Wall clock time and date at job start Mon Mar 30 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38390 * 119.99854 * 2 1 4 4 N 1.32127 * 119.99638 * 179.97438 * 3 2 1 5 5 C 1.32145 * 120.00235 * 0.02562 * 4 3 2 6 6 C 1.38343 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.50710 * 119.99891 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47025 * 85.00142 * 7 6 5 9 9 N 1.46900 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.48720 * 111.01831 * 74.48907 * 9 8 7 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 8 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 O 1.42897 * 110.32932 * 118.94591 * 12 11 10 14 14 C 1.50712 * 110.32186 * 241.05248 * 12 11 10 15 15 H 1.07993 * 120.00045 * 118.54517 * 14 12 11 16 16 C 1.37880 * 119.99643 * 298.54459 * 14 12 11 17 17 N 1.31518 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99631 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47010 * 90.00160 * 18 16 14 20 20 H 1.48505 * 109.46836 * 210.00036 * 18 16 14 21 21 H 1.48498 * 109.47192 * 329.99829 * 18 16 14 22 22 C 1.48567 * 110.99718 * 189.99889 * 9 8 7 23 23 N 1.32121 * 120.00262 * 180.25342 * 2 1 3 24 24 H 1.08997 * 109.47136 * 90.00152 * 1 2 3 25 25 H 1.09005 * 109.46950 * 209.99989 * 1 2 3 26 26 H 1.09004 * 109.47134 * 330.00031 * 1 2 3 27 27 H 1.08001 * 120.00409 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00565 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46820 * 324.99546 * 7 6 5 30 30 H 1.08997 * 109.46909 * 204.99978 * 7 6 5 31 31 H 1.08997 * 109.47422 * 59.99733 * 8 7 6 32 32 H 1.08999 * 109.46632 * 299.99738 * 8 7 6 33 33 H 1.09004 * 110.38960 * 40.24251 * 10 9 8 34 34 H 1.08996 * 110.50963 * 277.74694 * 10 9 8 35 35 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 36 36 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 37 37 H 0.96700 * 113.99805 * 61.44815 * 13 12 11 38 38 H 0.97001 * 119.99874 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.41133 * 82.17552 * 22 9 8 40 40 H 1.09001 * 110.41003 * 319.73948 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0541 0.0005 6 6 3.4892 -1.1440 0.0005 7 6 4.2428 -2.4492 -0.0001 8 6 4.6072 -2.8283 1.4367 9 7 5.3422 -4.1002 1.4360 10 6 6.7348 -3.9112 0.9493 11 6 7.5059 -5.1301 1.4998 12 6 6.6970 -5.5982 2.7270 13 8 6.2327 -6.9359 2.5349 14 6 7.5398 -5.5115 3.9735 15 1 7.2395 -4.8649 4.7846 16 6 8.6944 -6.2580 4.0781 17 7 9.0604 -7.0451 3.0901 18 14 9.7387 -6.1511 5.6233 19 1 9.2845 -7.1740 6.5993 20 1 11.1619 -6.3952 5.2766 21 1 9.5998 -4.7994 6.2221 22 6 5.5044 -4.6221 2.8175 23 7 2.1677 -1.1442 -0.0051 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6590 2.1338 -0.0004 28 1 5.2609 0.0539 0.0005 29 1 5.1532 -2.3428 -0.5899 30 1 3.6177 -3.2294 -0.4343 31 1 3.6968 -2.9347 2.0265 32 1 5.2323 -2.0481 1.8709 33 1 7.1533 -2.9860 1.3455 34 1 6.7610 -3.9053 -0.1404 35 1 8.5125 -4.8378 1.7988 36 1 7.5488 -5.9208 0.7507 37 1 6.9403 -7.5861 2.4273 38 1 9.8725 -7.5704 3.1639 39 1 4.6042 -5.1499 3.1326 40 1 5.7301 -3.8087 3.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593034021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:25 Heat of formation + Delta-G solvation = -28.470469 kcal Electronic energy + Delta-G solvation = -21179.959593 eV Core-core repulsion = 17993.399430 eV Total energy + Delta-G solvation = -3186.560163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14722 -40.08650 -37.09119 -35.55189 -35.00697 -34.16678 -32.31661 -30.10107 -29.62449 -28.52767 -26.58297 -25.04098 -24.08114 -22.79784 -21.61576 -21.22330 -18.98762 -18.73160 -17.81496 -17.26108 -16.95244 -16.38130 -16.12852 -15.67687 -15.49259 -15.26087 -14.79973 -14.41026 -14.14866 -13.88742 -13.73015 -13.46880 -13.33057 -13.21702 -13.11566 -12.86636 -12.64237 -12.55990 -12.48693 -12.30935 -12.13965 -11.96769 -11.85753 -11.60091 -11.04891 -10.60012 -10.10350 -10.04103 -9.99552 -9.36885 -8.21262 -6.37754 -0.22866 0.13004 1.39937 1.42238 1.51112 2.37758 2.61819 2.88523 3.03698 3.24785 3.34745 3.49670 3.82158 3.91354 3.99666 4.04974 4.15669 4.31231 4.33732 4.39432 4.47736 4.52440 4.57453 4.73785 4.76746 4.82155 4.89466 4.96267 5.10629 5.13090 5.18151 5.25472 5.46698 5.49101 5.60529 5.73138 5.84876 6.15828 6.27828 6.32467 6.68947 6.82357 7.34056 7.49297 8.83897 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034165 B = 0.003343 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.348934 B = 8373.113715 C = 8547.605810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.074 3.926 3 C 0.040 3.960 4 N -0.454 5.454 5 C 0.036 3.964 6 C 0.086 3.914 7 C -0.050 4.050 8 C 0.059 3.941 9 N -0.515 5.515 10 C 0.040 3.960 11 C -0.113 4.113 12 C 0.235 3.765 13 O -0.597 6.597 14 C -0.563 4.563 15 H 0.052 0.948 16 C 0.030 3.970 17 N -0.909 5.909 18 Si 0.959 3.041 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.271 1.271 22 C 0.059 3.941 23 N -0.465 5.465 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.202 0.798 28 H 0.184 0.816 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.373 0.627 38 H 0.269 0.731 39 H 0.062 0.938 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 15.292 -7.359 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.067 4.067 3 C -0.120 4.120 4 N -0.168 5.168 5 C -0.123 4.123 6 C -0.055 4.055 7 C -0.089 4.089 8 C -0.070 4.070 9 N -0.239 5.239 10 C -0.088 4.088 11 C -0.152 4.152 12 C 0.195 3.805 13 O -0.405 6.405 14 C -0.602 4.602 15 H 0.070 0.930 16 C -0.171 4.171 17 N -0.549 5.549 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.069 4.069 23 N -0.182 5.182 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.218 0.782 28 H 0.201 0.799 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.222 0.778 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.347 15.123 -7.717 20.992 hybrid contribution 1.814 -0.115 1.367 2.274 sum -10.533 15.007 -6.350 19.403 Atomic orbital electron populations 1.20812 0.85284 1.04931 1.04547 1.22972 1.00139 0.89085 0.94475 1.24161 0.90482 1.00433 0.96955 1.68469 1.09947 1.29780 1.08596 1.23818 1.02738 0.87966 0.97742 1.22272 0.90554 0.97122 0.95503 1.20325 0.99770 0.91813 0.97009 1.22110 0.98109 0.90275 0.96489 1.65340 1.14335 1.25021 1.19157 1.23175 0.87854 0.97163 1.00563 1.22641 0.98648 0.96483 0.97440 1.19509 0.89096 0.79994 0.91919 1.86129 1.38851 1.19868 1.95633 1.21972 1.08163 1.26808 1.03219 0.92959 1.25680 0.98003 0.94270 0.99140 1.69793 1.25320 1.27326 1.32444 0.85556 0.77846 0.78475 0.79713 1.20378 1.20415 1.19559 1.22875 0.98345 0.96452 0.89223 1.68188 1.08867 1.30873 1.10266 0.88665 0.90901 0.87463 0.78178 0.79944 0.88185 0.89866 0.91845 0.94059 0.93480 0.89026 0.93210 0.94077 0.77800 0.92135 0.91921 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.19 71.24 0.73 -0.38 16 2 C 0.07 1.43 6.79 42.55 0.29 1.72 16 3 C 0.04 0.71 10.88 84.68 0.92 1.63 16 4 N -0.45 -10.22 10.50 -195.23 -2.05 -12.27 16 5 C 0.04 0.80 10.90 84.67 0.92 1.73 16 6 C 0.09 2.10 6.04 42.54 0.26 2.35 16 7 C -0.05 -1.26 5.62 29.85 0.17 -1.10 16 8 C 0.06 1.78 4.81 86.30 0.42 2.19 16 9 N -0.51 -19.27 5.34 -881.04 -4.70 -23.97 16 10 C 0.04 1.46 5.93 86.42 0.51 1.97 16 11 C -0.11 -5.26 5.54 31.49 0.17 -5.08 16 12 C 0.23 11.90 1.05 -10.64 -0.01 11.89 16 13 O -0.60 -32.56 12.94 -148.98 -1.93 -34.48 16 14 C -0.56 -30.57 8.08 25.60 0.21 -30.37 16 15 H 0.05 2.83 7.58 -2.91 -0.02 2.81 16 16 C 0.03 1.58 5.02 84.65 0.43 2.00 16 17 N -0.91 -48.93 10.81 21.45 0.23 -48.70 16 18 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.06 2.60 5.73 86.45 0.50 3.09 16 23 N -0.47 -11.75 10.35 -171.50 -1.77 -13.53 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.11 0.60 8.09 -2.39 -0.02 0.58 16 27 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.10 2.18 7.45 -2.39 -0.02 2.16 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.04 1.19 7.77 -2.39 -0.02 1.17 16 33 H 0.05 1.60 7.75 -2.38 -0.02 1.58 16 34 H 0.09 2.88 7.86 -2.39 -0.02 2.86 16 35 H 0.05 2.48 7.24 -2.39 -0.02 2.46 16 36 H 0.04 1.97 7.98 -2.39 -0.02 1.95 16 37 H 0.37 20.63 7.32 -74.06 -0.54 20.08 16 38 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.06 2.84 8.08 -2.39 -0.02 2.82 16 40 H 0.05 1.97 7.56 -2.39 -0.02 1.95 16 Total: -1.00 -63.90 328.99 -2.20 -66.10 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.49 Total: 30.94 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.50 Total: -8.34 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -8.29 Total: -98.47 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.93 Total: -34.48 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -63.90 -2.20 -66.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593034021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds