Wall clock time and date at job start Mon Mar 30 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35459 * 116.99986 * 2 1 4 4 N 1.32320 * 119.15739 * 359.97438 * 3 2 1 5 5 C 1.32507 * 120.95227 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.36437 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.26569 * 359.97438 * 5 4 3 8 8 C 1.39627 * 118.45616 * 0.02562 * 7 5 4 9 9 N 1.38528 * 120.49655 * 179.97438 * 8 7 5 10 10 C 1.46854 * 111.00081 * 304.20609 * 9 8 7 11 11 C 1.53039 * 109.52594 * 174.16369 * 10 9 8 12 12 C 1.53119 * 109.27784 * 59.17658 * 11 10 9 13 13 C 1.53113 * 109.16316 * 302.34705 * 12 11 10 14 14 H 1.09007 * 109.50548 * 297.71708 * 13 12 11 15 15 C 1.50695 * 109.53938 * 177.61634 * 13 12 11 16 16 H 1.08001 * 120.00312 * 245.61420 * 15 13 12 17 17 C 1.37885 * 119.99792 * 65.60565 * 15 13 12 18 18 N 1.31513 * 120.00084 * 9.56357 * 17 15 13 19 19 Si 1.86798 * 119.99894 * 189.56364 * 17 15 13 20 20 H 1.48494 * 109.47464 * 94.98833 * 19 17 15 21 21 H 1.48501 * 109.47127 * 214.99287 * 19 17 15 22 22 H 1.48509 * 109.47231 * 334.98926 * 19 17 15 23 23 C 1.46847 * 111.00281 * 179.97438 * 9 8 7 24 24 N 1.32263 * 119.15393 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47424 * 300.00583 * 1 2 3 27 27 H 1.09001 * 109.46762 * 60.00584 * 1 2 3 28 28 H 1.09001 * 109.47144 * 90.00183 * 6 5 4 29 29 H 1.09000 * 109.47035 * 209.99590 * 6 5 4 30 30 H 1.08994 * 109.47106 * 329.99640 * 6 5 4 31 31 H 1.08002 * 120.76825 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.46259 * 294.18039 * 10 9 8 33 33 H 1.08998 * 109.45927 * 54.14360 * 10 9 8 34 34 H 1.09002 * 109.49693 * 299.23677 * 11 10 9 35 35 H 1.08996 * 109.50135 * 179.12261 * 11 10 9 36 36 H 1.09000 * 109.51634 * 182.43848 * 12 11 10 37 37 H 1.09002 * 109.57099 * 62.28357 * 12 11 10 38 38 H 0.96995 * 119.99972 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.45985 * 305.84897 * 23 9 8 40 40 H 1.08999 * 109.46228 * 65.82225 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3070 2.3060 -0.0005 5 6 1.8713 3.5049 0.0000 6 6 1.0192 4.7479 0.0000 7 6 3.2490 3.6027 0.0016 8 6 3.9995 2.4253 0.0021 9 7 5.3840 2.4741 0.0031 10 6 5.8836 3.2630 -1.1303 11 6 7.4019 3.4173 -1.0163 12 6 8.0518 2.0309 -1.0093 13 6 7.4788 1.2130 0.1514 14 1 7.7243 1.6995 1.0955 15 6 8.0695 -0.1732 0.1311 16 1 7.4374 -1.0268 -0.0641 17 6 9.4172 -0.3517 0.3617 18 7 10.1513 0.6550 0.7829 19 14 10.2003 -2.0233 0.0759 20 1 10.7887 -2.0679 -1.2868 21 1 11.2676 -2.2488 1.0835 22 1 9.1671 -3.0824 0.2038 23 6 5.9583 1.1226 0.0041 24 7 3.3656 1.2567 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.8135 5.0473 1.0276 29 1 1.5481 5.5509 -0.5134 30 1 0.0800 4.5445 -0.5143 31 1 3.7344 4.5675 0.0016 32 1 5.6393 2.7542 -2.0627 33 1 5.4167 4.2479 -1.1211 34 1 7.6462 3.9384 -0.0906 35 1 7.7743 3.9896 -1.8659 36 1 9.1297 2.1346 -0.8847 37 1 7.8411 1.5241 -1.9510 38 1 11.0994 0.5295 0.9447 39 1 5.5457 0.5533 0.8371 40 1 5.7137 0.6234 -0.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:57 Heat of formation + Delta-G solvation = -4.466109 kcal Electronic energy + Delta-G solvation = -21762.380952 eV Core-core repulsion = 18576.861696 eV Total energy + Delta-G solvation = -3185.519256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43168 -40.35247 -39.02163 -36.17398 -34.97087 -33.65501 -31.95057 -31.62925 -29.46636 -28.31505 -26.94226 -25.67870 -24.45792 -23.07797 -22.61656 -20.60948 -19.48198 -18.73863 -18.40614 -17.49973 -17.32971 -16.54414 -16.22713 -15.86248 -15.64837 -15.33857 -15.15042 -14.71602 -14.51087 -14.22941 -14.07507 -13.75649 -13.52935 -13.14149 -12.90117 -12.83715 -12.76228 -12.61430 -12.27358 -12.09269 -11.90678 -11.83108 -11.69538 -11.40461 -11.01341 -10.78985 -10.45119 -10.29834 -10.24674 -9.37930 -8.15586 -6.23773 0.00996 0.10296 1.39336 1.40442 1.51223 1.55215 2.37977 2.52010 2.76209 3.02043 3.14729 3.66322 3.81661 4.05363 4.09237 4.26153 4.29826 4.35132 4.39048 4.42944 4.50109 4.58192 4.68379 4.76829 4.81143 4.82823 4.85264 4.93672 5.00607 5.06544 5.21556 5.31371 5.38063 5.56606 5.61350 5.81549 5.98003 6.00021 6.12471 6.25205 6.36917 6.85517 7.14078 7.42475 8.93371 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.004702 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.358287 B = 5953.226323 C = 7019.380807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.317 6.317 3 C 0.508 3.492 4 N -0.593 5.593 5 C 0.217 3.783 6 C -0.096 4.096 7 C -0.278 4.278 8 C 0.379 3.621 9 N -0.476 5.476 10 C 0.070 3.930 11 C -0.109 4.109 12 C -0.103 4.103 13 C 0.050 3.950 14 H 0.006 0.994 15 C -0.540 4.540 16 H 0.044 0.956 17 C 0.023 3.977 18 N -0.912 5.912 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.273 1.273 23 C 0.101 3.899 24 N -0.606 5.606 25 H 0.127 0.873 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.179 0.821 32 H 0.041 0.959 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.187 10.188 -4.258 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.219 6.219 3 C 0.204 3.796 4 N -0.327 5.327 5 C 0.074 3.926 6 C -0.153 4.153 7 C -0.303 4.303 8 C 0.140 3.860 9 N -0.191 5.191 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.141 4.141 13 C 0.031 3.969 14 H 0.024 0.976 15 C -0.579 4.579 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.026 4.026 24 N -0.340 5.340 25 H 0.145 0.855 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.197 0.803 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.170 9.290 -3.798 20.757 hybrid contribution 0.916 -1.067 -0.296 1.438 sum -17.253 8.223 -4.094 19.546 Atomic orbital electron populations 1.23219 0.73661 1.05145 1.03041 1.86069 1.25529 1.23148 1.87106 1.20566 0.85273 0.85480 0.88278 1.67993 1.40598 0.98735 1.25414 1.21999 0.91730 0.93218 0.85636 1.20905 0.99047 0.90310 1.05035 1.22284 0.94892 0.99510 1.13642 1.20296 0.90296 0.88223 0.87196 1.58979 1.01026 1.17530 1.41606 1.22381 0.96830 0.97966 0.88276 1.21638 0.92891 0.97410 1.02774 1.21471 1.00284 0.94752 0.97592 1.18671 0.88644 0.94858 0.94685 0.97594 1.21386 0.93980 0.93339 1.49163 0.93738 1.25622 0.97748 1.00114 0.94213 1.70073 1.06986 1.32900 1.45122 0.85675 0.78165 0.80426 0.78209 1.19747 1.20609 1.19815 1.21811 0.96102 0.85470 0.99209 1.67401 1.09530 1.31119 1.26000 0.85503 0.91678 0.91484 0.88100 0.87336 0.89411 0.80333 0.94079 0.86440 0.91840 0.88864 0.93313 0.94859 0.92820 0.93363 0.95575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 10.36 113.37 1.17 2.07 16 2 O -0.32 -10.38 10.55 -87.57 -0.92 -11.30 16 3 C 0.51 17.94 8.49 180.58 1.53 19.47 16 4 N -0.59 -17.05 9.16 -301.76 -2.76 -19.82 16 5 C 0.22 5.10 6.81 42.43 0.29 5.39 16 6 C -0.10 -1.17 10.21 71.24 0.73 -0.44 16 7 C -0.28 -7.25 8.94 22.58 0.20 -7.05 16 8 C 0.38 13.58 6.41 133.18 0.85 14.44 16 9 N -0.48 -18.29 4.68 -701.47 -3.28 -21.58 16 10 C 0.07 2.18 5.25 86.33 0.45 2.63 16 11 C -0.11 -3.76 6.09 30.65 0.19 -3.57 16 12 C -0.10 -4.74 5.09 30.67 0.16 -4.58 16 13 C 0.05 2.64 2.12 -11.49 -0.02 2.62 16 14 H 0.01 0.35 8.09 -2.38 -0.02 0.33 16 15 C -0.54 -31.29 8.48 25.60 0.22 -31.07 16 16 H 0.04 2.61 7.77 -2.91 -0.02 2.59 16 17 C 0.02 1.29 5.22 84.66 0.44 1.73 16 18 N -0.91 -53.53 12.19 21.45 0.26 -53.26 16 19 Si 0.95 44.87 29.55 68.60 2.03 46.89 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 23 C 0.10 4.75 3.89 86.32 0.34 5.09 16 24 N -0.61 -24.50 8.87 -311.08 -2.76 -27.26 16 25 H 0.13 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 0.79 8.09 -2.39 -0.02 0.77 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.18 3.38 7.22 -2.91 -0.02 3.36 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.12 2.64 6.74 -2.39 -0.02 2.63 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.50 6.99 -2.39 -0.02 2.49 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.05 2.49 7.73 -2.39 -0.02 2.47 16 40 H 0.03 1.28 8.12 -2.39 -0.02 1.26 16 Total: -1.00 -72.24 325.93 0.13 -72.11 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.02 Total: 7.49 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.55 Total: 6.72 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -8.54 Total: -121.92 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.92 Total: -11.30 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.24 0.13 -72.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.644 kcal (2) G-P(sol) polarization free energy of solvation -72.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds