Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31781 * 119.08584 * 2 1 4 4 C 1.32551 * 121.01169 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.39961 * 179.97438 * 4 3 2 6 6 C 1.38117 * 119.20129 * 359.97438 * 4 3 2 7 7 C 1.50693 * 120.83688 * 179.97438 * 6 4 3 8 8 C 1.39631 * 118.32816 * 0.02562 * 6 4 3 9 9 N 1.38547 * 120.52941 * 180.02562 * 8 6 4 10 10 C 1.48533 * 111.00199 * 99.56775 * 9 8 6 11 11 C 1.54929 * 103.22956 * 159.72124 * 10 9 8 12 12 C 1.54603 * 102.92221 * 322.58910 * 11 10 9 13 13 O 1.42900 * 110.30860 * 263.04027 * 12 11 10 14 14 C 1.50702 * 110.39435 * 140.91384 * 12 11 10 15 15 H 1.07995 * 119.99754 * 239.14294 * 14 12 11 16 16 C 1.37871 * 119.99818 * 59.13888 * 14 12 11 17 17 N 1.31516 * 120.00103 * 352.58025 * 16 14 12 18 18 Si 1.86803 * 119.99773 * 172.57666 * 16 14 12 19 19 H 1.48498 * 109.46695 * 94.97159 * 18 16 14 20 20 H 1.48498 * 109.46990 * 214.97026 * 18 16 14 21 21 H 1.48501 * 109.47344 * 334.97163 * 18 16 14 22 22 C 1.47892 * 111.00048 * 216.96809 * 9 8 6 23 23 N 1.31750 * 119.08114 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47145 * 270.00059 * 1 2 3 25 25 H 1.09004 * 109.46874 * 30.00308 * 1 2 3 26 26 H 1.09005 * 109.47277 * 150.00260 * 1 2 3 27 27 H 1.08997 * 109.46912 * 270.01677 * 5 4 3 28 28 H 1.08998 * 109.47498 * 30.02076 * 5 4 3 29 29 H 1.09006 * 109.47057 * 150.01927 * 5 4 3 30 30 H 1.09005 * 109.46809 * 274.94155 * 7 6 4 31 31 H 1.08999 * 109.47264 * 34.94262 * 7 6 4 32 32 H 1.08996 * 109.47239 * 154.94684 * 7 6 4 33 33 H 1.09003 * 110.66793 * 278.15932 * 10 9 8 34 34 H 1.08999 * 110.66544 * 41.28681 * 10 9 8 35 35 H 1.08994 * 110.72840 * 204.23493 * 11 10 9 36 36 H 1.08999 * 110.87804 * 81.01022 * 11 10 9 37 37 H 0.96696 * 114.00119 * 295.71667 * 13 12 11 38 38 H 0.97005 * 119.99386 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.91670 * 333.51062 * 22 9 8 40 40 H 1.08999 * 109.92015 * 94.79681 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0005 5 6 4.1909 2.5209 -0.0011 6 6 4.1864 0.0139 -0.0005 7 6 5.6933 0.0215 -0.0017 8 6 3.4768 -1.1887 -0.0005 9 7 4.1469 -2.4013 0.0000 10 6 4.2021 -2.9784 1.3675 11 6 4.4769 -4.4808 1.1075 12 6 3.6415 -4.7707 -0.1606 13 8 2.3805 -5.3406 0.1957 14 6 4.3913 -5.6970 -1.0830 15 1 4.6283 -5.3823 -2.0886 16 6 4.7748 -6.9461 -0.6431 17 7 4.6177 -7.2751 0.6205 18 14 5.5174 -8.1712 -1.8420 19 1 6.9987 -8.0850 -1.7836 20 1 5.0867 -9.5446 -1.4765 21 1 5.0571 -7.8579 -3.2186 22 6 3.4381 -3.3990 -0.8303 23 7 2.1474 -1.1514 0.0005 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 4.3634 2.8402 -1.0289 28 1 3.5822 3.2647 0.5131 29 1 5.1468 2.4160 0.5121 30 1 6.0554 0.1114 -1.0259 31 1 6.0528 0.8660 0.5863 32 1 6.0617 -0.9074 0.4336 33 1 5.0147 -2.5322 1.9409 34 1 3.2496 -2.8447 1.8802 35 1 4.1303 -5.0869 1.9445 36 1 5.5364 -4.6550 0.9195 37 1 2.4464 -6.2061 0.6219 38 1 4.8872 -8.1542 0.9298 39 1 2.3754 -3.1599 -0.8717 40 1 3.8580 -3.4108 -1.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -14.711503 kcal Electronic energy + Delta-G solvation = -22218.821926 eV Core-core repulsion = 19032.858397 eV Total energy + Delta-G solvation = -3185.963529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43119 -40.10718 -37.09416 -36.01401 -34.25919 -34.14246 -31.20308 -30.66874 -30.07563 -29.68608 -26.95734 -26.19737 -23.84936 -22.56276 -22.05493 -21.36712 -19.24961 -18.92712 -17.94535 -16.89231 -16.57072 -16.12146 -15.92138 -15.66053 -15.14486 -14.91421 -14.52602 -14.32400 -14.18411 -13.92398 -13.68241 -13.48975 -13.44489 -13.31234 -13.23248 -12.97474 -12.85808 -12.69221 -12.58411 -12.34538 -12.25006 -12.02740 -11.82474 -11.37933 -10.98559 -10.69633 -10.33927 -10.15520 -10.07395 -9.60545 -8.21316 -6.36414 -0.14154 0.01660 1.40366 1.43553 1.53594 2.39086 2.53062 2.61298 2.99841 3.03599 3.14720 3.73828 3.82883 3.93561 4.06451 4.16528 4.25198 4.31890 4.38310 4.56881 4.61709 4.64558 4.67867 4.73962 4.80981 4.87065 4.92316 4.97209 5.05845 5.12172 5.16590 5.28071 5.31339 5.55240 5.57746 5.64544 5.75079 6.03341 6.12534 6.16351 6.67064 7.12619 7.31799 7.36354 8.83142 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004912 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.773707 B = 5698.419937 C = 6178.755633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.306 3.694 3 N -0.537 5.537 4 C 0.170 3.830 5 C -0.099 4.099 6 C -0.181 4.181 7 C -0.092 4.092 8 C 0.318 3.682 9 N -0.458 5.458 10 C 0.053 3.947 11 C -0.096 4.096 12 C 0.233 3.767 13 O -0.597 6.597 14 C -0.558 4.558 15 H 0.051 0.949 16 C 0.034 3.966 17 N -0.906 5.906 18 Si 0.958 3.042 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.276 1.276 22 C 0.063 3.937 23 N -0.577 5.577 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.373 0.627 38 H 0.269 0.731 39 H 0.053 0.947 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 16.570 1.246 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.037 3.963 3 N -0.253 5.253 4 C 0.024 3.976 5 C -0.156 4.156 6 C -0.187 4.187 7 C -0.150 4.150 8 C 0.082 3.918 9 N -0.181 5.181 10 C -0.072 4.072 11 C -0.135 4.135 12 C 0.193 3.807 13 O -0.405 6.405 14 C -0.596 4.596 15 H 0.069 0.931 16 C -0.167 4.167 17 N -0.545 5.545 18 Si 0.783 3.217 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.064 4.064 23 N -0.296 5.296 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.221 0.779 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.245 17.069 0.913 17.095 hybrid contribution 0.447 -2.012 -0.092 2.063 sum 0.202 15.057 0.820 15.080 Atomic orbital electron populations 1.20608 0.83955 1.04505 1.04559 1.23624 0.99273 0.82722 0.90661 1.68183 1.10261 1.29788 1.17061 1.22235 0.89056 0.96943 0.89339 1.20922 1.00325 0.89403 1.04931 1.21462 1.00699 0.91693 1.04841 1.20636 0.86797 1.03975 1.03552 1.20692 0.87250 0.93053 0.90817 1.62729 1.44335 1.00643 1.10355 1.23275 1.00036 0.96288 0.87649 1.22689 1.00538 0.91553 0.98700 1.19510 0.80909 0.89055 0.91224 1.86172 1.33382 1.38463 1.82464 1.21824 1.37348 1.01059 0.99369 0.93060 1.25640 0.94984 0.99438 0.96664 1.69930 1.48113 1.21838 1.14637 0.85556 0.78566 0.78289 0.79253 1.19933 1.20422 1.20067 1.22675 0.97040 0.90411 0.96240 1.68341 1.10998 1.32478 1.17764 0.88719 0.87962 0.90274 0.88185 0.89397 0.87652 0.90031 0.88240 0.91564 0.88351 0.94980 0.92397 0.92333 0.77868 0.92173 0.92843 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.32 71.24 0.73 -1.19 16 2 C 0.31 10.05 7.64 138.77 1.06 11.11 16 3 N -0.54 -16.08 10.27 -176.28 -1.81 -17.89 16 4 C 0.17 4.48 6.82 42.42 0.29 4.77 16 5 C -0.10 -1.52 9.83 71.24 0.70 -0.82 16 6 C -0.18 -5.39 5.93 -19.56 -0.12 -5.50 16 7 C -0.09 -2.09 9.41 71.23 0.67 -1.42 16 8 C 0.32 12.02 5.55 133.16 0.74 12.76 16 9 N -0.46 -18.81 4.28 -688.81 -2.95 -21.76 16 10 C 0.05 2.16 6.50 86.65 0.56 2.72 16 11 C -0.10 -4.55 5.04 31.80 0.16 -4.39 16 12 C 0.23 12.00 1.00 -10.66 -0.01 11.99 16 13 O -0.60 -32.33 12.93 -148.98 -1.93 -34.26 16 14 C -0.56 -30.62 8.12 25.60 0.21 -30.41 16 15 H 0.05 2.84 7.36 -2.91 -0.02 2.82 16 16 C 0.03 1.79 5.21 84.65 0.44 2.23 16 17 N -0.91 -48.23 10.93 21.45 0.23 -47.99 16 18 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.06 3.02 6.07 86.45 0.52 3.55 16 23 N -0.58 -22.51 8.71 -185.44 -1.62 -24.13 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.14 6.15 -2.38 -0.01 1.12 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.10 1.52 6.28 -2.39 -0.01 1.50 16 32 H 0.07 1.74 7.42 -2.39 -0.02 1.72 16 33 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.03 1.37 7.99 -2.39 -0.02 1.35 16 35 H 0.06 2.86 7.85 -2.39 -0.02 2.84 16 36 H 0.06 2.91 7.86 -2.39 -0.02 2.90 16 37 H 0.37 20.09 7.74 -74.06 -0.57 19.51 16 38 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 39 H 0.05 2.68 6.41 -2.39 -0.02 2.66 16 40 H 0.07 3.33 7.39 -2.39 -0.02 3.32 16 Total: -1.00 -64.38 323.19 0.41 -63.97 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.48 Total: 32.26 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.96 Total: 5.40 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -6.14 Total: -111.77 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.93 Total: -34.26 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -64.38 0.41 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.262 kcal (2) G-P(sol) polarization free energy of solvation -64.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds