Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38587 * 120.73723 * 2 1 4 4 N 1.32295 * 119.17602 * 179.97438 * 3 2 1 5 5 C 1.32327 * 120.76094 * 0.02562 * 4 3 2 6 6 O 1.35455 * 119.19580 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99728 * 180.02562 * 6 5 4 8 8 C 1.53120 * 109.52570 * 149.99420 * 7 6 5 9 9 C 1.53041 * 109.28182 * 177.61748 * 8 7 6 10 10 N 1.46849 * 109.52442 * 300.82868 * 9 8 7 11 11 C 1.46901 * 110.99649 * 185.83742 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99608 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46839 * 111.20047 * 61.73811 * 10 9 8 21 21 C 1.53034 * 109.52552 * 298.25821 * 20 10 9 22 22 N 1.32320 * 121.60282 * 0.25797 * 5 4 3 23 23 C 1.32296 * 120.76272 * 359.47673 * 22 5 4 24 24 H 1.08996 * 109.46693 * 90.00216 * 1 2 3 25 25 H 1.09000 * 109.46830 * 209.99440 * 1 2 3 26 26 H 1.08996 * 109.47137 * 330.00063 * 1 2 3 27 27 H 1.08002 * 120.41788 * 359.95880 * 3 2 1 28 28 H 1.09005 * 109.52484 * 29.86753 * 7 6 5 29 29 H 1.09005 * 109.50142 * 57.68531 * 8 7 6 30 30 H 1.08998 * 109.50777 * 297.56428 * 8 7 6 31 31 H 1.08991 * 109.46218 * 180.80508 * 9 8 7 32 32 H 1.09005 * 109.44695 * 60.83538 * 9 8 7 33 33 H 1.09002 * 109.47401 * 49.99636 * 11 10 9 34 34 H 1.09001 * 109.46874 * 289.99649 * 11 10 9 35 35 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46266 * 58.27078 * 20 10 9 37 37 H 1.09002 * 109.46276 * 178.24270 * 20 10 9 38 38 H 1.09006 * 109.50444 * 299.24199 * 21 20 10 39 39 H 1.09003 * 109.50687 * 179.12283 * 21 20 10 40 40 H 1.07996 * 120.41700 * 180.23385 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1912 0.0000 4 7 3.5378 1.1551 0.0005 5 6 4.1834 0.0000 0.0005 6 8 5.5380 0.0001 0.0005 7 6 6.1867 -1.2731 0.0000 8 6 7.5326 -1.1614 -0.7217 9 6 8.2489 -2.5127 -0.6672 10 7 8.4550 -2.9028 0.7334 11 6 9.2618 -4.1270 0.8256 12 6 9.6588 -4.3601 2.2606 13 1 9.3429 -3.6683 3.0274 14 6 10.4243 -5.4571 2.5946 15 7 10.8084 -6.2998 1.6608 16 14 10.9157 -5.7464 4.3734 17 1 9.6952 -5.8936 5.2065 18 1 11.7314 -6.9838 4.4666 19 1 11.7117 -4.5915 4.8612 20 6 7.1745 -3.0624 1.4341 21 6 6.4261 -1.7276 1.4425 22 7 3.5379 -1.1551 -0.0051 23 6 2.2155 -1.1912 -0.0005 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6944 2.1372 -0.0007 28 1 5.5583 -2.0019 -0.5120 29 1 8.1460 -0.4045 -0.2327 30 1 7.3659 -0.8795 -1.7613 31 1 9.2138 -2.4326 -1.1677 32 1 7.6411 -3.2661 -1.1684 33 1 10.1574 -4.0188 0.2138 34 1 8.6776 -4.9749 0.4678 35 1 11.3473 -7.0714 1.8958 36 1 6.5719 -3.8134 0.9229 37 1 7.3591 -3.3817 2.4598 38 1 7.0220 -0.9795 1.9655 39 1 5.4688 -1.8502 1.9490 40 1 1.6944 -2.1372 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594020511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -10.565977 kcal Electronic energy + Delta-G solvation = -21184.697748 eV Core-core repulsion = 17998.913983 eV Total energy + Delta-G solvation = -3185.783766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31081 -40.47050 -38.68520 -35.28732 -34.84128 -34.22569 -33.06232 -31.93057 -28.96810 -27.87601 -26.07489 -25.23216 -24.24204 -23.56347 -22.83605 -20.91805 -19.84735 -18.90558 -18.44634 -17.20593 -17.04444 -16.45355 -16.10978 -15.90646 -15.35722 -15.27796 -15.25778 -14.86214 -14.45426 -14.38418 -14.06523 -13.83512 -13.51667 -13.24685 -13.09554 -12.99180 -12.77052 -12.48905 -12.31975 -12.23231 -12.08842 -12.02148 -11.88606 -11.55132 -11.47753 -11.14481 -10.61375 -10.16715 -9.70452 -9.06965 -8.21098 -6.31173 -0.02907 0.08571 1.40811 1.44028 1.49169 1.51935 2.39930 2.71784 3.02519 3.10762 3.21744 3.56870 3.68168 3.70682 3.71738 3.98787 4.03326 4.10049 4.16692 4.32278 4.46976 4.51882 4.69135 4.71920 4.74958 4.88979 4.91770 4.93933 5.04614 5.05895 5.11213 5.14995 5.25239 5.30804 5.44162 5.63963 5.71854 6.03602 6.19803 6.29040 6.59927 6.84084 7.05439 7.38380 8.89883 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003352 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.278992 B = 8350.943106 C = 8725.445912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.222 4.222 3 C 0.175 3.825 4 N -0.553 5.553 5 C 0.472 3.528 6 O -0.299 6.299 7 C 0.106 3.894 8 C -0.100 4.100 9 C 0.060 3.940 10 N -0.547 5.547 11 C 0.209 3.791 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.076 3.924 21 C -0.115 4.115 22 N -0.583 5.583 23 C 0.171 3.829 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.209 0.791 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.009 0.991 34 H -0.035 1.035 35 H 0.265 0.735 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.440 12.750 -4.644 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.226 4.226 3 C 0.011 3.989 4 N -0.278 5.278 5 C 0.170 3.830 6 O -0.201 6.201 7 C 0.049 3.951 8 C -0.138 4.138 9 C -0.068 4.068 10 N -0.272 5.272 11 C 0.083 3.917 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.052 4.052 21 C -0.153 4.153 22 N -0.312 5.312 23 C 0.006 3.994 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.226 0.774 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.027 0.973 34 H -0.018 1.018 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -20.776 13.141 -4.455 24.983 hybrid contribution -0.508 -1.380 0.326 1.506 sum -21.284 11.762 -4.129 24.666 Atomic orbital electron populations 1.20651 0.85877 1.04759 1.03833 1.21921 1.01132 0.94213 1.05377 1.23727 0.86482 1.00627 0.88103 1.67608 1.12166 1.27918 1.20145 1.20897 0.86070 0.85696 0.90371 1.86086 1.13197 1.34263 1.86592 1.22482 0.93259 0.82085 0.97269 1.21619 0.93222 0.97803 1.01133 1.22025 1.00028 0.95173 0.89614 1.61992 1.16445 1.35728 1.13004 1.19359 0.91175 0.84625 0.96576 1.21439 1.32488 1.08617 0.93923 0.91973 1.25897 0.95850 0.95540 1.02234 1.70072 1.37870 1.14500 1.34961 0.85451 0.78505 0.77550 0.79205 1.19230 1.20717 1.19410 1.21776 0.88842 0.94940 0.99660 1.21890 0.99907 0.97340 0.96170 1.68061 1.13107 1.29056 1.20992 1.23563 0.87134 1.00536 0.88138 0.89626 0.89941 0.89477 0.77399 0.89621 0.90400 0.89048 0.90096 0.95461 0.97320 1.01767 0.92615 0.96145 0.91191 0.91286 0.91223 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.06 71.24 0.72 0.26 16 2 C -0.22 -3.00 5.91 -19.69 -0.12 -3.12 16 3 C 0.18 2.94 11.00 84.71 0.93 3.87 16 4 N -0.55 -14.83 10.46 -313.47 -3.28 -18.11 16 5 C 0.47 14.22 8.46 180.57 1.53 15.75 16 6 O -0.30 -9.92 9.85 -87.53 -0.86 -10.79 16 7 C 0.11 3.40 2.43 30.68 0.07 3.47 16 8 C -0.10 -3.11 5.75 30.65 0.18 -2.94 16 9 C 0.06 2.20 5.46 86.33 0.47 2.67 16 10 N -0.55 -24.49 4.65 -900.93 -4.19 -28.68 16 11 C 0.21 11.34 4.72 85.56 0.40 11.75 16 12 C -0.53 -30.34 8.43 25.60 0.22 -30.13 16 13 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 16 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.08 3.11 5.29 86.33 0.46 3.57 16 21 C -0.11 -3.97 5.72 30.65 0.18 -3.79 16 22 N -0.58 -15.65 8.66 -313.47 -2.71 -18.36 16 23 C 0.17 3.06 11.00 84.71 0.93 4.00 16 24 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.08 0.27 8.10 -2.39 -0.02 0.25 16 26 H 0.09 0.19 8.10 -2.39 -0.02 0.17 16 27 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.09 2.78 6.95 -2.38 -0.02 2.76 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.91 8.01 -2.39 -0.02 2.89 16 32 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.01 0.50 7.99 -2.39 -0.02 0.49 16 34 H -0.04 -2.07 8.12 -2.39 -0.02 -2.09 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 3.10 6.70 -2.39 -0.02 3.09 16 38 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 40 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.87 329.98 -1.29 -73.15 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.02 Total: 6.37 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.43 Total: 6.00 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -9.90 Total: -121.52 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.86 Total: -10.79 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.87 -1.29 -73.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594020511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.585 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds