Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 117.00088 * 2 1 4 4 N 1.32316 * 119.15477 * 359.97438 * 3 2 1 5 5 C 1.32508 * 120.95210 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.36902 * 179.97438 * 5 4 3 7 7 C 1.38124 * 119.26749 * 359.97438 * 5 4 3 8 8 C 1.39623 * 118.45165 * 0.28131 * 7 5 4 9 9 N 1.38537 * 120.49904 * 179.69987 * 8 7 5 10 10 C 1.46847 * 110.99312 * 56.04587 * 9 8 7 11 11 C 1.53043 * 109.52087 * 185.84326 * 10 9 8 12 12 C 1.53120 * 109.27553 * 300.81720 * 11 10 9 13 13 C 1.53126 * 109.16125 * 57.65699 * 12 11 10 14 14 H 1.08996 * 109.50350 * 62.31955 * 13 12 11 15 15 C 1.50699 * 109.50517 * 182.40374 * 13 12 11 16 16 H 1.07998 * 119.99664 * 120.00048 * 15 13 12 17 17 C 1.37874 * 119.99923 * 299.99943 * 15 13 12 18 18 N 1.31513 * 119.99865 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99951 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47154 * 59.99911 * 19 17 15 21 21 H 1.48508 * 109.47194 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47268 * 300.00180 * 19 17 15 23 23 C 1.46845 * 111.00192 * 180.25191 * 9 8 7 24 24 N 1.32265 * 119.15531 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46616 * 60.00514 * 1 2 3 26 26 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47120 * 300.00200 * 1 2 3 28 28 H 1.08999 * 109.47230 * 270.02348 * 6 5 4 29 29 H 1.08998 * 109.46996 * 30.02287 * 6 5 4 30 30 H 1.09003 * 109.47137 * 150.02021 * 6 5 4 31 31 H 1.08002 * 120.77135 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.46753 * 305.85281 * 10 9 8 33 33 H 1.09000 * 109.46878 * 65.83566 * 10 9 8 34 34 H 1.08997 * 109.50830 * 60.75813 * 11 10 9 35 35 H 1.08996 * 109.50345 * 180.88344 * 11 10 9 36 36 H 1.08996 * 109.52405 * 177.55440 * 12 11 10 37 37 H 1.09002 * 109.52833 * 297.68871 * 12 11 10 38 38 H 0.97003 * 119.99808 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.46732 * 294.17897 * 23 9 8 40 40 H 1.09002 * 109.45993 * 54.14847 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3070 2.3059 -0.0005 5 6 1.8713 3.5048 -0.0010 6 6 1.0193 4.7479 -0.0022 7 6 3.2491 3.6027 -0.0005 8 6 3.9996 2.4253 -0.0055 9 7 5.3841 2.4741 -0.0114 10 6 5.8878 3.2563 1.1248 11 6 7.4057 3.4113 1.0060 12 6 8.0556 2.0250 0.9885 13 6 7.4783 1.2139 -0.1749 14 1 7.7208 1.7055 -1.1169 15 6 8.0692 -0.1724 -0.1639 16 1 7.4250 -1.0331 -0.0616 17 6 9.4321 -0.3417 -0.2845 18 7 10.2166 0.7065 -0.4086 19 14 10.1647 -2.0600 -0.2702 20 1 9.6042 -2.8465 -1.3984 21 1 11.6400 -1.9704 -0.4147 22 1 9.8322 -2.7293 1.0130 23 6 5.9583 1.1226 -0.0218 24 7 3.3657 1.2566 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.8140 5.0467 -1.0301 29 1 0.0798 4.5448 0.5117 30 1 1.5479 5.5512 0.5110 31 1 3.7345 4.5675 -0.0005 32 1 5.4210 4.2413 1.1232 33 1 5.6471 2.7419 2.0552 34 1 7.6467 3.9378 0.0826 35 1 7.7813 3.9785 1.8577 36 1 9.1330 2.1293 0.8604 37 1 7.8484 1.5135 1.9285 38 1 11.1755 0.5874 -0.4938 39 1 5.7171 0.6182 0.9138 40 1 5.5425 0.5579 -0.8563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -2.890047 kcal Electronic energy + Delta-G solvation = -21774.371813 eV Core-core repulsion = 18588.920901 eV Total energy + Delta-G solvation = -3185.450912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43363 -40.35073 -39.02247 -36.19632 -34.97520 -33.60761 -31.95803 -31.60312 -29.46069 -28.31713 -26.96147 -25.64056 -24.45851 -23.07655 -22.60732 -20.59249 -19.48216 -18.73847 -18.40130 -17.49949 -17.31680 -16.55053 -16.24118 -15.86294 -15.65079 -15.31927 -15.15434 -14.71645 -14.52538 -14.18833 -14.09705 -13.74296 -13.48611 -13.14489 -12.87182 -12.85639 -12.73707 -12.58934 -12.26845 -12.07032 -11.87958 -11.82076 -11.68878 -11.40553 -11.05801 -10.77327 -10.42548 -10.29301 -10.25090 -9.38687 -8.10927 -6.24380 0.00559 0.09867 1.40685 1.42015 1.49861 1.54959 2.38104 2.52038 2.75940 3.01718 3.16246 3.66154 3.81538 4.06020 4.11148 4.26462 4.29768 4.35560 4.38921 4.43164 4.51369 4.58732 4.68334 4.78460 4.80970 4.82921 4.86815 4.94544 5.01406 5.08305 5.22195 5.31749 5.41535 5.59211 5.61347 5.82710 5.98529 6.08540 6.15893 6.25316 6.37870 6.84081 7.13640 7.42987 8.93775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.004715 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.216893 B = 5937.625852 C = 7036.250541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.317 6.317 3 C 0.508 3.492 4 N -0.593 5.593 5 C 0.217 3.783 6 C -0.096 4.096 7 C -0.277 4.277 8 C 0.379 3.621 9 N -0.475 5.475 10 C 0.070 3.930 11 C -0.110 4.110 12 C -0.108 4.108 13 C 0.052 3.948 14 H 0.002 0.998 15 C -0.541 4.541 16 H 0.044 0.956 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.273 1.273 23 C 0.100 3.900 24 N -0.606 5.606 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.117 0.883 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.025 0.975 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 9.998 3.291 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.218 6.218 3 C 0.204 3.796 4 N -0.327 5.327 5 C 0.074 3.926 6 C -0.153 4.153 7 C -0.303 4.303 8 C 0.139 3.861 9 N -0.191 5.191 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.033 3.967 14 H 0.020 0.980 15 C -0.579 4.579 16 H 0.062 0.938 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.778 3.222 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.026 4.026 24 N -0.340 5.340 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.197 0.803 32 H 0.135 0.865 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.148 9.107 2.868 20.507 hybrid contribution 0.841 -1.096 0.241 1.402 sum -17.307 8.011 3.108 19.323 Atomic orbital electron populations 1.23219 0.73657 1.05150 1.03042 1.86068 1.25532 1.23137 1.87105 1.20568 0.85276 0.85487 0.88282 1.67992 1.40595 0.98732 1.25386 1.22005 0.91721 0.93226 0.85627 1.20907 0.99043 0.90298 1.05047 1.22287 0.94895 0.99508 1.13593 1.20307 0.90332 0.88230 0.87185 1.59002 1.00940 1.17717 1.41401 1.22382 0.96944 0.97968 0.88158 1.21648 0.92775 0.97682 1.02625 1.21523 1.01902 0.94259 0.96955 1.18665 0.88619 0.94832 0.94588 0.98008 1.21382 0.92634 0.92969 1.50937 0.93772 1.25626 0.97353 1.00387 0.94497 1.69988 1.04396 1.30404 1.50143 0.85700 0.77335 0.80457 0.78687 1.20067 1.20314 1.19782 1.21813 0.96150 0.85483 0.99180 1.67412 1.09537 1.31124 1.25965 0.91661 0.85496 0.91500 0.88072 0.89407 0.87349 0.80345 0.86501 0.94308 0.91817 0.89133 0.91432 0.95658 0.92810 0.95701 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 10.36 113.37 1.17 2.07 16 2 O -0.32 -10.37 10.55 -87.55 -0.92 -11.30 16 3 C 0.51 17.95 8.49 180.59 1.53 19.48 16 4 N -0.59 -17.07 9.16 -301.76 -2.76 -19.83 16 5 C 0.22 5.12 6.81 42.43 0.29 5.41 16 6 C -0.10 -1.17 10.21 71.24 0.73 -0.45 16 7 C -0.28 -7.28 8.94 22.58 0.20 -7.08 16 8 C 0.38 13.62 6.40 133.17 0.85 14.47 16 9 N -0.47 -18.37 4.68 -701.45 -3.28 -21.65 16 10 C 0.07 2.22 5.25 86.33 0.45 2.68 16 11 C -0.11 -3.86 6.09 30.65 0.19 -3.67 16 12 C -0.11 -5.10 5.02 30.68 0.15 -4.94 16 13 C 0.05 2.73 2.27 -11.48 -0.03 2.71 16 14 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 15 C -0.54 -31.34 8.56 25.60 0.22 -31.12 16 16 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 17 C 0.02 1.18 5.30 84.65 0.45 1.63 16 18 N -0.91 -52.76 11.35 21.45 0.24 -52.51 16 19 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.10 4.76 3.89 86.33 0.34 5.09 16 24 N -0.61 -24.54 8.87 -311.08 -2.76 -27.30 16 25 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 26 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 0.80 8.09 -2.39 -0.02 0.78 16 31 H 0.18 3.41 7.23 -2.91 -0.02 3.39 16 32 H 0.12 2.70 6.75 -2.39 -0.02 2.68 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 3.56 6.15 -2.39 -0.01 3.55 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.02 1.23 8.12 -2.39 -0.02 1.21 16 40 H 0.05 2.51 7.73 -2.39 -0.02 2.49 16 Total: -1.00 -71.46 324.52 0.11 -71.35 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.02 Total: 8.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.55 Total: 6.28 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -8.56 Total: -121.30 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.92 Total: -11.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.46 0.11 -71.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.458 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds