Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38619 * 120.45092 * 2 1 4 4 C 1.38574 * 118.40081 * 180.25849 * 3 2 1 5 5 C 1.50693 * 120.45007 * 179.72235 * 4 3 2 6 6 N 1.46903 * 109.47266 * 94.99684 * 5 4 3 7 7 C 1.47439 * 110.99892 * 69.87331 * 6 5 4 8 8 C 1.54324 * 107.23088 * 123.26298 * 7 6 5 9 9 C 1.55134 * 103.02139 * 22.28288 * 8 7 6 10 10 O 1.42896 * 110.99275 * 82.47618 * 9 8 7 11 11 C 1.50700 * 110.99176 * 206.25607 * 9 8 7 12 12 H 1.07999 * 119.99968 * 118.54632 * 11 9 8 13 13 C 1.37874 * 119.99967 * 298.54611 * 11 9 8 14 14 N 1.31508 * 120.00179 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99835 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47321 * 59.99654 * 15 13 11 17 17 H 1.48499 * 109.47104 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47063 * 300.00169 * 15 13 11 19 19 C 1.47839 * 111.00443 * 190.72131 * 6 5 4 20 20 N 1.32353 * 119.10120 * 359.44005 * 4 3 2 21 21 C 1.31778 * 120.82199 * 0.57366 * 20 4 3 22 22 C 1.50696 * 119.12326 * 179.68585 * 21 20 4 23 23 N 1.31807 * 121.75360 * 359.69978 * 21 20 4 24 24 H 1.09001 * 109.47078 * 89.99834 * 1 2 3 25 25 H 1.08998 * 109.47004 * 210.00031 * 1 2 3 26 26 H 1.09000 * 109.46685 * 329.99727 * 1 2 3 27 27 H 1.08002 * 120.79619 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47763 * 214.99921 * 5 4 3 29 29 H 1.08999 * 109.47028 * 335.00241 * 5 4 3 30 30 H 1.09003 * 109.88917 * 242.66313 * 7 6 5 31 31 H 1.08993 * 109.89196 * 3.85555 * 7 6 5 32 32 H 1.09002 * 110.70480 * 140.66997 * 8 7 6 33 33 H 1.09004 * 110.70393 * 263.72436 * 8 7 6 34 34 H 0.96703 * 113.99944 * 61.44826 * 10 9 8 35 35 H 0.97000 * 120.00109 * 180.02562 * 14 13 11 36 36 H 1.09008 * 110.37051 * 332.46366 * 19 6 5 37 37 H 1.09003 * 110.37727 * 94.80170 * 19 6 5 38 38 H 1.08999 * 109.46887 * 270.02108 * 22 21 20 39 39 H 1.09003 * 109.47534 * 30.01774 * 22 21 20 40 40 H 1.08997 * 109.47627 * 150.02271 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 -0.0055 5 6 4.4040 2.4163 -0.0120 6 7 4.7745 2.7681 1.3653 7 6 5.7655 1.8189 1.9047 8 6 6.9950 2.6419 2.3435 9 6 6.4080 4.0624 2.5534 10 8 5.8006 4.1802 3.8415 11 6 7.4662 5.1178 2.3603 12 1 7.3572 5.8552 1.5788 13 6 8.5736 5.1420 3.1813 14 7 8.7061 4.2445 4.1333 15 14 9.8850 6.4507 2.9424 16 1 9.2798 7.7956 3.1164 17 1 10.9638 6.2593 3.9447 18 1 10.4542 6.3373 1.5755 19 6 5.3444 4.1307 1.4292 20 7 4.1963 -0.0333 0.0008 21 6 3.4956 -1.1493 0.0008 22 6 4.2205 -2.4705 0.0008 23 7 2.1776 -1.1408 0.0004 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6900 2.1418 -0.0004 28 1 5.3069 2.2691 -0.6047 29 1 3.8119 3.2221 -0.4460 30 1 5.3463 1.2926 2.7623 31 1 6.0533 1.1049 1.1331 32 1 7.4063 2.2532 3.2752 33 1 7.7542 2.6474 1.5614 34 1 6.4124 4.0475 4.5785 35 1 9.4850 4.2618 4.7112 36 1 5.8121 4.3913 0.4797 37 1 4.5699 4.8545 1.6830 38 1 4.3956 -2.7888 -1.0269 39 1 5.1754 -2.3611 0.5149 40 1 3.6149 -3.2173 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595561248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -24.052318 kcal Electronic energy + Delta-G solvation = -21658.148979 eV Core-core repulsion = 18471.780401 eV Total energy + Delta-G solvation = -3186.368577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14128 -40.08288 -36.91654 -35.40436 -34.63013 -34.18248 -31.55987 -30.08312 -29.92021 -29.16278 -27.58610 -25.86226 -23.37994 -22.82053 -21.43424 -21.41374 -19.07724 -18.66965 -17.10474 -16.89611 -16.74612 -16.53231 -16.12215 -15.94612 -15.75700 -14.88879 -14.40450 -14.32904 -14.21837 -13.87775 -13.83177 -13.46846 -13.26876 -13.13718 -13.11148 -13.01587 -12.80940 -12.76342 -12.54004 -12.28385 -12.20141 -11.85327 -11.66479 -11.38805 -11.10549 -10.61374 -10.26685 -10.19167 -10.08307 -9.27524 -8.21234 -6.37685 -0.05870 0.06788 1.42166 1.43126 1.50773 2.38021 2.61060 2.95363 3.03162 3.04788 3.27885 3.42510 3.95938 3.99863 4.08420 4.09977 4.14648 4.39696 4.44069 4.46354 4.55962 4.57639 4.67947 4.71813 4.74232 4.76523 4.90193 4.96445 5.03335 5.06597 5.16037 5.24104 5.45599 5.52607 5.54946 5.77605 5.88620 6.11825 6.13288 6.20174 6.68307 7.15714 7.33789 7.43265 8.84003 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.003981 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.460666 B = 7031.926833 C = 7377.125233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.167 3.833 3 C -0.219 4.219 4 C 0.180 3.820 5 C 0.096 3.904 6 N -0.524 5.524 7 C 0.059 3.941 8 C -0.133 4.133 9 C 0.234 3.766 10 O -0.588 6.588 11 C -0.562 4.562 12 H 0.059 0.941 13 C 0.030 3.970 14 N -0.912 5.912 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.069 3.931 20 N -0.543 5.543 21 C 0.302 3.698 22 C -0.080 4.080 23 N -0.540 5.540 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.170 0.830 28 H 0.051 0.949 29 H 0.116 0.884 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.371 0.629 35 H 0.268 0.732 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -8.611 -9.634 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.020 3.980 3 C -0.241 4.241 4 C 0.034 3.966 5 C -0.033 4.033 6 N -0.249 5.249 7 C -0.068 4.068 8 C -0.172 4.172 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.601 4.601 12 H 0.077 0.923 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.786 3.214 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.058 4.058 20 N -0.260 5.260 21 C 0.035 3.965 22 C -0.138 4.138 23 N -0.257 5.257 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.187 0.813 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.219 0.781 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.633 -9.442 -9.571 18.448 hybrid contribution 1.928 1.333 0.114 2.347 sum -10.704 -8.109 -9.457 16.425 Atomic orbital electron populations 1.20870 0.84940 1.04991 1.04852 1.22400 0.99371 0.87616 0.88565 1.22811 0.94859 1.01815 1.04655 1.21679 0.92480 0.93144 0.89247 1.21253 0.98530 0.92927 0.90547 1.63543 1.40604 1.02622 1.18120 1.22643 0.91159 0.94468 0.98562 1.23052 0.95958 0.98258 0.99951 1.19786 0.88625 0.91088 0.81053 1.86128 1.41238 1.94989 1.17159 1.21800 1.05659 1.15092 1.17504 0.92272 1.25712 0.99621 0.97382 0.94350 1.69831 1.30414 1.35444 1.19445 0.85580 0.78348 0.79493 0.78000 1.19779 1.20793 1.19630 1.22882 0.96252 0.89284 0.97423 1.68081 1.42697 0.99048 1.16131 1.23799 0.87149 0.95387 0.90187 1.20618 0.99709 0.88768 1.04716 1.68164 1.09644 1.31232 1.16654 0.88002 0.89896 0.88288 0.81269 0.93123 0.86612 0.93701 0.91893 0.92826 0.93705 0.78071 0.92267 0.92260 0.90779 0.88302 0.89825 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.22 71.24 0.73 -0.69 16 2 C 0.17 3.94 6.82 42.58 0.29 4.23 16 3 C -0.22 -5.47 9.52 22.44 0.21 -5.26 16 4 C 0.18 5.46 5.97 42.56 0.25 5.71 16 5 C 0.10 2.97 4.92 85.55 0.42 3.40 16 6 N -0.52 -20.33 5.15 -890.11 -4.58 -24.91 16 7 C 0.06 2.50 6.31 86.65 0.55 3.05 16 8 C -0.13 -6.42 5.37 31.77 0.17 -6.25 16 9 C 0.23 11.82 0.87 -10.16 -0.01 11.81 16 10 O -0.59 -31.61 13.16 -148.98 -1.96 -33.57 16 11 C -0.56 -30.23 8.27 25.60 0.21 -30.01 16 12 H 0.06 3.11 7.79 -2.91 -0.02 3.09 16 13 C 0.03 1.60 5.29 84.66 0.45 2.04 16 14 N -0.91 -49.53 10.75 21.45 0.23 -49.30 16 15 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C 0.07 2.91 5.86 86.78 0.51 3.42 16 20 N -0.54 -17.44 9.13 -176.04 -1.61 -19.05 16 21 C 0.30 8.61 7.64 138.75 1.06 9.67 16 22 C -0.08 -1.66 10.32 71.23 0.74 -0.93 16 23 N -0.54 -14.71 10.27 -176.02 -1.81 -16.51 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 27 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 29 H 0.12 2.92 7.99 -2.39 -0.02 2.90 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 2.53 6.48 -2.39 -0.02 2.52 16 32 H 0.05 2.79 7.54 -2.39 -0.02 2.77 16 33 H 0.04 2.21 8.04 -2.38 -0.02 2.19 16 34 H 0.37 20.35 7.56 -74.06 -0.56 19.79 16 35 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.06 2.37 7.70 -2.38 -0.02 2.35 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.74 329.21 -1.64 -65.38 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.48 Total: 33.61 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.58 Total: 0.20 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -7.77 Total: -109.77 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.96 Total: -33.57 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -63.74 -1.64 -65.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595561248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.331 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds