Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38587 * 120.73723 * 2 1 4 4 N 1.32295 * 119.17602 * 179.97438 * 3 2 1 5 5 C 1.32327 * 120.76094 * 0.02562 * 4 3 2 6 6 O 1.35455 * 119.19580 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99728 * 180.02562 * 6 5 4 8 8 C 1.53120 * 109.52570 * 149.99420 * 7 6 5 9 9 C 1.53041 * 109.28182 * 177.61748 * 8 7 6 10 10 N 1.46849 * 109.52442 * 300.82868 * 9 8 7 11 11 C 1.46901 * 110.99649 * 185.83742 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99608 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46839 * 111.20047 * 61.73811 * 10 9 8 21 21 C 1.53034 * 109.52552 * 298.25821 * 20 10 9 22 22 N 1.32320 * 121.60282 * 0.25797 * 5 4 3 23 23 C 1.32296 * 120.76272 * 359.47673 * 22 5 4 24 24 H 1.08996 * 109.46693 * 90.00216 * 1 2 3 25 25 H 1.09000 * 109.46830 * 209.99440 * 1 2 3 26 26 H 1.08996 * 109.47137 * 330.00063 * 1 2 3 27 27 H 1.08002 * 120.41788 * 359.95880 * 3 2 1 28 28 H 1.09005 * 109.52484 * 29.86753 * 7 6 5 29 29 H 1.09005 * 109.50142 * 57.68531 * 8 7 6 30 30 H 1.08998 * 109.50777 * 297.56428 * 8 7 6 31 31 H 1.08991 * 109.46218 * 180.80508 * 9 8 7 32 32 H 1.09005 * 109.44695 * 60.83538 * 9 8 7 33 33 H 1.09002 * 109.47401 * 49.99636 * 11 10 9 34 34 H 1.09001 * 109.46874 * 289.99649 * 11 10 9 35 35 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46266 * 58.27078 * 20 10 9 37 37 H 1.09002 * 109.46276 * 178.24270 * 20 10 9 38 38 H 1.09006 * 109.50444 * 299.24199 * 21 20 10 39 39 H 1.09003 * 109.50687 * 179.12283 * 21 20 10 40 40 H 1.07996 * 120.41700 * 180.23385 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1912 0.0000 4 7 3.5378 1.1551 0.0005 5 6 4.1834 0.0000 0.0005 6 8 5.5380 0.0001 0.0005 7 6 6.1867 -1.2731 0.0000 8 6 7.5326 -1.1614 -0.7217 9 6 8.2489 -2.5127 -0.6672 10 7 8.4550 -2.9028 0.7334 11 6 9.2618 -4.1270 0.8256 12 6 9.6588 -4.3601 2.2606 13 1 9.3429 -3.6683 3.0274 14 6 10.4243 -5.4571 2.5946 15 7 10.8084 -6.2998 1.6608 16 14 10.9157 -5.7464 4.3734 17 1 9.6952 -5.8936 5.2065 18 1 11.7314 -6.9838 4.4666 19 1 11.7117 -4.5915 4.8612 20 6 7.1745 -3.0624 1.4341 21 6 6.4261 -1.7276 1.4425 22 7 3.5379 -1.1551 -0.0051 23 6 2.2155 -1.1912 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6944 2.1372 -0.0007 28 1 5.5583 -2.0019 -0.5120 29 1 8.1460 -0.4045 -0.2327 30 1 7.3659 -0.8795 -1.7613 31 1 9.2138 -2.4326 -1.1677 32 1 7.6411 -3.2661 -1.1684 33 1 10.1574 -4.0188 0.2138 34 1 8.6776 -4.9749 0.4678 35 1 11.3473 -7.0714 1.8958 36 1 6.5719 -3.8134 0.9229 37 1 7.3591 -3.3817 2.4598 38 1 7.0220 -0.9795 1.9655 39 1 5.4688 -1.8502 1.9490 40 1 1.6944 -2.1372 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594020511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = 13.311918 kcal Electronic energy + Delta-G solvation = -21183.662325 eV Core-core repulsion = 17998.913983 eV Total energy + Delta-G solvation = -3184.748342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39990 -39.20924 -37.25459 -34.01962 -33.66143 -33.00933 -31.41087 -30.44733 -27.53399 -26.66518 -25.09184 -23.77173 -22.84929 -22.42017 -21.18503 -19.47047 -18.79285 -17.94466 -16.30087 -16.04138 -15.74275 -15.25411 -14.64441 -14.48825 -14.29070 -14.25753 -13.81145 -13.65464 -13.36526 -13.10323 -12.86731 -12.74693 -12.08368 -11.94105 -11.80148 -11.43690 -11.24479 -11.11989 -10.92757 -10.78839 -10.65841 -10.44280 -10.31154 -10.01013 -9.78168 -9.28214 -9.19231 -8.84895 -8.43251 -7.25917 -6.02678 -4.04110 0.80656 0.87269 2.53391 3.34070 3.37942 3.41193 3.58193 3.89038 4.34252 4.42327 4.46787 4.56772 4.63143 4.86009 5.01994 5.09591 5.20505 5.26301 5.32840 5.42656 5.48162 5.61912 5.65753 5.76896 5.80767 5.96592 6.08797 6.14251 6.17320 6.32114 6.42564 6.59217 6.68005 6.70492 7.17729 7.28951 7.33973 7.79629 7.96890 8.08159 8.18805 8.54096 9.03224 9.60127 11.08199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003352 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.278992 B = 8350.943106 C = 8725.445912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.246 4.246 3 C 0.186 3.814 4 N -0.526 5.526 5 C 0.502 3.498 6 O -0.283 6.283 7 C 0.095 3.905 8 C -0.110 4.110 9 C 0.061 3.939 10 N -0.538 5.538 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.071 3.929 21 C -0.129 4.129 22 N -0.561 5.561 23 C 0.188 3.812 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.173 0.827 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.032 0.968 34 H -0.008 1.008 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.028 11.710 -5.120 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.251 4.251 3 C 0.020 3.980 4 N -0.251 5.251 5 C 0.201 3.799 6 O -0.184 6.184 7 C 0.039 3.961 8 C -0.148 4.148 9 C -0.068 4.068 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.057 4.057 21 C -0.167 4.167 22 N -0.290 5.290 23 C 0.022 3.978 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.190 0.810 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.307 12.079 -4.925 22.478 hybrid contribution -1.062 -1.101 0.531 1.620 sum -19.369 10.977 -4.394 22.693 Atomic orbital electron populations 1.20527 0.89064 1.03245 1.02536 1.21495 0.99152 0.95443 1.08974 1.22993 0.87687 0.98434 0.88931 1.67625 1.10106 1.28075 1.19327 1.20816 0.86544 0.84675 0.87890 1.86163 1.11720 1.34837 1.85667 1.22747 0.93189 0.81685 0.98490 1.21731 0.93674 0.99775 0.99598 1.21955 0.99354 0.93739 0.91780 1.62072 1.15616 1.38227 1.10438 1.19706 0.91814 0.83728 0.97855 1.21131 1.32232 1.08329 0.93055 0.91870 1.24987 0.96067 0.95948 0.97577 1.69947 1.37268 1.13971 1.32668 0.86559 0.78566 0.77457 0.84820 1.20278 1.21362 1.20132 1.21857 0.89479 0.93248 1.01160 1.22071 1.00311 0.99424 0.94926 1.68107 1.11210 1.29376 1.20266 1.22922 0.88103 0.98415 0.88369 0.91056 0.91167 0.91197 0.81021 0.89449 0.90012 0.91510 0.90327 0.95734 0.95033 0.99059 0.92857 0.95901 0.89209 0.90546 0.92001 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.06 36.01 0.36 -0.07 16 2 C -0.25 -2.03 5.91 -104.36 -0.62 -2.64 16 3 C 0.19 1.78 11.00 -17.22 -0.19 1.60 16 4 N -0.53 -7.31 10.46 -14.73 -0.15 -7.47 16 5 C 0.50 7.66 8.46 -91.24 -0.77 6.89 16 6 O -0.28 -4.69 9.85 -18.06 -0.18 -4.87 16 7 C 0.10 1.53 2.43 -26.61 -0.06 1.47 16 8 C -0.11 -1.73 5.75 -26.65 -0.15 -1.89 16 9 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 10 N -0.54 -11.73 4.65 -236.11 -1.10 -12.83 16 11 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 12 C -0.51 -14.33 8.43 -34.44 -0.29 -14.62 16 13 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.07 1.42 5.29 -3.84 -0.02 1.40 16 21 C -0.13 -2.21 5.72 -26.65 -0.15 -2.36 16 22 N -0.56 -7.75 8.66 -14.73 -0.13 -7.87 16 23 C 0.19 1.88 11.00 -17.22 -0.19 1.69 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 26 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 27 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.09 1.42 6.95 -51.93 -0.36 1.06 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.87 7.99 -51.93 -0.41 0.46 16 34 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.93 6.70 -51.93 -0.35 1.58 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -32.33 329.98 -9.21 -41.54 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.12 Total: -3.21 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.23 Total: -0.94 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.64 Total: -54.20 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.18 Total: -4.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.33 -9.21 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594020511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.856 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds