Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35459 * 116.99986 * 2 1 4 4 N 1.32320 * 119.15739 * 359.97438 * 3 2 1 5 5 C 1.32507 * 120.95227 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.36437 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.26569 * 359.97438 * 5 4 3 8 8 C 1.39627 * 118.45616 * 0.02562 * 7 5 4 9 9 N 1.38528 * 120.49655 * 179.97438 * 8 7 5 10 10 C 1.46854 * 111.00081 * 304.20609 * 9 8 7 11 11 C 1.53039 * 109.52594 * 174.16369 * 10 9 8 12 12 C 1.53119 * 109.27784 * 59.17658 * 11 10 9 13 13 C 1.53113 * 109.16316 * 302.34705 * 12 11 10 14 14 H 1.09007 * 109.50548 * 297.71708 * 13 12 11 15 15 C 1.50695 * 109.53938 * 177.61634 * 13 12 11 16 16 H 1.08001 * 120.00312 * 245.61420 * 15 13 12 17 17 C 1.37885 * 119.99792 * 65.60565 * 15 13 12 18 18 N 1.31513 * 120.00084 * 9.56357 * 17 15 13 19 19 Si 1.86798 * 119.99894 * 189.56364 * 17 15 13 20 20 H 1.48494 * 109.47464 * 94.98833 * 19 17 15 21 21 H 1.48501 * 109.47127 * 214.99287 * 19 17 15 22 22 H 1.48509 * 109.47231 * 334.98926 * 19 17 15 23 23 C 1.46847 * 111.00281 * 179.97438 * 9 8 7 24 24 N 1.32263 * 119.15393 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47424 * 300.00583 * 1 2 3 27 27 H 1.09001 * 109.46762 * 60.00584 * 1 2 3 28 28 H 1.09001 * 109.47144 * 90.00183 * 6 5 4 29 29 H 1.09000 * 109.47035 * 209.99590 * 6 5 4 30 30 H 1.08994 * 109.47106 * 329.99640 * 6 5 4 31 31 H 1.08002 * 120.76825 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.46259 * 294.18039 * 10 9 8 33 33 H 1.08998 * 109.45927 * 54.14360 * 10 9 8 34 34 H 1.09002 * 109.49693 * 299.23677 * 11 10 9 35 35 H 1.08996 * 109.50135 * 179.12261 * 11 10 9 36 36 H 1.09000 * 109.51634 * 182.43848 * 12 11 10 37 37 H 1.09002 * 109.57099 * 62.28357 * 12 11 10 38 38 H 0.96995 * 119.99972 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.45985 * 305.84897 * 23 9 8 40 40 H 1.08999 * 109.46228 * 65.82225 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3070 2.3060 -0.0005 5 6 1.8713 3.5049 0.0000 6 6 1.0192 4.7479 0.0000 7 6 3.2490 3.6027 0.0016 8 6 3.9995 2.4253 0.0021 9 7 5.3840 2.4741 0.0031 10 6 5.8836 3.2630 -1.1303 11 6 7.4019 3.4173 -1.0163 12 6 8.0518 2.0309 -1.0093 13 6 7.4788 1.2130 0.1514 14 1 7.7243 1.6995 1.0955 15 6 8.0695 -0.1732 0.1311 16 1 7.4374 -1.0268 -0.0641 17 6 9.4172 -0.3517 0.3617 18 7 10.1513 0.6550 0.7829 19 14 10.2003 -2.0233 0.0759 20 1 10.7887 -2.0679 -1.2868 21 1 11.2676 -2.2488 1.0835 22 1 9.1671 -3.0824 0.2038 23 6 5.9583 1.1226 0.0041 24 7 3.3656 1.2567 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.8135 5.0473 1.0276 29 1 1.5481 5.5509 -0.5134 30 1 0.0800 4.5445 -0.5143 31 1 3.7344 4.5675 0.0016 32 1 5.6393 2.7542 -2.0627 33 1 5.4167 4.2479 -1.1211 34 1 7.6462 3.9384 -0.0906 35 1 7.7743 3.9896 -1.8659 36 1 9.1297 2.1346 -0.8847 37 1 7.8411 1.5241 -1.9510 38 1 11.0994 0.5295 0.9447 39 1 5.5457 0.5533 0.8371 40 1 5.7137 0.6234 -0.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = 17.646256 kcal Electronic energy + Delta-G solvation = -21761.422088 eV Core-core repulsion = 18576.861696 eV Total energy + Delta-G solvation = -3184.560391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19231 -38.98047 -37.74226 -34.65063 -33.43458 -32.04549 -30.45124 -30.08879 -28.45823 -27.31697 -25.04467 -24.15724 -23.19408 -21.56113 -21.20122 -18.93438 -18.22230 -17.44383 -16.56544 -16.31807 -15.83191 -15.07965 -14.68990 -14.49705 -14.42130 -13.95323 -13.82150 -13.39881 -13.07251 -12.73499 -12.60660 -12.55620 -12.32531 -12.02414 -11.89959 -11.16270 -11.05544 -10.89290 -10.80096 -10.70524 -10.45623 -10.24522 -9.99782 -9.53902 -9.23855 -9.06827 -8.97448 -8.77383 -8.31318 -8.00859 -6.01410 -4.02399 1.22739 1.27725 2.65698 3.32743 3.39992 3.44262 3.76956 4.00240 4.07210 4.47725 4.77237 5.04602 5.16494 5.20702 5.21447 5.28071 5.30997 5.38874 5.42801 5.50650 5.52239 5.65476 5.75443 5.80792 5.97054 6.15125 6.34493 6.40795 6.47076 6.61182 6.75660 6.89103 7.05028 7.21084 7.23235 7.45322 7.57639 7.72427 7.96538 8.03827 8.35262 8.45468 9.01417 9.60804 11.08072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.004702 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.358287 B = 5953.226323 C = 7019.380807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.291 6.291 3 C 0.524 3.476 4 N -0.600 5.600 5 C 0.216 3.784 6 C -0.101 4.101 7 C -0.288 4.288 8 C 0.405 3.595 9 N -0.467 5.467 10 C 0.069 3.931 11 C -0.119 4.119 12 C -0.110 4.110 13 C 0.049 3.951 14 H 0.042 0.958 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.075 3.925 24 N -0.560 5.560 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 8.193 -3.393 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.193 6.193 3 C 0.219 3.781 4 N -0.334 5.334 5 C 0.073 3.927 6 C -0.159 4.159 7 C -0.314 4.314 8 C 0.164 3.836 9 N -0.183 5.183 10 C -0.056 4.056 11 C -0.157 4.157 12 C -0.148 4.148 13 C 0.030 3.970 14 H 0.060 0.940 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.050 4.050 24 N -0.293 5.293 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.443 7.284 -2.927 18.221 hybrid contribution 0.527 -0.455 -0.593 0.915 sum -15.916 6.828 -3.520 17.673 Atomic orbital electron populations 1.22904 0.76239 1.03078 1.02541 1.86100 1.22896 1.23066 1.87191 1.20384 0.85559 0.84430 0.87703 1.67832 1.41132 0.98566 1.25897 1.21085 0.91327 0.92331 0.87941 1.20731 0.99319 0.92314 1.03498 1.21976 0.94577 0.99768 1.15055 1.20085 0.90842 0.87110 0.85566 1.58942 0.99828 1.19647 1.39835 1.22248 0.97819 0.96288 0.89242 1.21732 0.92029 1.00486 1.01458 1.21671 1.01898 0.91984 0.99233 1.18785 0.86813 0.95992 0.95392 0.93972 1.21068 0.93377 0.92258 1.48637 0.92490 1.24914 0.97431 0.96594 0.94630 1.69972 1.06737 1.31130 1.44700 0.86641 0.79152 0.84706 0.77913 1.20749 1.21318 1.19803 1.22395 0.97903 0.83319 1.01343 1.67567 1.07845 1.29444 1.24442 0.88250 0.92145 0.92177 0.89798 0.90114 0.90274 0.83555 0.93852 0.90885 0.91407 0.92331 0.90399 0.94404 0.93044 0.90529 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.36 101.05 1.05 1.57 16 2 O -0.29 -4.72 10.55 -18.07 -0.19 -4.91 16 3 C 0.52 9.23 8.49 -91.30 -0.77 8.45 16 4 N -0.60 -9.13 9.16 -11.03 -0.10 -9.24 16 5 C 0.22 2.87 6.81 -82.35 -0.56 2.31 16 6 C -0.10 -0.86 10.21 36.01 0.37 -0.49 16 7 C -0.29 -4.16 8.94 -39.11 -0.35 -4.51 16 8 C 0.41 7.35 6.41 -154.83 -0.99 6.36 16 9 N -0.47 -8.97 4.68 -173.07 -0.81 -9.78 16 10 C 0.07 1.14 5.25 -3.83 -0.02 1.12 16 11 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 12 C -0.11 -2.46 5.09 -26.61 -0.14 -2.60 16 13 C 0.05 1.22 2.12 -91.70 -0.19 1.03 16 14 H 0.04 1.17 8.09 -51.93 -0.42 0.75 16 15 C -0.51 -14.22 8.48 -34.44 -0.29 -14.52 16 16 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 17 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 18 N -0.89 -25.31 12.19 55.43 0.68 -24.63 16 19 Si 0.89 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.08 1.69 3.89 -3.84 -0.01 1.68 16 24 N -0.56 -11.05 8.87 -13.97 -0.12 -11.17 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.15 1.74 7.22 -52.49 -0.38 1.37 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.94 6.99 -51.93 -0.36 1.58 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.08 1.84 7.73 -51.93 -0.40 1.44 16 40 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -31.12 325.93 -8.93 -40.06 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.10 Total: -1.49 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.18 Total: -0.14 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.36 Total: -54.81 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.19 Total: -4.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.12 -8.93 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds