Wall clock time and date at job start Mon Mar 30 2020 02:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38390 * 119.99854 * 2 1 4 4 N 1.32127 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.32145 * 120.00235 * 0.02562 * 4 3 2 6 6 C 1.38343 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.50710 * 119.99891 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47025 * 85.00142 * 7 6 5 9 9 N 1.46900 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.48720 * 111.01831 * 74.48907 * 9 8 7 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 8 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 O 1.42897 * 110.32932 * 118.94591 * 12 11 10 14 14 C 1.50712 * 110.32186 * 241.05248 * 12 11 10 15 15 H 1.07993 * 120.00045 * 118.54517 * 14 12 11 16 16 C 1.37880 * 119.99643 * 298.54459 * 14 12 11 17 17 N 1.31518 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99631 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47010 * 90.00160 * 18 16 14 20 20 H 1.48505 * 109.46836 * 210.00036 * 18 16 14 21 21 H 1.48498 * 109.47192 * 329.99829 * 18 16 14 22 22 C 1.48567 * 110.99718 * 189.99889 * 9 8 7 23 23 N 1.32121 * 120.00262 * 180.25342 * 2 1 3 24 24 H 1.08997 * 109.47136 * 90.00152 * 1 2 3 25 25 H 1.09005 * 109.46950 * 209.99989 * 1 2 3 26 26 H 1.09004 * 109.47134 * 330.00031 * 1 2 3 27 27 H 1.08001 * 120.00409 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00565 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46820 * 324.99546 * 7 6 5 30 30 H 1.08997 * 109.46909 * 204.99978 * 7 6 5 31 31 H 1.08997 * 109.47422 * 59.99733 * 8 7 6 32 32 H 1.08999 * 109.46632 * 299.99738 * 8 7 6 33 33 H 1.09004 * 110.38960 * 40.24251 * 10 9 8 34 34 H 1.08996 * 110.50963 * 277.74694 * 10 9 8 35 35 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 36 36 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 37 37 H 0.96700 * 113.99805 * 61.44815 * 13 12 11 38 38 H 0.97001 * 119.99874 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.41133 * 82.17552 * 22 9 8 40 40 H 1.09001 * 110.41003 * 319.73948 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0541 0.0005 6 6 3.4892 -1.1440 0.0005 7 6 4.2428 -2.4492 -0.0001 8 6 4.6072 -2.8283 1.4367 9 7 5.3422 -4.1002 1.4360 10 6 6.7348 -3.9112 0.9493 11 6 7.5059 -5.1301 1.4998 12 6 6.6970 -5.5982 2.7270 13 8 6.2327 -6.9359 2.5349 14 6 7.5398 -5.5115 3.9735 15 1 7.2395 -4.8649 4.7846 16 6 8.6944 -6.2580 4.0781 17 7 9.0604 -7.0451 3.0901 18 14 9.7387 -6.1511 5.6233 19 1 9.2845 -7.1740 6.5993 20 1 11.1619 -6.3952 5.2766 21 1 9.5998 -4.7994 6.2221 22 6 5.5044 -4.6221 2.8175 23 7 2.1677 -1.1442 -0.0051 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6590 2.1338 -0.0004 28 1 5.2609 0.0539 0.0005 29 1 5.1532 -2.3428 -0.5899 30 1 3.6177 -3.2294 -0.4343 31 1 3.6968 -2.9347 2.0265 32 1 5.2323 -2.0481 1.8709 33 1 7.1533 -2.9860 1.3455 34 1 6.7610 -3.9053 -0.1404 35 1 8.5125 -4.8378 1.7988 36 1 7.5488 -5.9208 0.7507 37 1 6.9403 -7.5861 2.4273 38 1 9.8725 -7.5704 3.1639 39 1 4.6042 -5.1499 3.1326 40 1 5.7301 -3.8087 3.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593034021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:26 Heat of formation + Delta-G solvation = -6.114394 kcal Electronic energy + Delta-G solvation = -21178.990160 eV Core-core repulsion = 17993.399430 eV Total energy + Delta-G solvation = -3185.590731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29739 -38.41059 -35.50780 -34.64035 -33.84835 -32.10773 -31.01880 -28.80360 -27.98148 -27.47386 -24.92979 -23.79787 -23.08612 -21.64276 -20.12479 -19.36100 -17.85840 -17.02640 -16.97936 -15.78793 -15.30460 -15.09340 -14.87088 -14.33570 -13.93012 -13.88528 -13.52748 -13.20075 -13.00295 -12.79019 -12.56728 -12.26803 -12.12164 -11.87967 -11.66087 -11.29455 -11.27811 -11.05796 -10.87380 -10.70850 -10.51479 -10.45741 -10.32003 -9.82371 -9.22493 -9.19159 -9.06339 -8.57909 -8.10735 -7.82192 -6.20302 -4.29118 0.60053 0.99544 3.22233 3.29434 3.32195 3.48106 3.76375 4.11400 4.25583 4.30432 4.49341 4.72489 4.89031 5.06674 5.12428 5.19707 5.23517 5.26994 5.32068 5.47041 5.68314 5.73717 5.74830 5.91310 5.98462 6.12383 6.17545 6.20537 6.30527 6.45338 6.63528 6.95059 7.05016 7.15649 7.36447 7.49959 7.56770 7.66160 7.67004 7.81299 8.21606 8.73887 9.39803 9.58376 10.86251 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.003343 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.348934 B = 8373.113715 C = 8547.605810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.081 3.919 3 C 0.035 3.965 4 N -0.434 5.434 5 C 0.043 3.957 6 C 0.101 3.899 7 C -0.063 4.063 8 C 0.054 3.946 9 N -0.509 5.509 10 C 0.030 3.970 11 C -0.120 4.120 12 C 0.253 3.747 13 O -0.585 6.585 14 C -0.538 4.538 15 H 0.059 0.941 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.052 3.948 23 N -0.437 5.437 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.379 0.621 38 H 0.267 0.733 39 H 0.072 0.928 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 13.291 -7.055 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.060 4.060 3 C -0.125 4.125 4 N -0.148 5.148 5 C -0.117 4.117 6 C -0.040 4.040 7 C -0.102 4.102 8 C -0.076 4.076 9 N -0.233 5.233 10 C -0.098 4.098 11 C -0.159 4.159 12 C 0.213 3.787 13 O -0.394 6.394 14 C -0.577 4.577 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.075 4.075 23 N -0.153 5.153 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.183 0.817 28 H 0.186 0.814 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.228 0.772 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.732 13.118 -7.403 19.093 hybrid contribution 1.712 0.473 1.284 2.192 sum -10.019 13.592 -6.119 17.960 Atomic orbital electron populations 1.20691 0.87793 1.03970 1.03417 1.22368 0.98482 0.89595 0.95508 1.23551 0.90952 0.99113 0.98877 1.68414 1.08816 1.29711 1.07823 1.23615 1.01939 0.88258 0.97877 1.22399 0.90371 0.97246 0.94008 1.20505 0.99220 0.91679 0.98794 1.22117 0.98913 0.91871 0.94663 1.65374 1.14031 1.22719 1.21196 1.23232 0.88652 0.98766 0.99122 1.22848 0.99428 0.95144 0.98479 1.19206 0.87613 0.80313 0.91575 1.86137 1.38747 1.18968 1.95537 1.21725 1.07206 1.26222 1.02505 0.92270 1.24999 0.97097 0.94658 0.96487 1.69711 1.25098 1.27266 1.31244 0.86497 0.79256 0.78566 0.83101 1.20447 1.21088 1.19893 1.23059 1.00072 0.97040 0.87370 1.68209 1.08467 1.29220 1.09401 0.90034 0.90017 0.90283 0.81690 0.81411 0.89657 0.88711 0.91110 0.94891 0.94793 0.91701 0.91078 0.92647 0.77155 0.92330 0.90922 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.19 36.01 0.37 -0.33 16 2 C 0.08 0.86 6.79 -82.41 -0.56 0.31 16 3 C 0.04 0.36 10.88 -17.37 -0.19 0.17 16 4 N -0.43 -5.33 10.50 -13.06 -0.14 -5.46 16 5 C 0.04 0.52 10.90 -17.38 -0.19 0.33 16 6 C 0.10 1.30 6.04 -82.41 -0.50 0.80 16 7 C -0.06 -0.83 5.62 -27.88 -0.16 -0.99 16 8 C 0.05 0.84 4.81 -3.82 -0.02 0.82 16 9 N -0.51 -9.73 5.34 -229.83 -1.23 -10.96 16 10 C 0.03 0.57 5.93 -2.09 -0.01 0.55 16 11 C -0.12 -2.77 5.54 -25.35 -0.14 -2.91 16 12 C 0.25 6.32 1.05 -90.39 -0.10 6.23 16 13 O -0.59 -15.59 12.94 -35.23 -0.46 -16.04 16 14 C -0.54 -14.41 8.08 -34.43 -0.28 -14.69 16 15 H 0.06 1.58 7.58 -52.49 -0.40 1.18 16 16 C 0.07 1.84 5.02 -17.82 -0.09 1.75 16 17 N -0.89 -23.80 10.81 55.43 0.60 -23.20 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.05 1.14 5.73 -2.18 -0.01 1.12 16 23 N -0.44 -5.76 10.35 -5.56 -0.06 -5.82 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16 33 H 0.03 0.61 7.75 -51.93 -0.40 0.21 16 34 H 0.06 1.09 7.86 -51.93 -0.41 0.68 16 35 H 0.07 1.75 7.24 -51.93 -0.38 1.37 16 36 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 37 H 0.38 10.14 7.32 45.56 0.33 10.48 16 38 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.07 1.62 8.08 -51.93 -0.42 1.20 16 40 H 0.04 0.95 7.56 -51.93 -0.39 0.56 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -29.62 328.99 -8.57 -38.19 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.36 Total: 9.61 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.87 Total: -6.84 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.82 Total: -45.44 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.46 Total: -16.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.62 -8.57 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593034021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.075 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds