Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38622 * 120.44818 * 2 1 4 4 C 1.38577 * 118.39772 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.44795 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47223 * 94.99504 * 5 4 3 7 7 C 1.47443 * 111.00227 * 69.87126 * 6 5 4 8 8 C 1.54312 * 107.23612 * 236.74273 * 7 6 5 9 9 C 1.55142 * 103.17714 * 337.62814 * 8 7 6 10 10 O 1.42900 * 110.99267 * 277.64922 * 9 8 7 11 11 C 1.50700 * 110.99048 * 153.83199 * 9 8 7 12 12 H 1.08004 * 119.99851 * 241.45911 * 11 9 8 13 13 C 1.37875 * 120.00057 * 61.45406 * 11 9 8 14 14 N 1.31517 * 120.00100 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00140 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46947 * 60.00160 * 15 13 11 17 17 H 1.48494 * 109.47096 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47157 * 300.00184 * 15 13 11 19 19 C 1.47844 * 110.99982 * 309.02970 * 6 5 4 20 20 N 1.32344 * 119.10537 * 0.26124 * 4 3 2 21 21 C 1.31782 * 120.81887 * 359.45154 * 20 4 3 22 22 C 1.50704 * 119.12431 * 180.26091 * 21 20 4 23 23 N 1.31813 * 121.75664 * 0.57148 * 21 20 4 24 24 H 1.09004 * 109.46812 * 90.00465 * 1 2 3 25 25 H 1.08994 * 109.47324 * 210.00666 * 1 2 3 26 26 H 1.08998 * 109.47306 * 330.01058 * 1 2 3 27 27 H 1.07991 * 120.80025 * 359.94411 * 3 2 1 28 28 H 1.08999 * 109.47013 * 334.99479 * 5 4 3 29 29 H 1.08994 * 109.47127 * 214.99305 * 5 4 3 30 30 H 1.08997 * 109.88254 * 117.33308 * 7 6 5 31 31 H 1.09003 * 109.88840 * 356.15438 * 7 6 5 32 32 H 1.09002 * 110.70596 * 96.10119 * 8 7 6 33 33 H 1.09005 * 110.70742 * 219.16269 * 8 7 6 34 34 H 0.96696 * 113.99925 * 298.54409 * 10 9 8 35 35 H 0.96993 * 120.00152 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.37744 * 265.19940 * 19 6 5 37 37 H 1.09008 * 110.37208 * 27.53592 * 19 6 5 38 38 H 1.09004 * 109.47290 * 270.29871 * 22 21 20 39 39 H 1.09007 * 109.46920 * 30.29902 * 22 21 20 40 40 H 1.08997 * 109.47307 * 150.29703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4041 2.4165 0.0000 6 7 4.7684 2.7656 1.3796 7 6 5.7569 1.8155 1.9217 8 6 5.1558 1.2157 3.2102 9 6 4.1065 2.2755 3.6376 10 8 4.7232 3.3457 4.3562 11 6 3.0044 1.6466 4.4506 12 1 1.9856 1.6760 4.0933 13 6 3.2967 1.0338 5.6506 14 7 4.5372 0.9983 6.0859 15 14 1.9305 0.2549 6.6587 16 1 1.2737 -0.8121 5.8616 17 1 2.5023 -0.3325 7.8969 18 1 0.9294 1.2907 7.0194 19 6 3.5797 2.7610 2.2588 20 7 4.1963 -0.0331 -0.0042 21 6 3.4956 -1.1492 0.0014 22 6 4.2205 -2.4704 0.0016 23 7 2.1775 -1.1407 0.0007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5137 27 1 1.6900 2.1418 -0.0009 28 1 3.8139 3.2230 -0.4352 29 1 5.3095 2.2702 -0.5889 30 1 6.6849 2.3381 2.1537 31 1 5.9461 1.0235 1.1971 32 1 4.6754 0.2595 3.0025 33 1 5.9226 1.1017 3.9765 34 1 5.1546 3.0711 5.1769 35 1 4.7428 0.5675 6.9302 36 1 3.1664 3.7660 2.3434 37 1 2.8273 2.0713 1.8760 38 1 4.3957 -2.7890 -1.0260 39 1 5.1753 -2.3609 0.5159 40 1 3.6148 -3.2171 0.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595561247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -20.992217 kcal Electronic energy + Delta-G solvation = -22735.609136 eV Core-core repulsion = 19549.373255 eV Total energy + Delta-G solvation = -3186.235881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30137 -40.06589 -36.99428 -35.40437 -34.45409 -34.21875 -31.58818 -30.12287 -30.08060 -28.95865 -27.71051 -25.91094 -23.35651 -22.91297 -21.68847 -21.18426 -19.11593 -18.64668 -17.19296 -16.96896 -16.86292 -16.58193 -16.17014 -15.88550 -15.62797 -14.95192 -14.50125 -14.35425 -14.25253 -14.02920 -13.76022 -13.50492 -13.27067 -13.16487 -13.12951 -13.07295 -12.86454 -12.69858 -12.43315 -12.31603 -12.23079 -11.90174 -11.66404 -11.38606 -11.12512 -10.65660 -10.37631 -10.18862 -10.12684 -9.25941 -8.26723 -6.42392 -0.07431 0.07608 1.34494 1.35153 1.42750 2.31815 2.67325 2.92669 2.97848 3.04699 3.20033 3.46173 3.89895 4.01562 4.03789 4.10355 4.16436 4.36653 4.38099 4.45581 4.55862 4.63837 4.66970 4.69953 4.71122 4.79022 4.87942 4.92200 5.00101 5.03488 5.11075 5.22718 5.43168 5.47988 5.54306 5.73084 5.85700 6.09743 6.12126 6.17301 6.62075 7.14544 7.28773 7.40322 8.78476 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.007616 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.717341 B = 3675.637735 C = 4388.836375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.163 3.837 3 C -0.229 4.229 4 C 0.141 3.859 5 C 0.095 3.905 6 N -0.509 5.509 7 C 0.045 3.955 8 C -0.123 4.123 9 C 0.236 3.764 10 O -0.586 6.586 11 C -0.559 4.559 12 H 0.050 0.950 13 C 0.032 3.968 14 N -0.909 5.909 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.269 1.269 19 C 0.055 3.945 20 N -0.530 5.530 21 C 0.299 3.701 22 C -0.079 4.079 23 N -0.542 5.542 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.167 0.833 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.371 0.629 35 H 0.269 0.731 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -2.506 -13.279 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.017 3.983 3 C -0.251 4.251 4 C -0.007 4.007 5 C -0.033 4.033 6 N -0.231 5.231 7 C -0.083 4.083 8 C -0.162 4.162 9 C 0.196 3.804 10 O -0.394 6.394 11 C -0.598 4.598 12 H 0.068 0.932 13 C -0.169 4.169 14 N -0.548 5.548 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.072 4.072 20 N -0.246 5.246 21 C 0.032 3.968 22 C -0.137 4.137 23 N -0.259 5.259 24 H 0.125 0.875 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.184 0.816 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.220 0.780 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.341 -2.551 -13.668 14.300 hybrid contribution -1.023 -0.913 1.499 2.031 sum -4.364 -3.465 -12.169 13.384 Atomic orbital electron populations 1.20863 0.85436 1.04653 1.04868 1.22334 0.99261 0.87949 0.88715 1.22865 0.95579 1.01507 1.05140 1.22891 0.93042 0.95244 0.89495 1.21725 0.99712 0.90199 0.91700 1.63945 1.10629 1.47167 1.01400 1.22837 0.95488 0.93962 0.95974 1.22892 0.99255 0.97844 0.96231 1.19835 0.89109 0.83249 0.88175 1.86124 1.75587 1.37765 1.39876 1.21704 0.94507 1.37128 1.06423 0.93186 1.25664 0.97774 0.95353 0.98151 1.69814 1.18911 1.44430 1.21670 0.85684 0.79651 0.78693 0.78076 1.20260 1.20331 1.19403 1.23171 0.91951 1.00430 0.91655 1.68131 1.42020 0.98751 1.15739 1.23816 0.87155 0.95736 0.90093 1.20602 0.99567 0.88800 1.04771 1.68127 1.09919 1.31281 1.16605 0.87510 0.90425 0.88705 0.81554 0.86274 0.87930 0.91453 0.91181 0.95726 0.92925 0.78032 0.92200 0.91125 0.92260 0.87732 0.89873 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 10.22 71.24 0.73 -1.37 16 2 C 0.16 4.82 6.82 42.58 0.29 5.11 16 3 C -0.23 -6.68 7.48 22.44 0.17 -6.52 16 4 C 0.14 4.55 4.87 42.56 0.21 4.76 16 5 C 0.10 2.82 5.66 85.56 0.48 3.30 16 6 N -0.51 -19.28 5.41 -889.11 -4.81 -24.09 16 7 C 0.04 1.83 6.44 86.64 0.56 2.39 16 8 C -0.12 -6.02 5.36 31.77 0.17 -5.85 16 9 C 0.24 12.07 0.88 -9.99 -0.01 12.06 16 10 O -0.59 -31.55 13.16 -148.98 -1.96 -33.51 16 11 C -0.56 -30.86 8.28 25.60 0.21 -30.64 16 12 H 0.05 2.75 7.79 -2.91 -0.02 2.72 16 13 C 0.03 1.71 5.29 84.65 0.45 2.16 16 14 N -0.91 -50.02 10.75 21.45 0.23 -49.79 16 15 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 19 C 0.06 2.37 5.67 86.94 0.49 2.87 16 20 N -0.53 -18.30 8.95 -176.02 -1.58 -19.88 16 21 C 0.30 9.93 7.64 138.75 1.06 10.99 16 22 C -0.08 -2.01 10.32 71.24 0.74 -1.27 16 23 N -0.54 -17.95 10.27 -176.00 -1.81 -19.75 16 24 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 27 H 0.17 3.90 8.05 -2.92 -0.02 3.88 16 28 H 0.12 2.82 8.06 -2.39 -0.02 2.80 16 29 H 0.10 2.78 8.04 -2.39 -0.02 2.76 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 2.71 6.20 -2.39 -0.01 2.69 16 32 H 0.02 1.28 8.03 -2.39 -0.02 1.26 16 33 H 0.05 2.76 7.53 -2.38 -0.02 2.75 16 34 H 0.37 20.34 7.56 -74.06 -0.56 19.78 16 35 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.06 2.49 4.46 -2.38 -0.01 2.48 16 38 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.04 323.46 -1.87 -66.90 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.49 Total: 36.89 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.55 Total: -2.02 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -7.97 Total: -113.51 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.96 Total: -33.51 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -65.04 -1.87 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595561247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.910 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds