Wall clock time and date at job start Mon Mar 30 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38622 * 120.44818 * 2 1 4 4 C 1.38577 * 118.39772 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.44795 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47223 * 94.99504 * 5 4 3 7 7 C 1.47443 * 111.00227 * 69.87126 * 6 5 4 8 8 C 1.54312 * 107.23612 * 236.74273 * 7 6 5 9 9 C 1.55142 * 103.17714 * 337.62814 * 8 7 6 10 10 O 1.42900 * 110.99267 * 277.64922 * 9 8 7 11 11 C 1.50700 * 110.99048 * 153.83199 * 9 8 7 12 12 H 1.08004 * 119.99851 * 241.45911 * 11 9 8 13 13 C 1.37875 * 120.00057 * 61.45406 * 11 9 8 14 14 N 1.31517 * 120.00100 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00140 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46947 * 60.00160 * 15 13 11 17 17 H 1.48494 * 109.47096 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47157 * 300.00184 * 15 13 11 19 19 C 1.47844 * 110.99982 * 309.02970 * 6 5 4 20 20 N 1.32344 * 119.10537 * 0.26124 * 4 3 2 21 21 C 1.31782 * 120.81887 * 359.45154 * 20 4 3 22 22 C 1.50704 * 119.12431 * 180.26091 * 21 20 4 23 23 N 1.31813 * 121.75664 * 0.57148 * 21 20 4 24 24 H 1.09004 * 109.46812 * 90.00465 * 1 2 3 25 25 H 1.08994 * 109.47324 * 210.00666 * 1 2 3 26 26 H 1.08998 * 109.47306 * 330.01058 * 1 2 3 27 27 H 1.07991 * 120.80025 * 359.94411 * 3 2 1 28 28 H 1.08999 * 109.47013 * 334.99479 * 5 4 3 29 29 H 1.08994 * 109.47127 * 214.99305 * 5 4 3 30 30 H 1.08997 * 109.88254 * 117.33308 * 7 6 5 31 31 H 1.09003 * 109.88840 * 356.15438 * 7 6 5 32 32 H 1.09002 * 110.70596 * 96.10119 * 8 7 6 33 33 H 1.09005 * 110.70742 * 219.16269 * 8 7 6 34 34 H 0.96696 * 113.99925 * 298.54409 * 10 9 8 35 35 H 0.96993 * 120.00152 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.37744 * 265.19940 * 19 6 5 37 37 H 1.09008 * 110.37208 * 27.53592 * 19 6 5 38 38 H 1.09004 * 109.47290 * 270.29871 * 22 21 20 39 39 H 1.09007 * 109.46920 * 30.29902 * 22 21 20 40 40 H 1.08997 * 109.47307 * 150.29703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4041 2.4165 0.0000 6 7 4.7684 2.7656 1.3796 7 6 5.7569 1.8155 1.9217 8 6 5.1558 1.2157 3.2102 9 6 4.1065 2.2755 3.6376 10 8 4.7232 3.3457 4.3562 11 6 3.0044 1.6466 4.4506 12 1 1.9856 1.6760 4.0933 13 6 3.2967 1.0338 5.6506 14 7 4.5372 0.9983 6.0859 15 14 1.9305 0.2549 6.6587 16 1 1.2737 -0.8121 5.8616 17 1 2.5023 -0.3325 7.8969 18 1 0.9294 1.2907 7.0194 19 6 3.5797 2.7610 2.2588 20 7 4.1963 -0.0331 -0.0042 21 6 3.4956 -1.1492 0.0014 22 6 4.2205 -2.4704 0.0016 23 7 2.1775 -1.1407 0.0007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5137 27 1 1.6900 2.1418 -0.0009 28 1 3.8139 3.2230 -0.4352 29 1 5.3095 2.2702 -0.5889 30 1 6.6849 2.3381 2.1537 31 1 5.9461 1.0235 1.1971 32 1 4.6754 0.2595 3.0025 33 1 5.9226 1.1017 3.9765 34 1 5.1546 3.0711 5.1769 35 1 4.7428 0.5675 6.9302 36 1 3.1664 3.7660 2.3434 37 1 2.8273 2.0713 1.8760 38 1 4.3957 -2.7890 -1.0260 39 1 5.1753 -2.3609 0.5159 40 1 3.6148 -3.2171 0.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595561247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:05 Heat of formation + Delta-G solvation = 1.314234 kcal Electronic energy + Delta-G solvation = -22734.641856 eV Core-core repulsion = 19549.373255 eV Total energy + Delta-G solvation = -3185.268601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06338 -38.38168 -35.25182 -34.22748 -33.02639 -32.13242 -29.95475 -29.08580 -28.40060 -27.61339 -26.06711 -24.15578 -22.13499 -21.59112 -19.88810 -19.48541 -17.41726 -17.08738 -15.77695 -15.45042 -15.18635 -14.88827 -14.73539 -14.44294 -13.88658 -13.50207 -13.34369 -13.07026 -12.73885 -12.64778 -12.38357 -12.17692 -12.04242 -11.88974 -11.53835 -11.25331 -11.09761 -10.94206 -10.73701 -10.65158 -10.46161 -10.28752 -10.11681 -9.83496 -9.18534 -9.09724 -8.98702 -8.59512 -8.08431 -7.68717 -6.21165 -4.29315 1.13899 1.29552 3.22202 3.26919 3.29617 3.89542 4.08286 4.20433 4.28771 4.53433 4.75920 5.06587 5.13646 5.23868 5.40716 5.43429 5.49830 5.58824 5.61940 5.66995 5.76170 5.82299 5.90735 6.00093 6.06479 6.10406 6.19066 6.25460 6.53209 6.65535 6.69516 6.86113 7.09685 7.29788 7.43248 7.49556 7.58826 7.66951 7.81742 8.15769 8.37382 8.71634 9.38948 9.51550 10.85799 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.007616 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.717341 B = 3675.637735 C = 4388.836375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.176 3.824 3 C -0.222 4.222 4 C 0.159 3.841 5 C 0.094 3.906 6 N -0.508 5.508 7 C 0.033 3.967 8 C -0.137 4.137 9 C 0.254 3.746 10 O -0.579 6.579 11 C -0.535 4.535 12 H 0.057 0.943 13 C 0.073 3.927 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.044 3.956 20 N -0.510 5.510 21 C 0.319 3.681 22 C -0.082 4.082 23 N -0.525 5.525 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.377 0.623 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -2.592 -12.222 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.030 3.970 3 C -0.245 4.245 4 C 0.010 3.990 5 C -0.035 4.035 6 N -0.230 5.230 7 C -0.094 4.094 8 C -0.176 4.176 9 C 0.213 3.787 10 O -0.387 6.387 11 C -0.574 4.574 12 H 0.075 0.925 13 C -0.129 4.129 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.083 4.083 20 N -0.227 5.227 21 C 0.052 3.948 22 C -0.140 4.140 23 N -0.242 5.242 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.161 0.839 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.226 0.774 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.263 -2.645 -12.595 13.067 hybrid contribution -1.346 -0.870 1.195 1.999 sum -3.609 -3.515 -11.400 12.463 Atomic orbital electron populations 1.20750 0.88132 1.04195 1.03081 1.21633 0.97363 0.88214 0.89800 1.22563 0.95893 1.00363 1.05677 1.22701 0.92180 0.95183 0.88910 1.21570 0.98503 0.89468 0.93957 1.64006 1.11727 1.47307 0.99998 1.22978 0.95347 0.93623 0.97469 1.23158 1.00266 0.99092 0.95118 1.19591 0.89167 0.83019 0.86891 1.86131 1.75530 1.37053 1.40014 1.21438 0.94226 1.36242 1.05451 0.92525 1.24971 0.95722 0.94999 0.97243 1.69725 1.17693 1.44341 1.21485 0.86583 0.82089 0.79551 0.79400 1.20243 1.21025 1.19972 1.23351 0.91175 1.00623 0.93144 1.68121 1.41445 0.98198 1.14890 1.23163 0.86664 0.94722 0.90268 1.20515 1.00081 0.90214 1.03233 1.68034 1.09773 1.30449 1.15927 0.90097 0.90058 0.90066 0.83899 0.89231 0.89223 0.91699 0.92201 0.93245 0.90653 0.77408 0.92323 0.91057 0.92707 0.90092 0.89634 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.22 36.01 0.37 -0.83 16 2 C 0.18 2.74 6.82 -82.24 -0.56 2.17 16 3 C -0.22 -3.46 7.48 -39.31 -0.29 -3.76 16 4 C 0.16 2.68 4.87 -82.25 -0.40 2.28 16 5 C 0.09 1.51 5.66 -4.98 -0.03 1.48 16 6 N -0.51 -10.00 5.41 -232.38 -1.26 -11.26 16 7 C 0.03 0.69 6.44 -2.84 -0.02 0.67 16 8 C -0.14 -3.31 5.36 -24.91 -0.13 -3.45 16 9 C 0.25 6.45 0.88 -89.38 -0.08 6.37 16 10 O -0.58 -15.45 13.16 -35.23 -0.46 -15.92 16 11 C -0.54 -14.68 8.28 -34.44 -0.29 -14.96 16 12 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 13 C 0.07 1.98 5.29 -17.82 -0.09 1.89 16 14 N -0.89 -24.33 10.75 55.43 0.60 -23.73 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.04 0.97 5.67 -2.04 -0.01 0.95 16 20 N -0.51 -9.03 8.95 -6.99 -0.06 -9.09 16 21 C 0.32 5.40 7.64 -157.19 -1.20 4.20 16 22 C -0.08 -1.07 10.32 36.01 0.37 -0.70 16 23 N -0.53 -8.93 10.27 -6.98 -0.07 -9.00 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.14 1.88 8.05 -52.49 -0.42 1.45 16 28 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 29 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.18 6.20 -51.93 -0.32 0.86 16 32 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 33 H 0.07 1.93 7.53 -51.93 -0.39 1.54 16 34 H 0.38 10.10 7.56 45.56 0.34 10.45 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.05 1.18 4.46 -51.92 -0.23 0.95 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -30.47 323.46 -8.97 -39.45 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.20 Total: 12.26 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.37 Total: -3.68 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.80 Total: -53.09 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.46 Total: -15.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.47 -8.97 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595561247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds