295 6.99516 7.38503 7.51258 7.85427 7.93397 8.12748 8.59060 9.05328 9.63668 11.13807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036520 B = 0.002726 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.517613 B =10267.898072 C =10992.757723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.205 3.795 3 C -0.269 4.269 4 C 0.205 3.795 5 C -0.104 4.104 6 N -0.559 5.559 7 C 0.547 3.453 8 N -0.646 5.646 9 C 0.505 3.495 10 O -0.462 6.462 11 C -0.133 4.133 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 N -0.508 5.508 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.423 0.577 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 31.776 0.001 31.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.057 3.943 3 C -0.293 4.293 4 C 0.058 3.942 5 C -0.162 4.162 6 N -0.281 5.281 7 C 0.192 3.808 8 N -0.296 5.296 9 C 0.292 3.708 10 O -0.328 6.328 11 C -0.173 4.173 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 N -0.230 5.230 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.260 0.740 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.610 30.563 0.004 30.569 hybrid contribution -0.729 0.652 -0.051 0.980 sum -1.340 31.215 -0.047 31.244 Atomic orbital electron populations 1.20790 0.87627 1.04127 1.03784 1.21736 0.97666 0.87315 0.87547 1.22403 0.95463 1.00467 1.10981 1.21425 0.91473 0.92847 0.88493 1.20778 1.00160 0.91522 1.03713 1.67619 1.41293 0.97743 1.21477 1.19523 0.85635 0.85930 0.89761 1.43585 1.11309 1.02380 1.72347 1.21480 0.88716 0.84862 0.75777 1.90814 1.13409 1.86283 1.42297 1.21813 1.00347 0.90395 1.04784 1.21521 0.96936 0.92927 1.03126 1.21472 0.98799 0.92660 1.01056 1.19577 0.95194 0.94178 0.96350 1.21179 0.95070 0.88966 1.50496 0.91090 1.25048 0.98483 0.95492 0.94627 1.69921 1.35744 0.97380 1.51483 0.86772 0.86300 0.77683 0.78532 1.20328 1.21471 1.18883 1.68367 1.06801 1.29784 1.18022 0.89580 0.89544 0.90135 0.83690 0.89621 0.89980 0.89911 0.73961 0.88429 0.88415 0.91587 0.91608 0.92758 0.92726 0.96593 0.97031 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.22 36.01 0.37 -0.49 16 2 C 0.20 2.30 6.82 -82.26 -0.56 1.74 16 3 C -0.27 -2.36 9.53 -39.31 -0.37 -2.73 16 4 C 0.20 1.92 6.82 -82.26 -0.56 1.36 16 5 C -0.10 -0.55 10.22 36.01 0.37 -0.18 16 6 N -0.56 -6.63 10.39 -10.06 -0.10 -6.73 16 7 C 0.55 7.48 8.38 -322.25 -2.70 4.78 16 8 N -0.65 -7.74 5.40 -13.07 -0.07 -7.81 16 9 C 0.51 7.12 7.79 -10.98 -0.09 7.04 16 10 O -0.46 -8.35 14.18 5.57 0.08 -8.27 16 11 C -0.13 -1.65 5.70 -27.88 -0.16 -1.81 16 12 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 13 C -0.10 -1.99 5.15 -26.74 -0.14 -2.13 16 14 C -0.02 -0.38 4.04 -27.89 -0.11 -0.50 16 15 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 19 Si 0.88 22.43 27.47 -169.99 -4.67 17.77 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 23 N -0.51 -7.49 7.81 -10.05 -0.08 -7.57 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.42 3.62 8.81 -40.82 -0.36 3.26 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -36.64 339.74 -9.66 -46.30 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.20 Total: -2.68 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -4.51 Total: -8.42 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.52 Total: -49.81 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.64 -9.66 -46.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589744340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.669 kcal (2) G-P(sol) polarization free energy of solvation -36.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds