Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38619 * 120.45092 * 2 1 4 4 C 1.38574 * 118.40081 * 180.25849 * 3 2 1 5 5 C 1.50693 * 120.45007 * 179.72235 * 4 3 2 6 6 N 1.46903 * 109.47266 * 94.99684 * 5 4 3 7 7 C 1.47439 * 110.99892 * 69.87331 * 6 5 4 8 8 C 1.54324 * 107.23088 * 123.26298 * 7 6 5 9 9 C 1.55134 * 103.02139 * 22.28288 * 8 7 6 10 10 O 1.42896 * 110.99275 * 82.47618 * 9 8 7 11 11 C 1.50700 * 110.99176 * 206.25607 * 9 8 7 12 12 H 1.07999 * 119.99968 * 118.54632 * 11 9 8 13 13 C 1.37874 * 119.99967 * 298.54611 * 11 9 8 14 14 N 1.31508 * 120.00179 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99835 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47321 * 59.99654 * 15 13 11 17 17 H 1.48499 * 109.47104 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47063 * 300.00169 * 15 13 11 19 19 C 1.47839 * 111.00443 * 190.72131 * 6 5 4 20 20 N 1.32353 * 119.10120 * 359.44005 * 4 3 2 21 21 C 1.31778 * 120.82199 * 0.57366 * 20 4 3 22 22 C 1.50696 * 119.12326 * 179.68585 * 21 20 4 23 23 N 1.31807 * 121.75360 * 359.69978 * 21 20 4 24 24 H 1.09001 * 109.47078 * 89.99834 * 1 2 3 25 25 H 1.08998 * 109.47004 * 210.00031 * 1 2 3 26 26 H 1.09000 * 109.46685 * 329.99727 * 1 2 3 27 27 H 1.08002 * 120.79619 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47763 * 214.99921 * 5 4 3 29 29 H 1.08999 * 109.47028 * 335.00241 * 5 4 3 30 30 H 1.09003 * 109.88917 * 242.66313 * 7 6 5 31 31 H 1.08993 * 109.89196 * 3.85555 * 7 6 5 32 32 H 1.09002 * 110.70480 * 140.66997 * 8 7 6 33 33 H 1.09004 * 110.70393 * 263.72436 * 8 7 6 34 34 H 0.96703 * 113.99944 * 61.44826 * 10 9 8 35 35 H 0.97000 * 120.00109 * 180.02562 * 14 13 11 36 36 H 1.09008 * 110.37051 * 332.46366 * 19 6 5 37 37 H 1.09003 * 110.37727 * 94.80170 * 19 6 5 38 38 H 1.08999 * 109.46887 * 270.02108 * 22 21 20 39 39 H 1.09003 * 109.47534 * 30.01774 * 22 21 20 40 40 H 1.08997 * 109.47627 * 150.02271 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 -0.0055 5 6 4.4040 2.4163 -0.0120 6 7 4.7745 2.7681 1.3653 7 6 5.7655 1.8189 1.9047 8 6 6.9950 2.6419 2.3435 9 6 6.4080 4.0624 2.5534 10 8 5.8006 4.1802 3.8415 11 6 7.4662 5.1178 2.3603 12 1 7.3572 5.8552 1.5788 13 6 8.5736 5.1420 3.1813 14 7 8.7061 4.2445 4.1333 15 14 9.8850 6.4507 2.9424 16 1 9.2798 7.7956 3.1164 17 1 10.9638 6.2593 3.9447 18 1 10.4542 6.3373 1.5755 19 6 5.3444 4.1307 1.4292 20 7 4.1963 -0.0333 0.0008 21 6 3.4956 -1.1493 0.0008 22 6 4.2205 -2.4705 0.0008 23 7 2.1776 -1.1408 0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6900 2.1418 -0.0004 28 1 5.3069 2.2691 -0.6047 29 1 3.8119 3.2221 -0.4460 30 1 5.3463 1.2926 2.7623 31 1 6.0533 1.1049 1.1331 32 1 7.4063 2.2532 3.2752 33 1 7.7542 2.6474 1.5614 34 1 6.4124 4.0475 4.5785 35 1 9.4850 4.2618 4.7112 36 1 5.8121 4.3913 0.4797 37 1 4.5699 4.8545 1.6830 38 1 4.3956 -2.7888 -1.0269 39 1 5.1754 -2.3611 0.5149 40 1 3.6149 -3.2173 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595561248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -2.768182 kcal Electronic energy + Delta-G solvation = -21657.226029 eV Core-core repulsion = 18471.780401 eV Total energy + Delta-G solvation = -3185.445628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07459 -38.36472 -35.26890 -34.35512 -33.32588 -32.12604 -29.97016 -29.24678 -28.10592 -28.05429 -26.08027 -24.09819 -22.29091 -21.64251 -19.83019 -19.54048 -17.66665 -17.00155 -15.69432 -15.56828 -15.12927 -15.02435 -14.87100 -14.48639 -13.99249 -13.56546 -13.50264 -13.16849 -12.66141 -12.60722 -12.52848 -12.31144 -12.19108 -12.00269 -11.55014 -11.23212 -11.20407 -11.02595 -10.77410 -10.72554 -10.45047 -10.33445 -10.22262 -9.82179 -9.27563 -9.20013 -9.05600 -8.58718 -8.06781 -7.67367 -6.20124 -4.28780 0.99815 1.13496 3.23837 3.28953 3.31502 3.71397 3.91943 4.06767 4.29678 4.41529 4.79447 4.99291 5.07488 5.13874 5.25249 5.33535 5.34218 5.46723 5.49778 5.57598 5.67517 5.76778 5.82916 5.92426 5.95143 6.02881 6.17652 6.21810 6.49732 6.56315 6.67628 6.88380 7.09725 7.16237 7.42565 7.50576 7.61071 7.68649 7.82885 8.16468 8.22570 8.73109 9.39756 9.52389 10.86773 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.003981 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.460666 B = 7031.926833 C = 7377.125233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.171 3.829 3 C -0.218 4.218 4 C 0.203 3.797 5 C 0.093 3.907 6 N -0.521 5.521 7 C 0.042 3.958 8 C -0.143 4.143 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.538 4.538 12 H 0.060 0.940 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.060 3.940 20 N -0.515 5.515 21 C 0.318 3.682 22 C -0.083 4.083 23 N -0.529 5.529 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.377 0.623 35 H 0.267 0.733 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 -8.728 -8.484 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 C -0.240 4.240 4 C 0.056 3.944 5 C -0.036 4.036 6 N -0.246 5.246 7 C -0.085 4.085 8 C -0.182 4.182 9 C 0.212 3.788 10 O -0.387 6.387 11 C -0.576 4.576 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.067 4.067 20 N -0.231 5.231 21 C 0.050 3.950 22 C -0.141 4.141 23 N -0.246 5.246 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.226 0.774 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.405 -9.555 -8.408 17.089 hybrid contribution 1.609 1.410 -0.237 2.152 sum -9.796 -8.145 -8.645 15.396 Atomic orbital electron populations 1.20745 0.88024 1.03970 1.03330 1.21681 0.97394 0.88205 0.90177 1.22537 0.95689 1.00379 1.05428 1.21666 0.91442 0.93531 0.87720 1.21191 0.98127 0.91416 0.92853 1.63635 1.41738 1.03843 1.15402 1.22890 0.92219 0.94640 0.98776 1.23248 0.95252 0.98197 1.01484 1.19516 0.87461 0.90942 0.80884 1.86135 1.41083 1.94889 1.16604 1.21497 1.04645 1.14379 1.17107 0.92145 1.24991 0.97809 0.95578 0.94630 1.69729 1.30009 1.34451 1.19115 0.86539 0.80823 0.81992 0.77947 1.20047 1.21152 1.20184 1.23021 0.97105 0.88192 0.98388 1.68104 1.41745 0.98339 1.14950 1.23180 0.86588 0.94699 0.90511 1.20526 1.00013 0.90033 1.03535 1.68047 1.09768 1.30480 1.16301 0.89980 0.90144 0.90099 0.83673 0.92602 0.89329 0.92394 0.92717 0.90542 0.92613 0.77402 0.92319 0.93250 0.90905 0.89940 0.89567 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.22 36.01 0.37 -0.53 16 2 C 0.17 2.22 6.82 -82.24 -0.56 1.65 16 3 C -0.22 -2.96 9.52 -39.32 -0.37 -3.33 16 4 C 0.20 3.20 5.97 -82.25 -0.49 2.71 16 5 C 0.09 1.51 4.92 -4.98 -0.02 1.49 16 6 N -0.52 -10.32 5.15 -232.69 -1.20 -11.52 16 7 C 0.04 0.88 6.31 -2.84 -0.02 0.86 16 8 C -0.14 -3.37 5.37 -24.91 -0.13 -3.51 16 9 C 0.25 6.31 0.87 -89.64 -0.08 6.23 16 10 O -0.58 -15.33 13.16 -35.23 -0.46 -15.80 16 11 C -0.54 -14.40 8.27 -34.44 -0.28 -14.68 16 12 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 13 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 14 N -0.89 -23.99 10.75 55.43 0.60 -23.39 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.06 1.29 5.86 -2.30 -0.01 1.27 16 20 N -0.52 -8.44 9.13 -6.99 -0.06 -8.51 16 21 C 0.32 4.68 7.64 -157.20 -1.20 3.47 16 22 C -0.08 -0.90 10.32 36.00 0.37 -0.53 16 23 N -0.53 -7.61 10.27 -6.99 -0.07 -7.68 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 29 H 0.09 1.23 7.99 -51.93 -0.42 0.81 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.09 6.48 -51.93 -0.34 0.76 16 32 H 0.08 1.93 7.54 -51.93 -0.39 1.53 16 33 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 34 H 0.38 10.05 7.56 45.56 0.34 10.39 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.05 1.01 7.70 -51.92 -0.40 0.61 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -29.84 329.21 -9.17 -39.01 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.38 Total: 10.38 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.54 Total: -3.06 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.74 Total: -51.10 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.46 Total: -15.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.84 -9.17 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595561248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.244 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds