Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38612 * 120.40810 * 2 1 4 4 C 1.38611 * 118.53503 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.40596 * 179.97438 * 4 3 2 6 6 N 1.32272 * 119.18720 * 359.97438 * 4 3 2 7 7 C 1.32402 * 120.74775 * 0.02562 * 6 4 3 8 8 N 1.38942 * 119.20075 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21261 * 119.99715 * 359.72774 * 9 8 7 11 11 C 1.50695 * 119.99635 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47469 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47257 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00282 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00039 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00143 * 19 17 15 21 21 H 1.48499 * 109.47135 * 209.99944 * 19 17 15 22 22 H 1.48501 * 109.47216 * 330.00286 * 19 17 15 23 23 N 1.32278 * 120.40468 * 180.28058 * 2 1 3 24 24 H 1.09006 * 109.46562 * 89.99900 * 1 2 3 25 25 H 1.08999 * 109.46859 * 209.99760 * 1 2 3 26 26 H 1.08999 * 109.46868 * 330.00172 * 1 2 3 27 27 H 1.08005 * 120.73157 * 0.04594 * 3 2 1 28 28 H 1.08995 * 109.47117 * 270.02219 * 5 4 3 29 29 H 1.09002 * 109.46881 * 30.02173 * 5 4 3 30 30 H 1.09002 * 109.46969 * 150.01763 * 5 4 3 31 31 H 0.96999 * 120.00132 * 359.97438 * 8 7 6 32 32 H 1.09005 * 109.47403 * 300.00056 * 11 9 8 33 33 H 1.09002 * 109.47422 * 60.00295 * 11 9 8 34 34 H 1.08997 * 109.47244 * 300.00535 * 12 11 9 35 35 H 1.09002 * 109.46787 * 59.99910 * 12 11 9 36 36 H 1.08997 * 109.47365 * 300.00556 * 13 12 11 37 37 H 1.09004 * 109.46747 * 59.99765 * 13 12 11 38 38 H 1.09005 * 109.47124 * 300.00323 * 14 13 12 39 39 H 1.09004 * 109.47330 * 60.00120 * 14 13 12 40 40 H 0.96990 * 120.00017 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3989 2.4243 -0.0011 6 7 4.2010 -0.0251 -0.0005 7 6 3.5006 -1.1487 -0.0005 8 7 4.1712 -2.3655 -0.0010 9 6 3.4742 -3.5192 -0.0005 10 8 2.2619 -3.4950 0.0054 11 6 4.2016 -4.8389 -0.0017 12 6 3.1845 -5.9819 -0.0001 13 6 3.9229 -7.3218 -0.0019 14 6 2.9058 -8.4647 -0.0010 15 6 3.6332 -9.7846 -0.0022 16 1 4.7130 -9.8060 -0.0038 17 6 2.9202 -10.9646 -0.0022 18 7 3.5550 -12.1165 -0.0027 19 14 1.0525 -10.9275 0.0000 20 1 0.5561 -10.9167 -1.3995 21 1 0.5343 -12.1304 0.6998 22 1 0.5825 -9.7058 0.7014 23 7 2.1765 -1.1408 -0.0056 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6874 2.1414 0.0007 28 1 4.5922 2.7315 -1.0289 29 1 3.8408 3.2068 0.5131 30 1 5.3457 2.2562 0.5121 31 1 5.1410 -2.3848 -0.0018 32 1 4.8261 -4.9089 -0.8924 33 1 4.8281 -4.9094 0.8876 34 1 2.5604 -5.9117 0.8908 35 1 2.5577 -5.9116 -0.8891 36 1 4.5467 -7.3918 -0.8930 37 1 4.5500 -7.3923 0.8869 38 1 2.2817 -8.3950 0.8899 39 1 2.2791 -8.3941 -0.8901 40 1 3.0534 -12.9467 -0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589744340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -22.611178 kcal Electronic energy + Delta-G solvation = -20270.750976 eV Core-core repulsion = 17084.444891 eV Total energy + Delta-G solvation = -3186.306085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.40240 -40.67874 -36.86960 -36.29583 -35.76390 -34.62114 -33.19188 -31.75536 -30.36344 -28.39693 -27.88683 -25.22393 -23.41265 -23.06972 -21.73205 -21.19496 -19.11879 -18.86060 -18.43262 -17.38676 -17.24279 -16.49224 -16.41554 -16.33386 -15.46157 -15.37748 -14.80777 -14.64834 -14.32932 -14.08727 -14.01350 -13.73572 -13.55586 -13.52045 -13.32945 -12.97140 -12.86085 -12.38163 -12.16278 -12.08906 -11.75816 -11.70179 -11.50961 -11.34023 -11.32439 -11.25954 -10.95517 -10.75798 -10.05723 -9.69556 -8.29519 -6.32425 -0.13000 0.10265 1.34716 1.36189 1.47860 1.49117 1.54163 2.35935 2.78437 2.99176 3.05874 3.29044 3.50964 3.80581 3.99279 4.12768 4.13475 4.29143 4.45309 4.57911 4.63214 4.67177 4.70264 4.74377 4.77265 4.82705 4.87130 4.91670 5.11373 5.12819 5.19055 5.20147 5.28259 5.56474 5.60793 5.66058 5.68943 6.00274 6.13676 6.29896 6.75681 6.97300 7.26636 7.32344 8.87039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036520 B = 0.002726 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.517613 B =10267.898072 C =10992.757723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.178 3.822 3 C -0.254 4.254 4 C 0.191 3.809 5 C -0.099 4.099 6 N -0.567 5.567 7 C 0.520 3.480 8 N -0.635 5.635 9 C 0.509 3.491 10 O -0.510 6.510 11 C -0.122 4.122 12 C -0.098 4.098 13 C -0.093 4.093 14 C -0.018 4.018 15 C -0.529 4.529 16 H 0.038 0.962 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.252 1.252 23 N -0.552 5.552 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.186 0.814 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.436 0.564 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 34.902 -0.040 34.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.033 3.967 3 C -0.277 4.277 4 C 0.045 3.955 5 C -0.156 4.156 6 N -0.290 5.290 7 C 0.164 3.836 8 N -0.287 5.287 9 C 0.297 3.703 10 O -0.380 6.380 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.131 4.131 14 C -0.055 4.055 15 C -0.567 4.567 16 H 0.056 0.944 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.176 1.176 23 N -0.275 5.275 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.203 0.797 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.277 0.723 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.092 33.742 -0.037 33.760 hybrid contribution -0.490 -0.226 -0.041 0.541 sum -1.581 33.516 -0.078 33.553 Atomic orbital electron populations 1.20861 0.85981 1.04638 1.04400 1.22334 0.99016 0.87542 0.87839 1.22814 0.95338 1.01127 1.08444 1.22254 0.92527 0.93381 0.87374 1.20907 0.99852 0.89984 1.04902 1.67707 1.41419 0.98102 1.21774 1.19754 0.85867 0.86732 0.91219 1.43368 1.11905 1.01752 1.71695 1.21671 0.88165 0.85746 0.74765 1.90796 1.15379 1.86999 1.44834 1.21712 0.99292 0.87818 1.07380 1.21301 0.97366 0.92886 1.02024 1.21327 0.97781 0.92406 1.01573 1.19580 0.96046 0.93761 0.96114 1.21546 0.94007 0.91327 1.49850 0.94398 1.26000 1.03969 0.95067 0.94354 1.70061 1.37930 0.98234 1.52944 0.85695 0.79770 0.78265 0.79155 1.19254 1.20767 1.17595 1.68318 1.07685 1.31977 1.19484 0.88820 0.91759 0.86811 0.79719 0.88251 0.87264 0.90075 0.72297 0.85766 0.85782 0.92819 0.92753 0.92227 0.92251 0.96798 0.96889 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.22 71.24 0.73 -0.81 16 2 C 0.18 3.86 6.82 42.58 0.29 4.15 16 3 C -0.25 -3.80 9.53 22.45 0.21 -3.59 16 4 C 0.19 3.16 6.82 42.58 0.29 3.45 16 5 C -0.10 -0.72 10.22 71.24 0.73 0.01 16 6 N -0.57 -12.86 10.39 -185.73 -1.93 -14.79 16 7 C 0.52 14.13 8.38 261.29 2.19 16.32 16 8 N -0.64 -14.90 5.40 -313.66 -1.69 -16.60 16 9 C 0.51 14.14 7.79 87.65 0.68 14.82 16 10 O -0.51 -18.84 14.18 -2.97 -0.04 -18.88 16 11 C -0.12 -2.81 5.70 29.85 0.17 -2.64 16 12 C -0.10 -3.15 4.50 30.59 0.14 -3.01 16 13 C -0.09 -3.55 5.15 30.59 0.16 -3.40 16 14 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 15 C -0.53 -31.30 9.66 25.60 0.25 -31.05 16 16 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 17 C 0.00 0.16 5.47 84.65 0.46 0.62 16 18 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 19 Si 0.95 46.30 27.47 68.60 1.88 48.18 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.25 -11.73 6.54 99.48 0.65 -11.08 16 23 N -0.55 -16.45 7.81 -185.72 -1.45 -17.90 16 24 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.11 0.88 8.09 -2.39 -0.02 0.86 16 27 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.11 0.22 8.10 -2.39 -0.02 0.20 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.44 7.00 8.81 -92.71 -0.82 6.18 16 32 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.85 8.10 -2.39 -0.02 1.84 16 35 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.01 0.67 7.20 -2.38 -0.02 0.66 16 39 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 40 H 0.27 15.87 8.31 -92.72 -0.77 15.10 16 Total: -1.00 -82.57 339.74 3.65 -78.93 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.16 Total: 7.49 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 6.42 Total: -5.86 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.78 Total: -109.86 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.04 Total: -18.88 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.18 kcal Total: -82.57 3.65 -78.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589744340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.314 kcal (2) G-P(sol) polarization free energy of solvation -82.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds