Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38389 * 120.00301 * 2 1 4 4 N 1.32127 * 119.99487 * 179.97438 * 3 2 1 5 5 C 1.32147 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.38344 * 120.00356 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00055 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47294 * 84.99500 * 7 6 5 9 9 N 1.46902 * 109.47040 * 180.02562 * 8 7 6 10 10 C 1.48538 * 111.00008 * 287.39963 * 9 8 7 11 11 C 1.54933 * 103.22775 * 200.28164 * 10 9 8 12 12 C 1.54601 * 102.92319 * 37.41086 * 11 10 9 13 13 O 1.42898 * 110.39431 * 219.08938 * 12 11 10 14 14 C 1.50697 * 110.30782 * 96.95737 * 12 11 10 15 15 H 1.07991 * 120.00449 * 244.00973 * 14 12 11 16 16 C 1.37885 * 119.99686 * 64.28804 * 14 12 11 17 17 N 1.31514 * 120.00035 * 179.72339 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 359.72191 * 16 14 12 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 C 1.47894 * 110.99735 * 170.00319 * 9 8 7 23 23 N 1.32138 * 119.99965 * 180.25628 * 2 1 3 24 24 H 1.08990 * 109.47092 * 89.99991 * 1 2 3 25 25 H 1.09000 * 109.46652 * 209.99842 * 1 2 3 26 26 H 1.08998 * 109.46695 * 329.99310 * 1 2 3 27 27 H 1.07999 * 119.99657 * 0.02890 * 3 2 1 28 28 H 1.08002 * 119.99838 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46868 * 324.99608 * 7 6 5 30 30 H 1.08996 * 109.46938 * 204.99763 * 7 6 5 31 31 H 1.09007 * 109.46601 * 60.00359 * 8 7 6 32 32 H 1.08996 * 109.47343 * 300.00015 * 8 7 6 33 33 H 1.09004 * 110.66572 * 318.71538 * 10 9 8 34 34 H 1.08999 * 110.66727 * 81.67563 * 10 9 8 35 35 H 1.09002 * 110.72096 * 279.05531 * 11 10 9 36 36 H 1.08995 * 110.72601 * 155.77053 * 11 10 9 37 37 H 0.96707 * 113.99376 * 297.15337 * 13 12 11 38 38 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.92213 * 26.48972 * 22 9 8 40 40 H 1.09006 * 109.91892 * 265.19391 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1983 0.0005 5 6 4.1809 0.0538 0.0005 6 6 3.4892 -1.1443 0.0005 7 6 4.2426 -2.4494 -0.0001 8 6 4.6072 -2.8286 1.4367 9 7 5.3422 -4.1005 1.4360 10 6 4.4358 -5.2389 1.1382 11 6 5.2120 -6.4628 1.6859 12 6 5.8728 -5.9074 2.9686 13 8 7.1959 -6.4275 3.1124 14 6 5.0414 -6.2532 4.1770 15 1 4.5851 -5.4679 4.7612 16 6 4.8681 -7.5721 4.5400 17 7 4.1471 -7.8736 5.5978 18 14 5.6575 -8.9304 3.5294 19 1 7.0127 -9.2205 4.0629 20 1 4.8218 -10.1554 3.6084 21 1 5.7654 -8.4953 2.1137 22 6 5.9172 -4.3810 2.7694 23 7 2.1677 -1.1443 -0.0051 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 1.6590 2.1337 0.0005 28 1 5.2609 0.0537 0.0013 29 1 5.1531 -2.3430 -0.5899 30 1 3.6175 -3.2296 -0.4343 31 1 3.6967 -2.9349 2.0265 32 1 5.2323 -2.0484 1.8709 33 1 3.4859 -5.1210 1.6598 34 1 4.2745 -5.3315 0.0642 35 1 5.9688 -6.7901 0.9729 36 1 4.5285 -7.2773 1.9258 37 1 7.2314 -7.3880 3.2196 38 1 4.0249 -8.8015 5.8529 39 1 5.3247 -3.8885 3.5405 40 1 6.9488 -4.0312 2.8101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593034020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -12.683293 kcal Electronic energy + Delta-G solvation = -21356.577757 eV Core-core repulsion = 18170.702177 eV Total energy + Delta-G solvation = -3185.875579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14378 -40.41752 -37.44199 -35.57936 -35.11342 -34.52664 -32.53485 -30.32360 -29.75475 -28.59778 -26.73132 -25.03187 -24.19872 -22.99002 -21.82149 -21.42392 -19.20045 -18.72345 -17.81930 -17.79609 -17.34154 -16.26371 -16.15944 -15.81393 -15.61108 -15.33853 -14.96788 -14.61727 -14.33873 -14.11148 -13.86602 -13.72578 -13.63030 -13.34541 -13.15485 -12.99045 -12.76326 -12.56075 -12.48200 -12.38621 -12.07761 -11.92343 -11.76711 -11.54929 -11.12416 -10.81648 -10.45119 -10.04255 -10.00031 -9.44779 -8.43616 -6.55385 -0.22401 0.13227 1.25829 1.31052 1.39577 2.20478 2.59772 2.81145 2.88489 3.18266 3.35857 3.50107 3.60118 3.81273 3.89450 3.93128 4.05550 4.22821 4.24776 4.33827 4.41759 4.47554 4.57585 4.61481 4.73983 4.78453 4.82194 4.92211 4.98422 5.03541 5.09112 5.13947 5.17363 5.21642 5.38011 5.47979 5.82053 6.03572 6.15803 6.32883 6.50712 6.82584 6.86895 7.13675 8.72566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.003751 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.617298 B = 7462.036714 C = 7817.123116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.072 3.928 3 C 0.040 3.960 4 N -0.454 5.454 5 C 0.039 3.961 6 C 0.083 3.917 7 C -0.050 4.050 8 C 0.059 3.941 9 N -0.505 5.505 10 C 0.048 3.952 11 C -0.149 4.149 12 C 0.203 3.797 13 O -0.578 6.578 14 C -0.548 4.548 15 H 0.031 0.969 16 C 0.019 3.981 17 N -0.936 5.936 18 Si 0.910 3.090 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.201 1.201 22 C 0.066 3.934 23 N -0.469 5.469 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.200 0.800 28 H 0.190 0.810 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.354 0.646 38 H 0.270 0.730 39 H 0.033 0.967 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 13.979 -15.464 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.069 4.069 3 C -0.120 4.120 4 N -0.168 5.168 5 C -0.119 4.119 6 C -0.057 4.057 7 C -0.089 4.089 8 C -0.070 4.070 9 N -0.229 5.229 10 C -0.080 4.080 11 C -0.188 4.188 12 C 0.163 3.837 13 O -0.388 6.388 14 C -0.586 4.586 15 H 0.049 0.951 16 C -0.180 4.180 17 N -0.575 5.575 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.123 1.123 22 C -0.062 4.062 23 N -0.186 5.186 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.217 0.783 28 H 0.207 0.793 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.204 0.796 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.271 14.566 -15.815 21.748 hybrid contribution -0.817 -1.499 1.358 2.182 sum -4.088 13.067 -14.458 19.912 Atomic orbital electron populations 1.20801 0.85545 1.04764 1.04530 1.22932 1.00042 0.89196 0.94729 1.24127 0.90595 1.00297 0.96999 1.68478 1.09796 1.29891 1.08614 1.23903 1.02950 0.87768 0.97318 1.22341 0.90427 0.97440 0.95507 1.20363 1.00059 0.91705 0.96740 1.22160 0.96137 0.92324 0.96411 1.64818 1.30200 1.02027 1.25835 1.23129 0.93768 0.89833 1.01254 1.23531 0.99754 0.97855 0.97625 1.20031 0.79664 0.91937 0.92027 1.86454 1.31228 1.25007 1.96075 1.21721 1.31727 0.93135 1.12018 0.95067 1.25979 0.94613 1.01533 0.95864 1.70052 1.40452 1.19886 1.27133 0.86658 0.78943 0.78037 0.83052 1.18637 1.21425 1.12348 1.22509 0.99951 0.94299 0.89399 1.68182 1.09152 1.30933 1.10322 0.88563 0.91223 0.87559 0.78289 0.79313 0.86760 0.90152 0.96481 0.89974 0.95068 0.87773 0.90398 0.91906 0.79626 0.92098 0.94835 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.19 71.24 0.73 -0.53 16 2 C 0.07 1.44 6.79 42.55 0.29 1.73 16 3 C 0.04 0.72 10.88 84.68 0.92 1.65 16 4 N -0.45 -10.08 10.50 -195.23 -2.05 -12.13 16 5 C 0.04 0.84 10.90 84.67 0.92 1.77 16 6 C 0.08 1.99 6.04 42.54 0.26 2.25 16 7 C -0.05 -1.16 5.59 29.85 0.17 -1.00 16 8 C 0.06 1.72 4.69 86.30 0.40 2.13 16 9 N -0.50 -17.36 5.24 -882.99 -4.63 -21.99 16 10 C 0.05 1.69 5.91 86.65 0.51 2.20 16 11 C -0.15 -6.05 4.24 31.80 0.13 -5.92 16 12 C 0.20 9.57 0.96 -10.66 -0.01 9.55 16 13 O -0.58 -27.21 12.91 -148.98 -1.92 -29.14 16 14 C -0.55 -31.29 8.82 25.60 0.23 -31.06 16 15 H 0.03 2.01 7.59 -2.92 -0.02 1.98 16 16 C 0.02 1.10 5.37 84.66 0.45 1.55 16 17 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 18 Si 0.91 40.08 23.20 68.60 1.59 41.67 16 19 H -0.26 -10.95 7.03 99.48 0.70 -10.25 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.20 -7.74 4.55 99.48 0.45 -7.28 16 22 C 0.07 2.78 6.13 86.45 0.53 3.31 16 23 N -0.47 -12.09 10.35 -171.50 -1.77 -13.86 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.11 0.76 8.09 -2.39 -0.02 0.74 16 27 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.11 2.18 8.12 -2.39 -0.02 2.16 16 30 H 0.08 1.98 7.37 -2.39 -0.02 1.96 16 31 H 0.02 0.58 7.83 -2.38 -0.02 0.56 16 32 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 33 H 0.03 1.21 7.81 -2.38 -0.02 1.19 16 34 H 0.10 2.99 7.80 -2.39 -0.02 2.97 16 35 H 0.08 2.88 7.85 -2.39 -0.02 2.86 16 36 H 0.06 2.66 5.31 -2.39 -0.01 2.65 16 37 H 0.35 15.60 4.37 -74.05 -0.32 15.27 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.03 1.50 7.02 -2.39 -0.02 1.49 16 40 H 0.08 3.30 7.96 -2.38 -0.02 3.28 16 Total: -1.00 -71.12 317.27 -2.49 -73.61 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.46 Total: 31.48 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.54 Total: -12.37 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -8.16 Total: -105.25 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.92 Total: -29.14 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.59 Total: 41.67 kcal Total: -71.12 -2.49 -73.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593034020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.931 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds