Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38772 * 119.99652 * 2 1 4 4 C 1.38617 * 118.02996 * 180.02562 * 3 2 1 5 5 C 1.39393 * 117.90971 * 0.02562 * 4 3 2 6 6 N 1.39449 * 120.14924 * 180.02562 * 5 4 3 7 7 C 1.46493 * 120.00423 * 265.03848 * 6 5 4 8 8 C 1.34783 * 119.99356 * 85.03274 * 6 5 4 9 9 O 1.21268 * 120.00243 * 5.07927 * 8 6 5 10 10 C 1.50695 * 119.99498 * 185.07651 * 8 6 5 11 11 C 1.52998 * 109.47135 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47681 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47332 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47174 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99605 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00375 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99895 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46819 * 89.99974 * 18 16 14 20 20 H 1.48505 * 109.47130 * 209.99847 * 18 16 14 21 21 H 1.48500 * 109.47269 * 330.00173 * 18 16 14 22 22 N 1.32433 * 119.70098 * 359.97438 * 5 4 3 23 23 N 1.28340 * 122.08356 * 359.97438 * 22 5 4 24 24 H 1.09006 * 109.47201 * 269.97741 * 1 2 3 25 25 H 1.09003 * 109.47432 * 29.97434 * 1 2 3 26 26 H 1.09006 * 109.47199 * 149.97678 * 1 2 3 27 27 H 1.08004 * 120.98805 * 0.04533 * 3 2 1 28 28 H 1.07999 * 121.04641 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47555 * 89.99639 * 7 6 5 30 30 H 1.09000 * 109.47317 * 210.00355 * 7 6 5 31 31 H 1.09005 * 109.46682 * 329.99623 * 7 6 5 32 32 H 1.08997 * 109.47743 * 300.00612 * 10 8 6 33 33 H 1.09008 * 109.47244 * 60.00669 * 10 8 6 34 34 H 1.08993 * 109.47633 * 300.00489 * 11 10 8 35 35 H 1.09010 * 109.47131 * 60.00548 * 11 10 8 36 36 H 1.08993 * 109.47142 * 300.00980 * 12 11 10 37 37 H 1.09006 * 109.46308 * 60.00681 * 12 11 10 38 38 H 1.08993 * 109.47833 * 300.00588 * 13 12 11 39 39 H 1.09006 * 109.46842 * 60.01040 * 13 12 11 40 40 H 0.96996 * 119.99972 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2018 0.0000 4 6 3.5861 1.1543 -0.0005 5 6 4.1960 -0.0992 -0.0016 6 7 5.5867 -0.2015 -0.0017 7 6 6.3093 -0.3635 -1.2656 8 6 6.2660 -0.1511 1.1613 9 8 5.6647 -0.1097 2.2136 10 6 7.7730 -0.1463 1.1540 11 6 8.2898 -0.0844 2.5927 12 6 9.8198 -0.0802 2.5854 13 6 10.3365 -0.0177 4.0241 14 6 11.8436 -0.0129 4.0168 15 1 12.3791 -0.0503 3.0796 16 6 12.5386 0.0391 5.2064 17 7 11.8864 0.0841 6.3476 18 14 14.4065 0.0458 5.1973 19 1 14.8962 1.4464 5.1367 20 1 14.9099 -0.6015 6.4355 21 1 14.8985 -0.7022 4.0125 22 7 3.4486 -1.1925 -0.0016 23 7 2.1662 -1.1416 -0.0001 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6769 2.1463 0.0007 28 1 4.1746 2.0599 -0.0002 29 1 6.5636 0.6173 -1.6672 30 1 7.2224 -0.9329 -1.0918 31 1 5.6794 -0.8958 -1.9785 32 1 8.1369 -1.0555 0.6755 33 1 8.1309 0.7229 0.6021 34 1 7.9259 0.8249 3.0708 35 1 7.9320 -0.9535 3.1450 36 1 10.1833 -0.9898 2.1075 37 1 10.1780 0.7886 2.0330 38 1 9.9730 0.8921 4.5016 39 1 9.9784 -0.8863 4.5768 40 1 12.3753 0.1204 7.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593985780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -15.870630 kcal Electronic energy + Delta-G solvation = -20375.747911 eV Core-core repulsion = 17189.734118 eV Total energy + Delta-G solvation = -3186.013793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43859 -40.90046 -37.28575 -36.61772 -34.83831 -34.64772 -33.58152 -31.49037 -29.24702 -27.91973 -27.45196 -25.66103 -24.57228 -23.60313 -21.82951 -20.85438 -18.90502 -18.60310 -18.35197 -17.87749 -17.03086 -16.69695 -16.50235 -16.08697 -15.71622 -15.43473 -14.72832 -14.53582 -14.24516 -14.20615 -13.78144 -13.74249 -13.61721 -13.51984 -13.21784 -13.16652 -12.81836 -12.41217 -12.33598 -12.16769 -12.14893 -11.37992 -11.36848 -11.34276 -11.22196 -11.14789 -10.98706 -10.64373 -10.54417 -9.96264 -8.18119 -6.30223 -0.30135 -0.27774 1.34057 1.40959 1.43341 1.53545 1.54621 2.34112 2.42477 3.12028 3.14742 3.33735 3.52238 3.63659 3.78928 3.96730 3.99106 4.09141 4.20048 4.51229 4.53686 4.59779 4.61348 4.69324 4.74159 4.76447 4.85589 4.88353 4.89363 5.08349 5.17103 5.23373 5.33114 5.36393 5.49126 5.57382 5.78786 5.88923 6.01636 6.25754 6.88548 6.92337 7.39476 7.58032 8.94234 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045615 B = 0.002561 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.680685 B =10931.534458 C =11235.321264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.061 3.939 3 C -0.096 4.096 4 C -0.110 4.110 5 C 0.270 3.730 6 N -0.569 5.569 7 C 0.074 3.926 8 C 0.521 3.479 9 O -0.578 6.578 10 C -0.118 4.118 11 C -0.098 4.098 12 C -0.094 4.094 13 C 0.017 3.983 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.258 1.258 22 N -0.281 5.281 23 N -0.271 5.271 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.201 0.799 28 H 0.174 0.826 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.067 0.933 38 H -0.015 1.015 39 H -0.018 1.018 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.052 5.128 -21.855 30.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.141 4.141 5 C 0.036 3.964 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.312 3.688 9 O -0.455 6.455 10 C -0.158 4.158 11 C -0.136 4.136 12 C -0.131 4.131 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.182 1.182 22 N -0.123 5.123 23 N -0.114 5.114 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.099 0.901 27 H 0.218 0.782 28 H 0.192 0.808 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.003 0.997 39 H 0.000 1.000 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.374 3.458 -21.145 29.566 hybrid contribution 0.910 1.166 0.858 1.710 sum -19.464 4.624 -20.287 28.492 Atomic orbital electron populations 1.20855 0.84254 1.05708 1.04767 1.23708 1.01219 0.90212 0.93319 1.22816 0.93222 1.01376 0.95044 1.22855 0.96747 0.98599 0.95850 1.20121 0.86944 0.91450 0.97895 1.45398 1.01769 1.73667 1.09450 1.22285 0.97730 1.04455 0.82160 1.21650 0.91759 0.73614 0.81802 1.90715 1.71803 1.50334 1.32662 1.21743 0.87369 1.07417 0.99234 1.21285 0.95814 1.01017 0.95470 1.21431 0.92935 1.01654 0.97101 1.19070 0.95114 0.94251 0.93564 1.21761 0.93042 1.49928 0.92987 0.91356 1.26117 1.04372 0.94872 0.95235 1.70139 1.37761 1.51918 0.98172 0.85371 0.78737 0.78614 0.77855 1.19621 1.21134 1.18237 1.72860 1.00640 1.28778 1.10009 1.72870 1.00065 1.26987 1.11479 0.88859 0.86688 0.90087 0.78184 0.80815 0.88648 0.87929 0.90671 0.85795 0.84867 0.93569 0.94356 0.91935 0.91451 0.99655 0.99989 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.19 71.24 0.73 -0.12 16 2 C 0.06 1.08 6.87 42.69 0.29 1.37 16 3 C -0.10 -1.28 9.86 22.49 0.22 -1.06 16 4 C -0.11 -2.01 10.14 22.64 0.23 -1.78 16 5 C 0.27 6.91 5.56 132.96 0.74 7.65 16 6 N -0.57 -13.15 2.99 -660.28 -1.97 -15.12 16 7 C 0.07 0.93 10.19 127.77 1.30 2.24 16 8 C 0.52 15.28 7.63 87.65 0.67 15.95 16 9 O -0.58 -23.28 15.96 -2.99 -0.05 -23.32 16 10 C -0.12 -2.87 4.37 29.85 0.13 -2.74 16 11 C -0.10 -3.51 4.50 30.59 0.14 -3.37 16 12 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16 13 C 0.02 0.94 4.97 29.85 0.15 1.09 16 14 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 15 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 16 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 17 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 N -0.28 -8.57 11.53 -54.93 -0.63 -9.20 16 23 N -0.27 -7.36 11.42 -47.58 -0.54 -7.91 16 24 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.11 0.21 8.09 -2.39 -0.02 0.19 16 26 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 28 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.98 6.48 -2.39 -0.02 0.97 16 31 H 0.07 0.94 8.05 -2.38 -0.02 0.92 16 32 H 0.12 2.37 7.25 -2.39 -0.02 2.36 16 33 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.04 1.55 8.10 -2.38 -0.02 1.53 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 38 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.80 343.41 5.58 -81.22 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.02 Total: 2.03 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.45 Total: -15.35 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -2.87 Total: -91.39 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -86.80 5.58 -81.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593985780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.347 kcal (2) G-P(sol) polarization free energy of solvation -86.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds