Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31781 * 119.08584 * 2 1 4 4 C 1.32551 * 121.01169 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.39961 * 179.97438 * 4 3 2 6 6 C 1.38117 * 119.20129 * 359.97438 * 4 3 2 7 7 C 1.50693 * 120.83688 * 179.97438 * 6 4 3 8 8 C 1.39631 * 118.32816 * 0.02562 * 6 4 3 9 9 N 1.38547 * 120.52941 * 180.02562 * 8 6 4 10 10 C 1.48533 * 111.00199 * 99.56775 * 9 8 6 11 11 C 1.54929 * 103.22956 * 159.72124 * 10 9 8 12 12 C 1.54603 * 102.92221 * 322.58910 * 11 10 9 13 13 O 1.42900 * 110.30860 * 263.04027 * 12 11 10 14 14 C 1.50702 * 110.39435 * 140.91384 * 12 11 10 15 15 H 1.07995 * 119.99754 * 239.14294 * 14 12 11 16 16 C 1.37871 * 119.99818 * 59.13888 * 14 12 11 17 17 N 1.31516 * 120.00103 * 352.58025 * 16 14 12 18 18 Si 1.86803 * 119.99773 * 172.57666 * 16 14 12 19 19 H 1.48498 * 109.46695 * 94.97159 * 18 16 14 20 20 H 1.48498 * 109.46990 * 214.97026 * 18 16 14 21 21 H 1.48501 * 109.47344 * 334.97163 * 18 16 14 22 22 C 1.47892 * 111.00048 * 216.96809 * 9 8 6 23 23 N 1.31750 * 119.08114 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47145 * 270.00059 * 1 2 3 25 25 H 1.09004 * 109.46874 * 30.00308 * 1 2 3 26 26 H 1.09005 * 109.47277 * 150.00260 * 1 2 3 27 27 H 1.08997 * 109.46912 * 270.01677 * 5 4 3 28 28 H 1.08998 * 109.47498 * 30.02076 * 5 4 3 29 29 H 1.09006 * 109.47057 * 150.01927 * 5 4 3 30 30 H 1.09005 * 109.46809 * 274.94155 * 7 6 4 31 31 H 1.08999 * 109.47264 * 34.94262 * 7 6 4 32 32 H 1.08996 * 109.47239 * 154.94684 * 7 6 4 33 33 H 1.09003 * 110.66793 * 278.15932 * 10 9 8 34 34 H 1.08999 * 110.66544 * 41.28681 * 10 9 8 35 35 H 1.08994 * 110.72840 * 204.23493 * 11 10 9 36 36 H 1.08999 * 110.87804 * 81.01022 * 11 10 9 37 37 H 0.96696 * 114.00119 * 295.71667 * 13 12 11 38 38 H 0.97005 * 119.99386 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.91670 * 333.51062 * 22 9 8 40 40 H 1.08999 * 109.92015 * 94.79681 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0005 5 6 4.1909 2.5209 -0.0011 6 6 4.1864 0.0139 -0.0005 7 6 5.6933 0.0215 -0.0017 8 6 3.4768 -1.1887 -0.0005 9 7 4.1469 -2.4013 0.0000 10 6 4.2021 -2.9784 1.3675 11 6 4.4769 -4.4808 1.1075 12 6 3.6415 -4.7707 -0.1606 13 8 2.3805 -5.3406 0.1957 14 6 4.3913 -5.6970 -1.0830 15 1 4.6283 -5.3823 -2.0886 16 6 4.7748 -6.9461 -0.6431 17 7 4.6177 -7.2751 0.6205 18 14 5.5174 -8.1712 -1.8420 19 1 6.9987 -8.0850 -1.7836 20 1 5.0867 -9.5446 -1.4765 21 1 5.0571 -7.8579 -3.2186 22 6 3.4381 -3.3990 -0.8303 23 7 2.1474 -1.1514 0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 4.3634 2.8402 -1.0289 28 1 3.5822 3.2647 0.5131 29 1 5.1468 2.4160 0.5121 30 1 6.0554 0.1114 -1.0259 31 1 6.0528 0.8660 0.5863 32 1 6.0617 -0.9074 0.4336 33 1 5.0147 -2.5322 1.9409 34 1 3.2496 -2.8447 1.8802 35 1 4.1303 -5.0869 1.9445 36 1 5.5364 -4.6550 0.9195 37 1 2.4464 -6.2061 0.6219 38 1 4.8872 -8.1542 0.9298 39 1 2.3754 -3.1599 -0.8717 40 1 3.8580 -3.4108 -1.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = 4.735620 kcal Electronic energy + Delta-G solvation = -22217.978635 eV Core-core repulsion = 19032.858397 eV Total energy + Delta-G solvation = -3185.120239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13957 -38.42547 -35.32059 -34.89151 -32.66997 -32.16927 -30.07495 -29.16398 -28.75686 -28.07507 -25.48520 -24.62270 -22.38039 -21.38294 -20.45507 -19.51896 -17.78622 -17.03812 -16.43661 -15.34728 -14.86683 -14.60401 -14.26702 -14.08772 -13.87289 -13.60481 -13.37673 -12.98992 -12.78729 -12.71826 -12.26988 -12.24412 -12.11829 -11.98902 -11.79191 -11.50928 -11.36570 -11.03448 -10.80406 -10.64979 -10.48752 -10.41563 -10.05210 -9.97704 -9.10251 -9.01227 -8.82242 -8.66423 -8.15107 -8.05100 -6.19857 -4.27193 1.12218 1.25247 3.23027 3.30992 3.36103 3.82943 3.97665 4.09227 4.31382 4.38746 4.99100 5.01520 5.08356 5.18191 5.35033 5.42880 5.53685 5.59426 5.62799 5.74781 5.75484 5.85356 5.88152 5.93823 6.03058 6.10643 6.14735 6.29849 6.36138 6.56432 6.73048 6.87131 6.95181 7.13203 7.30317 7.49078 7.57551 7.68480 7.80760 8.14376 8.38363 8.74837 9.38097 9.43246 10.85888 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004912 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.773707 B = 5698.419937 C = 6178.755633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.321 3.679 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.103 4.103 6 C -0.182 4.182 7 C -0.095 4.095 8 C 0.355 3.645 9 N -0.466 5.466 10 C 0.042 3.958 11 C -0.109 4.109 12 C 0.246 3.754 13 O -0.588 6.588 14 C -0.531 4.531 15 H 0.062 0.938 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.052 3.948 23 N -0.543 5.543 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.377 0.623 38 H 0.265 0.735 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 14.574 1.256 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.251 5.251 4 C 0.024 3.976 5 C -0.160 4.160 6 C -0.188 4.188 7 C -0.153 4.153 8 C 0.117 3.883 9 N -0.189 5.189 10 C -0.084 4.084 11 C -0.147 4.147 12 C 0.206 3.794 13 O -0.396 6.396 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.074 4.074 23 N -0.261 5.261 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.282 15.060 0.917 15.142 hybrid contribution 0.802 -1.482 -0.103 1.689 sum -0.479 13.578 0.813 13.611 Atomic orbital electron populations 1.20515 0.86147 1.03809 1.03532 1.22981 0.97781 0.83056 0.90944 1.68042 1.09379 1.30464 1.17208 1.21418 0.89371 0.95349 0.91454 1.20750 0.99757 0.92113 1.03372 1.21127 0.99113 0.92579 1.05953 1.20557 0.89034 1.03265 1.02413 1.20526 0.86718 0.92925 0.88164 1.62762 1.44454 1.00660 1.11032 1.23409 0.99692 0.98190 0.87087 1.22966 1.02126 0.89509 1.00133 1.19308 0.81263 0.88472 0.90398 1.86176 1.32375 1.38616 1.82417 1.21643 1.36119 0.99792 0.99379 0.92017 1.25006 0.94794 0.98261 0.95187 1.69854 1.48239 1.21469 1.13697 0.86488 0.79132 0.80365 0.81493 1.20645 1.21052 1.19753 1.22940 0.97766 0.90443 0.96228 1.68417 1.10409 1.30849 1.16430 0.90020 0.90025 0.89686 0.89972 0.90346 0.90020 0.91020 0.91798 0.89942 0.91216 0.93806 0.90969 0.90829 0.77489 0.92484 0.91305 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.32 36.01 0.37 -0.67 16 2 C 0.32 5.38 7.64 -157.24 -1.20 4.17 16 3 N -0.53 -8.49 10.27 -7.07 -0.07 -8.56 16 4 C 0.17 2.45 6.82 -82.32 -0.56 1.89 16 5 C -0.10 -1.00 9.83 36.01 0.35 -0.65 16 6 C -0.18 -2.87 5.93 -104.15 -0.62 -3.48 16 7 C -0.10 -1.21 9.41 36.00 0.34 -0.87 16 8 C 0.35 6.72 5.55 -154.77 -0.86 5.86 16 9 N -0.47 -9.47 4.28 -169.07 -0.72 -10.19 16 10 C 0.04 0.84 6.50 -1.90 -0.01 0.83 16 11 C -0.11 -2.51 5.04 -24.87 -0.13 -2.64 16 12 C 0.25 6.14 1.00 -90.41 -0.09 6.05 16 13 O -0.59 -15.35 12.93 -35.23 -0.46 -15.81 16 14 C -0.53 -14.22 8.12 -34.44 -0.28 -14.50 16 15 H 0.06 1.66 7.36 -52.49 -0.39 1.28 16 16 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 17 N -0.89 -23.54 10.93 55.43 0.61 -22.94 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.05 1.21 6.07 -2.76 -0.02 1.19 16 23 N -0.54 -10.48 8.71 -9.96 -0.09 -10.57 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.65 6.15 -51.93 -0.32 0.33 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.63 6.28 -51.93 -0.33 0.30 16 32 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.92 7.99 -51.93 -0.42 0.50 16 35 H 0.07 1.73 7.85 -51.93 -0.41 1.32 16 36 H 0.07 1.79 7.86 -51.93 -0.41 1.39 16 37 H 0.38 9.76 7.74 45.56 0.35 10.11 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.07 1.65 6.41 -51.93 -0.33 1.32 16 40 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -29.31 323.19 -8.78 -38.09 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.11 Total: 10.62 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.79 Total: -1.09 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.28 Total: -52.26 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.31 -8.78 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.827 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds