Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 120.00301 * 2 1 4 4 N 1.32127 * 119.99487 * 179.97438 * 3 2 1 5 5 C 1.32147 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.38344 * 120.00356 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00055 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47294 * 84.99500 * 7 6 5 9 9 N 1.46902 * 109.47040 * 180.02562 * 8 7 6 10 10 C 1.48538 * 111.00008 * 287.39963 * 9 8 7 11 11 C 1.54933 * 103.22775 * 200.28164 * 10 9 8 12 12 C 1.54601 * 102.92319 * 37.41086 * 11 10 9 13 13 O 1.42898 * 110.39431 * 219.08938 * 12 11 10 14 14 C 1.50697 * 110.30782 * 96.95737 * 12 11 10 15 15 H 1.07991 * 120.00449 * 244.00973 * 14 12 11 16 16 C 1.37885 * 119.99686 * 64.28804 * 14 12 11 17 17 N 1.31514 * 120.00035 * 179.72339 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 359.72191 * 16 14 12 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 C 1.47894 * 110.99735 * 170.00319 * 9 8 7 23 23 N 1.32138 * 119.99965 * 180.25628 * 2 1 3 24 24 H 1.08990 * 109.47092 * 89.99991 * 1 2 3 25 25 H 1.09000 * 109.46652 * 209.99842 * 1 2 3 26 26 H 1.08998 * 109.46695 * 329.99310 * 1 2 3 27 27 H 1.07999 * 119.99657 * 0.02890 * 3 2 1 28 28 H 1.08002 * 119.99838 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46868 * 324.99608 * 7 6 5 30 30 H 1.08996 * 109.46938 * 204.99763 * 7 6 5 31 31 H 1.09007 * 109.46601 * 60.00359 * 8 7 6 32 32 H 1.08996 * 109.47343 * 300.00015 * 8 7 6 33 33 H 1.09004 * 110.66572 * 318.71538 * 10 9 8 34 34 H 1.08999 * 110.66727 * 81.67563 * 10 9 8 35 35 H 1.09002 * 110.72096 * 279.05531 * 11 10 9 36 36 H 1.08995 * 110.72601 * 155.77053 * 11 10 9 37 37 H 0.96707 * 113.99376 * 297.15337 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.92213 * 26.48972 * 22 9 8 40 40 H 1.09006 * 109.91892 * 265.19391 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1983 0.0005 5 6 4.1809 0.0538 0.0005 6 6 3.4892 -1.1443 0.0005 7 6 4.2426 -2.4494 -0.0001 8 6 4.6072 -2.8286 1.4367 9 7 5.3422 -4.1005 1.4360 10 6 4.4358 -5.2389 1.1382 11 6 5.2120 -6.4628 1.6859 12 6 5.8728 -5.9074 2.9686 13 8 7.1959 -6.4275 3.1124 14 6 5.0414 -6.2532 4.1770 15 1 4.5851 -5.4679 4.7612 16 6 4.8681 -7.5721 4.5400 17 7 4.1471 -7.8736 5.5978 18 14 5.6575 -8.9304 3.5294 19 1 7.0127 -9.2205 4.0629 20 1 4.8218 -10.1554 3.6084 21 1 5.7654 -8.4953 2.1137 22 6 5.9172 -4.3810 2.7694 23 7 2.1677 -1.1443 -0.0051 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 1.6590 2.1337 0.0005 28 1 5.2609 0.0537 0.0013 29 1 5.1531 -2.3430 -0.5899 30 1 3.6175 -3.2296 -0.4343 31 1 3.6967 -2.9349 2.0265 32 1 5.2323 -2.0484 1.8709 33 1 3.4859 -5.1210 1.6598 34 1 4.2745 -5.3315 0.0642 35 1 5.9688 -6.7901 0.9729 36 1 4.5285 -7.2773 1.9258 37 1 7.2314 -7.3880 3.2196 38 1 4.0249 -8.8015 5.8529 39 1 5.3247 -3.8885 3.5405 40 1 6.9488 -4.0312 2.8101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593034020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = 13.475315 kcal Electronic energy + Delta-G solvation = -21355.443434 eV Core-core repulsion = 18170.702177 eV Total energy + Delta-G solvation = -3184.741257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30110 -38.76810 -35.87249 -34.66402 -34.05216 -32.40765 -31.22960 -29.05789 -28.14303 -27.57511 -25.08894 -23.75077 -23.19777 -21.82260 -20.43993 -19.62605 -17.85757 -17.15510 -17.02404 -16.05336 -15.75607 -15.25772 -14.95577 -14.46819 -14.19295 -13.80705 -13.48398 -13.24515 -13.19514 -12.75918 -12.73062 -12.51756 -12.48276 -12.05269 -11.79985 -11.67705 -11.53401 -11.37605 -10.95459 -10.75758 -10.65637 -10.42322 -10.10742 -9.80520 -9.22962 -9.20107 -9.16100 -8.79969 -8.49802 -7.91309 -6.28496 -4.33007 0.59811 0.99281 3.09948 3.17353 3.24411 3.47399 3.75595 4.11262 4.18009 4.24618 4.42977 4.66845 4.87831 4.91377 5.09519 5.13358 5.23730 5.26470 5.33115 5.44389 5.49184 5.57499 5.67312 5.74048 5.79739 6.03291 6.06204 6.13221 6.24081 6.26857 6.45267 6.62905 6.73224 6.83586 6.98656 7.14768 7.20093 7.50871 7.62060 7.66206 8.27018 8.73289 8.75012 9.31052 10.84181 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.003751 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.617298 B = 7462.036714 C = 7817.123116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.082 3.918 3 C 0.036 3.964 4 N -0.435 5.435 5 C 0.044 3.956 6 C 0.099 3.901 7 C -0.063 4.063 8 C 0.055 3.945 9 N -0.517 5.517 10 C 0.043 3.957 11 C -0.150 4.150 12 C 0.211 3.789 13 O -0.574 6.574 14 C -0.536 4.536 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.886 5.886 18 Si 0.846 3.154 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.235 1.235 22 C 0.063 3.937 23 N -0.438 5.438 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.349 0.651 38 H 0.267 0.733 39 H 0.052 0.948 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 13.347 -12.750 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.058 4.058 3 C -0.124 4.124 4 N -0.148 5.148 5 C -0.116 4.116 6 C -0.042 4.042 7 C -0.102 4.102 8 C -0.074 4.074 9 N -0.242 5.242 10 C -0.084 4.084 11 C -0.189 4.189 12 C 0.171 3.829 13 O -0.383 6.383 14 C -0.574 4.574 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.523 5.523 18 Si 0.673 3.327 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.159 1.159 22 C -0.064 4.064 23 N -0.154 5.154 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.199 0.801 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.833 13.914 -13.087 19.482 hybrid contribution -0.545 -1.443 0.416 1.598 sum -4.379 12.471 -12.671 18.310 Atomic orbital electron populations 1.20696 0.87783 1.04064 1.03402 1.22369 0.98496 0.89565 0.95417 1.23552 0.90956 0.99110 0.98784 1.68417 1.08810 1.29706 1.07856 1.23620 1.01969 0.88186 0.97827 1.22363 0.90358 0.97236 0.94198 1.20511 0.99258 0.91671 0.98803 1.22132 0.97332 0.93464 0.94501 1.64759 1.29957 1.01080 1.28368 1.23118 0.94978 0.90827 0.99511 1.23617 0.99479 0.97042 0.98747 1.19974 0.80365 0.90037 0.92509 1.86469 1.31320 1.24469 1.96023 1.21507 1.31209 0.93913 1.10743 0.90327 1.25033 0.94245 0.98690 0.94736 1.69890 1.38440 1.19094 1.24874 0.87708 0.79801 0.82177 0.83000 1.19925 1.21323 1.15909 1.22629 0.99594 0.96107 0.88072 1.68207 1.08508 1.29311 1.09381 0.90038 0.89975 0.90236 0.81666 0.81250 0.88822 0.89532 0.94150 0.91046 0.93292 0.91298 0.92361 0.90925 0.80133 0.92267 0.92934 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.19 36.01 0.37 -0.38 16 2 C 0.08 0.89 6.79 -82.41 -0.56 0.33 16 3 C 0.04 0.37 10.88 -17.37 -0.19 0.18 16 4 N -0.43 -5.21 10.50 -13.06 -0.14 -5.35 16 5 C 0.04 0.50 10.90 -17.38 -0.19 0.31 16 6 C 0.10 1.25 6.04 -82.41 -0.50 0.75 16 7 C -0.06 -0.79 5.59 -27.88 -0.16 -0.95 16 8 C 0.06 0.83 4.69 -3.82 -0.02 0.81 16 9 N -0.52 -9.26 5.24 -230.44 -1.21 -10.47 16 10 C 0.04 0.80 5.91 -1.90 -0.01 0.79 16 11 C -0.15 -3.21 4.24 -24.87 -0.11 -3.31 16 12 C 0.21 5.01 0.96 -90.41 -0.09 4.92 16 13 O -0.57 -13.97 12.91 -35.23 -0.45 -14.42 16 14 C -0.54 -14.78 8.82 -34.44 -0.30 -15.08 16 15 H 0.08 2.36 7.59 -52.49 -0.40 1.96 16 16 C 0.08 2.13 5.37 -17.82 -0.10 2.04 16 17 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 18 Si 0.85 19.61 23.20 -169.99 -3.94 15.67 16 19 H -0.27 -6.20 7.03 56.52 0.40 -5.80 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.24 -5.01 4.55 56.52 0.26 -4.76 16 22 C 0.06 1.33 6.13 -2.75 -0.02 1.31 16 23 N -0.44 -5.81 10.35 -5.56 -0.06 -5.86 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.09 1.14 7.37 -51.93 -0.38 0.75 16 31 H 0.04 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.05 0.95 7.81 -51.93 -0.41 0.54 16 34 H 0.07 1.10 7.80 -51.93 -0.40 0.70 16 35 H 0.06 1.19 7.85 -51.93 -0.41 0.79 16 36 H 0.07 1.61 5.31 -51.93 -0.28 1.33 16 37 H 0.35 8.12 4.37 45.56 0.20 8.32 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.05 1.13 7.02 -51.93 -0.36 0.76 16 40 H 0.08 1.55 7.96 -51.93 -0.41 1.13 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -31.77 317.27 -7.61 -39.37 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.50 Total: 10.07 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.86 Total: -8.28 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.63 Total: -47.18 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.45 Total: -14.42 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -3.94 Total: 15.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.77 -7.61 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593034020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.848 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds