Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 117.00088 * 2 1 4 4 N 1.32316 * 119.15477 * 359.97438 * 3 2 1 5 5 C 1.32508 * 120.95210 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.36902 * 179.97438 * 5 4 3 7 7 C 1.38124 * 119.26749 * 359.97438 * 5 4 3 8 8 C 1.39623 * 118.45165 * 0.28131 * 7 5 4 9 9 N 1.38537 * 120.49904 * 179.69987 * 8 7 5 10 10 C 1.46847 * 110.99312 * 56.04587 * 9 8 7 11 11 C 1.53043 * 109.52087 * 185.84326 * 10 9 8 12 12 C 1.53120 * 109.27553 * 300.81720 * 11 10 9 13 13 C 1.53126 * 109.16125 * 57.65699 * 12 11 10 14 14 H 1.08996 * 109.50350 * 62.31955 * 13 12 11 15 15 C 1.50699 * 109.50517 * 182.40374 * 13 12 11 16 16 H 1.07998 * 119.99664 * 120.00048 * 15 13 12 17 17 C 1.37874 * 119.99923 * 299.99943 * 15 13 12 18 18 N 1.31513 * 119.99865 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99951 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47154 * 59.99911 * 19 17 15 21 21 H 1.48508 * 109.47194 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47268 * 300.00180 * 19 17 15 23 23 C 1.46845 * 111.00192 * 180.25191 * 9 8 7 24 24 N 1.32265 * 119.15531 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46616 * 60.00514 * 1 2 3 26 26 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47120 * 300.00200 * 1 2 3 28 28 H 1.08999 * 109.47230 * 270.02348 * 6 5 4 29 29 H 1.08998 * 109.46996 * 30.02287 * 6 5 4 30 30 H 1.09003 * 109.47137 * 150.02021 * 6 5 4 31 31 H 1.08002 * 120.77135 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.46753 * 305.85281 * 10 9 8 33 33 H 1.09000 * 109.46878 * 65.83566 * 10 9 8 34 34 H 1.08997 * 109.50830 * 60.75813 * 11 10 9 35 35 H 1.08996 * 109.50345 * 180.88344 * 11 10 9 36 36 H 1.08996 * 109.52405 * 177.55440 * 12 11 10 37 37 H 1.09002 * 109.52833 * 297.68871 * 12 11 10 38 38 H 0.97003 * 119.99808 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.46732 * 294.17897 * 23 9 8 40 40 H 1.09002 * 109.45993 * 54.14847 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3070 2.3059 -0.0005 5 6 1.8713 3.5048 -0.0010 6 6 1.0193 4.7479 -0.0022 7 6 3.2491 3.6027 -0.0005 8 6 3.9996 2.4253 -0.0055 9 7 5.3841 2.4741 -0.0114 10 6 5.8878 3.2563 1.1248 11 6 7.4057 3.4113 1.0060 12 6 8.0556 2.0250 0.9885 13 6 7.4783 1.2139 -0.1749 14 1 7.7208 1.7055 -1.1169 15 6 8.0692 -0.1724 -0.1639 16 1 7.4250 -1.0331 -0.0616 17 6 9.4321 -0.3417 -0.2845 18 7 10.2166 0.7065 -0.4086 19 14 10.1647 -2.0600 -0.2702 20 1 9.6042 -2.8465 -1.3984 21 1 11.6400 -1.9704 -0.4147 22 1 9.8322 -2.7293 1.0130 23 6 5.9583 1.1226 -0.0218 24 7 3.3657 1.2566 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.8140 5.0467 -1.0301 29 1 0.0798 4.5448 0.5117 30 1 1.5479 5.5512 0.5110 31 1 3.7345 4.5675 -0.0005 32 1 5.4210 4.2413 1.1232 33 1 5.6471 2.7419 2.0552 34 1 7.6467 3.9378 0.0826 35 1 7.7813 3.9785 1.8577 36 1 9.1330 2.1293 0.8604 37 1 7.8484 1.5135 1.9285 38 1 11.1755 0.5874 -0.4938 39 1 5.7171 0.6182 0.9138 40 1 5.5425 0.5579 -0.8563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = 18.896518 kcal Electronic energy + Delta-G solvation = -21773.427077 eV Core-core repulsion = 18588.920901 eV Total energy + Delta-G solvation = -3184.506176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18897 -38.97125 -37.73455 -34.65339 -33.44903 -32.00586 -30.43332 -30.06273 -28.44505 -27.31634 -25.06092 -24.10882 -23.19156 -21.54178 -21.18697 -18.90102 -18.21711 -17.43833 -16.56622 -16.31705 -15.80937 -15.06879 -14.69120 -14.49151 -14.44026 -13.94411 -13.79421 -13.39225 -13.06507 -12.72180 -12.61797 -12.51085 -12.33008 -12.01745 -11.86963 -11.15017 -10.98974 -10.93079 -10.76021 -10.69120 -10.44663 -10.21286 -9.91210 -9.54604 -9.24228 -9.07567 -8.99308 -8.72446 -8.31478 -8.00330 -5.98224 -4.03734 1.22824 1.27874 2.65805 3.34958 3.38732 3.42462 3.77642 4.00415 4.07488 4.47199 4.77659 5.04946 5.16472 5.21165 5.21593 5.28429 5.32277 5.39096 5.44161 5.52240 5.54579 5.66109 5.76259 5.83620 5.99475 6.16417 6.37636 6.43626 6.51874 6.66171 6.76490 6.91308 7.07364 7.24667 7.31018 7.46260 7.60275 7.75114 8.01046 8.11736 8.35818 8.45976 8.99441 9.60707 11.08164 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.004715 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.216893 B = 5937.625852 C = 7036.250541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.292 6.292 3 C 0.524 3.476 4 N -0.600 5.600 5 C 0.215 3.785 6 C -0.101 4.101 7 C -0.287 4.287 8 C 0.405 3.595 9 N -0.467 5.467 10 C 0.069 3.931 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.051 3.949 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.075 3.925 24 N -0.560 5.560 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.260 0.740 39 H 0.042 0.958 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.451 8.020 2.672 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.193 6.193 3 C 0.219 3.781 4 N -0.334 5.334 5 C 0.073 3.927 6 C -0.159 4.159 7 C -0.313 4.313 8 C 0.164 3.836 9 N -0.182 5.182 10 C -0.056 4.056 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.032 3.968 14 H 0.053 0.947 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.050 4.050 24 N -0.293 5.293 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.396 7.116 2.245 18.014 hybrid contribution 0.438 -0.492 0.451 0.798 sum -15.958 6.624 2.695 17.487 Atomic orbital electron populations 1.22902 0.76242 1.03075 1.02541 1.86099 1.22895 1.23073 1.87196 1.20385 0.85568 0.84430 0.87717 1.67830 1.41134 0.98567 1.25887 1.21089 0.91328 0.92330 0.87949 1.20731 0.99320 0.92315 1.03492 1.21979 0.94569 0.99775 1.15007 1.20099 0.90897 0.87103 0.85529 1.58962 0.99720 1.19847 1.39716 1.22266 0.97971 0.96263 0.89141 1.21752 0.91856 1.00814 1.01296 1.21733 1.03428 0.91471 0.98679 1.18769 0.86782 0.95928 0.95288 0.94714 1.21061 0.92014 0.91925 1.50147 0.92570 1.24913 0.97125 0.96713 0.94996 1.69868 1.04215 1.28748 1.50070 0.86651 0.77818 0.84839 0.78652 1.20245 1.21336 1.20302 1.22394 0.97943 0.83347 1.01330 1.67579 1.07843 1.29467 1.24422 0.92149 0.88253 0.92174 0.89801 0.90276 0.90108 0.83553 0.90981 0.93884 0.91578 0.92393 0.88578 0.94691 0.92977 0.93938 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.36 101.05 1.05 1.57 16 2 O -0.29 -4.73 10.55 -18.06 -0.19 -4.92 16 3 C 0.52 9.24 8.49 -91.30 -0.77 8.47 16 4 N -0.60 -9.15 9.16 -11.03 -0.10 -9.26 16 5 C 0.22 2.88 6.81 -82.34 -0.56 2.32 16 6 C -0.10 -0.86 10.21 36.01 0.37 -0.49 16 7 C -0.29 -4.18 8.94 -39.11 -0.35 -4.53 16 8 C 0.40 7.38 6.40 -154.81 -0.99 6.39 16 9 N -0.47 -9.02 4.68 -173.06 -0.81 -9.83 16 10 C 0.07 1.15 5.25 -3.83 -0.02 1.13 16 11 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 12 C -0.12 -2.64 5.02 -26.60 -0.13 -2.77 16 13 C 0.05 1.28 2.27 -91.69 -0.21 1.07 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.13 11.35 55.43 0.63 -24.50 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.07 1.69 3.89 -3.83 -0.01 1.67 16 24 N -0.56 -11.07 8.87 -13.97 -0.12 -11.20 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.15 1.76 7.23 -52.49 -0.38 1.38 16 32 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 2.46 6.15 -51.93 -0.32 2.14 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 40 H 0.07 1.79 7.73 -51.93 -0.40 1.39 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -30.85 324.52 -8.97 -39.83 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.06 Total: -1.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.19 Total: -0.30 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.41 Total: -54.78 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.19 Total: -4.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.85 -8.97 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.725 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds